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Volumn 4, Issue 6, 2006, Pages 0964-0974

Control of phage Bxb1 excision by a novel recombination directionality factor

Author keywords

[No Author keywords available]

Indexed keywords

INTEGRASE; PROTEIN BXB1; PROTEIN SUBUNIT; RECOMBINANT PROTEIN; SERINE; UNCLASSIFIED DRUG; DNA BINDING PROTEIN; GLYCOPROTEIN; MOUSE MAMMARY TUMOR VIRUS PROTEIN GP47; VIRUS DNA; VIRUS PROTEIN;

EID: 33745192630     PISSN: 15457885     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.0040186     Document Type: Article
Times cited : (104)

References (48)
  • 1
    • 0015172446 scopus 로고
    • Lysogeny: Viral repression and site-specific recombination
    • Echols H (1971) Lysogeny: Viral repression and site-specific recombination. Annu Rev Biochem 40: 827-854.
    • (1971) Annu Rev Biochem , vol.40 , pp. 827-854
    • Echols, H.1
  • 2
    • 0019755836 scopus 로고
    • Integration and excision of bacteriophage lambda: The mechanism of conservation site specific recombination
    • Nash HA (1981) Integration and excision of bacteriophage lambda: The mechanism of conservation site specific recombination. Annu Rev Genet 15: 143-167.
    • (1981) Annu Rev Genet , vol.15 , pp. 143-167
    • Nash, H.A.1
  • 3
    • 0035368920 scopus 로고    scopus 로고
    • Control of directionality in integrase-mediated recombination: Examination of recombination directionality factors (RDFs) including Xis and Cox proteins
    • Lewis JA, Hatfull GF (2001) Control of directionality in integrase-mediated recombination: Examination of recombination directionality factors (RDFs) including Xis and Cox proteins. Nucleic Acids Res 29: 2205-2216.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2205-2216
    • Lewis, J.A.1    Hatfull, G.F.2
  • 4
    • 0002918974 scopus 로고
    • Site specific recombination in phage lambda
    • Hendrix RW, Roberts JW, Stahl FW, Weisberg RA, editors. Cold Spring Harbor (New York): Cold Spring Harbor Laboratory
    • Weisberg RA, Landy A (1983) Site specific recombination in phage lambda. In: Hendrix RW, Roberts JW, Stahl FW, Weisberg RA, editors. Lambda II. Cold Spring Harbor (New York): Cold Spring Harbor Laboratory. pp 211-250.
    • (1983) Lambda II , pp. 211-250
    • Weisberg, R.A.1    Landy, A.2
  • 5
    • 0024386798 scopus 로고
    • Dynamic, structural, and regulatory aspects of lambda site-specific recombination
    • Landy A (1989) Dynamic, structural, and regulatory aspects of lambda site-specific recombination. Annu Rev Biochem 58: 913-949.
    • (1989) Annu Rev Biochem , vol.58 , pp. 913-949
    • Landy, A.1
  • 6
    • 21344466779 scopus 로고    scopus 로고
    • A structural basis for allosteric control of DNA recombination by lambda integrase
    • Biswas T, Aihara H, Radman-Livaja M, Filman D, Landy A, et al. (2005) A structural basis for allosteric control of DNA recombination by lambda integrase. Nature 435: 1059-1066.
    • (2005) Nature , vol.435 , pp. 1059-1066
    • Biswas, T.1    Aihara, H.2    Radman-Livaja, M.3    Filman, D.4    Landy, A.5
  • 7
    • 0020355550 scopus 로고
    • Purification of the bacteriophage lambda xis gene product required for lambda excisive recombination
    • Abremski K, Gottesman S (1982) Purification of the bacteriophage lambda xis gene product required for lambda excisive recombination. J Biol Chem 257: 9658-9662.
    • (1982) J Biol Chem , vol.257 , pp. 9658-9662
    • Abremski, K.1    Gottesman, S.2
  • 8
    • 0021942310 scopus 로고
    • Interaction of the lambda site-specific recombination protein Xis with attachment site DNA
    • U S A
    • Yin S, Bushman W, Landy A (1985) Interaction of the lambda site-specific recombination protein Xis with attachment site DNA. Proc Natl Acad Sci U S A 82: 1040-1044.
    • (1985) Proc Natl Acad Sci , vol.82 , pp. 1040-1044
    • Yin, S.1    Bushman, W.2    Landy, A.3
  • 9
    • 1842505115 scopus 로고    scopus 로고
    • Crystal structure of the excisionase-DNA complex from bacteriophage lambda
    • Sam MD, Cascio D, Johnson RC, Clubb RT (2004) Crystal structure of the excisionase-DNA complex from bacteriophage lambda. J Mol Biol 338: 229-240.
    • (2004) J Mol Biol , vol.338 , pp. 229-240
    • Sam, M.D.1    Cascio, D.2    Johnson, R.C.3    Clubb, R.T.4
  • 10
    • 0024340762 scopus 로고
    • DNA looping generated by DNA bending protein IHF and the two domains of lambda integrase
    • Moitoso de Vargas L, Kim S, Landy A (1989) DNA looping generated by DNA bending protein IHF and the two domains of lambda integrase. Science 244: 1457-1461.
    • (1989) Science , vol.244 , pp. 1457-1461
    • Moitoso De Vargas, L.1    Kim, S.2    Landy, A.3
  • 11
    • 0018931537 scopus 로고
    • Integrative recombination of bacteriophage lambda: Extent of the DNA sequence involved in attachment site function
    • U S A
    • Mizuuchi M, Mizuuchi K (1980) Integrative recombination of bacteriophage lambda: Extent of the DNA sequence involved in attachment site function. Proc Natl Acad Sci U S A 77: 3220-3224.
    • (1980) Proc Natl Acad Sci , vol.77 , pp. 3220-3224
    • Mizuuchi, M.1    Mizuuchi, K.2
  • 12
    • 0018939726 scopus 로고
    • The lambda phage att site: Functional limits and interaction with Int protein
    • Hsu PL, Ross W, Landy A (1980) The lambda phage att site: Functional limits and interaction with Int protein. Nature 285: 85-91.
    • (1980) Nature , vol.285 , pp. 85-91
    • Hsu, P.L.1    Ross, W.2    Landy, A.3
  • 13
    • 0020361203 scopus 로고
    • Bacteriophage lambda int protein recognizes two classes of sequence in the phage att site: Characterization of arm-type sites
    • U S A
    • Ross W, Landy A (1982) Bacteriophage lambda int protein recognizes two classes of sequence in the phage att site: Characterization of arm-type sites. Proc Natl Acad Sci U S A 79: 7724-7728.
    • (1982) Proc Natl Acad Sci , vol.79 , pp. 7724-7728
    • Ross, W.1    Landy, A.2
  • 14
    • 0021710080 scopus 로고
    • E. coli integration host factor binds to specific sites in DNA
    • Craig NL, Nash HA (1984) E. coli integration host factor binds to specific sites in DNA. Cell 39: 707-716.
    • (1984) Cell , vol.39 , pp. 707-716
    • Craig, N.L.1    Nash, H.A.2
  • 15
    • 0026537332 scopus 로고
    • Lambda Int protein bridges between higher order complexes at two distant chromosomal loci attL and attR
    • Kim S, Landy A (1992) Lambda Int protein bridges between higher order complexes at two distant chromosomal loci attL and attR. Science 256: 198-203.
    • (1992) Science , vol.256 , pp. 198-203
    • Kim, S.1    Landy, A.2
  • 16
    • 0023854278 scopus 로고
    • Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex
    • Richet E, Abcarian P, Nash HA (1988) Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex. Cell 52: 9-17.
    • (1988) Cell , vol.52 , pp. 9-17
    • Richet, E.1    Abcarian, P.2    Nash, H.A.3
  • 17
    • 0020537076 scopus 로고
    • Patterns of lambda Int recognition in the regions of strand exchange
    • Ross W, Landy A (1983) Patterns of lambda Int recognition in the regions of strand exchange. Cell 33: 261-272.
    • (1983) Cell , vol.33 , pp. 261-272
    • Ross, W.1    Landy, A.2
  • 18
    • 0020651375 scopus 로고
    • Role of the Xis protein of bacteriophage lambda in a specific reactive complex at the attR prophage attachment site
    • Better M, Wickner S, Auerbach J, Echols H (1983) Role of the Xis protein of bacteriophage lambda in a specific reactive complex at the attR prophage attachment site. Cell 32: 161-168.
    • (1983) Cell , vol.32 , pp. 161-168
    • Better, M.1    Wickner, S.2    Auerbach, J.3    Echols, H.4
  • 19
    • 0141818942 scopus 로고    scopus 로고
    • The molecular basis of co-operative DNA binding between lambda integrase and excisionase
    • Swalla BM, Cho EH, Gumport RI, Gardner JF (2003) The molecular basis of co-operative DNA binding between lambda integrase and excisionase. Mol Microbiol 50: 89-99.
    • (2003) Mol Microbiol , vol.50 , pp. 89-99
    • Swalla, B.M.1    Cho, E.H.2    Gumport, R.I.3    Gardner, J.F.4
  • 20
    • 0036724215 scopus 로고    scopus 로고
    • Interactions between integrase and excisionase in the phage lambda excisive nucleoprotein complex
    • Cho EH, Gumport RI, Gardner JF (2002) Interactions between integrase and excisionase in the phage lambda excisive nucleoprotein complex. J Bacteriol 184: 5200-5203.
    • (2002) J Bacteriol , vol.184 , pp. 5200-5203
    • Cho, E.H.1    Gumport, R.I.2    Gardner, J.F.3
  • 21
    • 0026700238 scopus 로고
    • Characterization of the bacteriophage lambda excisionase (Xis) protein: The C-terminus is required for Xis-integrase cooperativity but not for DNA binding
    • Numrych TE, Gumport RI, Gardner JF (1992) Characterization of the bacteriophage lambda excisionase (Xis) protein: The C-terminus is required for Xis-integrase cooperativity but not for DNA binding. EMBO J 11: 3797-3806.
    • (1992) EMBO J , vol.11 , pp. 3797-3806
    • Numrych, T.E.1    Gumport, R.I.2    Gardner, J.F.3
  • 22
    • 0028344267 scopus 로고
    • Alp suppression of Lon: Dependence on the slpA gene
    • Trempy JE, Kirby JE, Gottesman S (1994) Alp suppression of Lon: Dependence on the slpA gene. J Bacteriol 176: 2061-2067.
    • (1994) J Bacteriol , vol.176 , pp. 2061-2067
    • Trempy, J.E.1    Kirby, J.E.2    Gottesman, S.3
  • 23
    • 0030851496 scopus 로고    scopus 로고
    • Reciprocal regulation of the early promoter region of bacteriophage HP1 by the Cox and Cl proteins
    • Esposito D, Wilson JC, Scocca JJ (1997) Reciprocal regulation of the early promoter region of bacteriophage HP1 by the Cox and Cl proteins. Virology 234: 267-276.
    • (1997) Virology , vol.234 , pp. 267-276
    • Esposito, D.1    Wilson, J.C.2    Scocca, J.J.3
  • 24
    • 0023425701 scopus 로고
    • The cox protein of bacteriophage P2 inhibits the formation of the repressor protein and autoregulates the early operon
    • Saha S, Haggard-Ljungquist E, Nordstrom K (1987) The cox protein of bacteriophage P2 inhibits the formation of the repressor protein and autoregulates the early operon. EMBO J 6: 3191-3199.
    • (1987) EMBO J , vol.6 , pp. 3191-3199
    • Saha, S.1    Haggard-Ljungquist, E.2    Nordstrom, K.3
  • 25
    • 0029789076 scopus 로고    scopus 로고
    • A resolvase-like protein is required for the site-specific integration of the temperate lactococcal bacteriophage TP901-1
    • Christiansen B, Brondsted L, Vogensen FK, Hammer K (1996) A resolvase-like protein is required for the site-specific integration of the temperate lactococcal bacteriophage TP901-1. J Bacteriol 178: 5164-5173.
    • (1996) J Bacteriol , vol.178 , pp. 5164-5173
    • Christiansen, B.1    Brondsted, L.2    Vogensen, F.K.3    Hammer, K.4
  • 26
    • 77957094820 scopus 로고
    • Episomes
    • Campbell A (1962) Episomes. Adv Genet 11: 101-145.
    • (1962) Adv Genet , vol.11 , pp. 101-145
    • Campbell, A.1
  • 27
    • 85158006363 scopus 로고    scopus 로고
    • The movement of Tn3-like elements: Transposition and cointegrate resolution
    • Craig NL, Craigie R, Geller M, Lambowitz AM, editors. Washington (D. C.): ASM Press
    • Grindley NDF (2002) The movement of Tn3-like elements: Transposition and cointegrate resolution. In: Craig NL, Craigie R, Geller M, Lambowitz AM, editors. Mobile DNA II. Washington (D. C.): ASM Press. pp 272-302.
    • (2002) Mobile DNA II , pp. 272-302
    • Grindley, N.D.F.1
  • 28
    • 85157968632 scopus 로고    scopus 로고
    • Bacterial site-specific DNA inversion systems
    • Craig NL, Craigie R, Geller M, Lambowitz AM, editors. Washington (D. C.): American Society of Microbiology
    • Johnson RC (2002) Bacterial site-specific DNA inversion systems. In: Craig NL, Craigie R, Geller M, Lambowitz AM, editors. Mobile DNA II. Washington (D. C.): American Society of Microbiology. pp 230-271.
    • (2002) Mobile DNA II , pp. 230-271
    • Johnson, R.C.1
  • 29
    • 0036229438 scopus 로고    scopus 로고
    • Diversity in the serine recombinases
    • Smith MC, Thorpe HM (2002) Diversity in the serine recombinases. Mol Microbiol 44: 299-307.
    • (2002) Mol Microbiol , vol.44 , pp. 299-307
    • Smith, M.C.1    Thorpe, H.M.2
  • 30
    • 0032510752 scopus 로고    scopus 로고
    • In vitro site-specific integration of bacteriophage DNA catalyzed by a recombinase of the resolvase/invertase family
    • U S A
    • Thorpe HM, Smith MC (1998) In vitro site-specific integration of bacteriophage DNA catalyzed by a recombinase of the resolvase/invertase family. Proc Natl Acad Sci U S A 95: 5505-5510.
    • (1998) Proc Natl Acad Sci , vol.95 , pp. 5505-5510
    • Thorpe, H.M.1    Smith, M.C.2
  • 31
    • 0033745097 scopus 로고    scopus 로고
    • Control of directionality in the site-specific recombination system of the Streptomyces phage phiC31
    • Thorpe HM, Wilson SE, Smith MC (2000) Control of directionality in the site-specific recombination system of the Streptomyces phage phiC31. Mol Microbiol 38: 232-241.
    • (2000) Mol Microbiol , vol.38 , pp. 232-241
    • Thorpe, H.M.1    Wilson, S.E.2    Smith, M.C.3
  • 32
    • 0344614697 scopus 로고    scopus 로고
    • Novel organization of genes involved in prophage excision identified in the temperate lactococcal bacteriophage TP901-1
    • Breuner A, Brondsted L, Hammer K (1999) Novel organization of genes involved in prophage excision identified in the temperate lactococcal bacteriophage TP901-1. J Bacteriol 181: 7291-7297.
    • (1999) J Bacteriol , vol.181 , pp. 7291-7297
    • Breuner, A.1    Brondsted, L.2    Hammer, K.3
  • 33
    • 0036283336 scopus 로고    scopus 로고
    • Phage TP901-1 site-specific integrase functions in human cells
    • Stoll SM, Ginsburg DS, Calos MP (2002) Phage TP901-1 site-specific integrase functions in human cells. J Bacteriol 184: 3657-3663.
    • (2002) J Bacteriol , vol.184 , pp. 3657-3663
    • Stoll, S.M.1    Ginsburg, D.S.2    Calos, M.P.3
  • 34
    • 0142062042 scopus 로고    scopus 로고
    • Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene
    • Kim AI, Ghosh P, Aaron MA, Bibb LA, Jain S, et al. (2003) Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene. Mol Microbiol 50: 463-473.
    • (2003) Mol Microbiol , vol.50 , pp. 463-473
    • Kim, A.I.1    Ghosh, P.2    Aaron, M.A.3    Bibb, L.A.4    Jain, S.5
  • 35
    • 0036033757 scopus 로고    scopus 로고
    • Integration and excision of the Mycobacterium tuberculosis prophage-like element, phiRv1
    • Bibb LA, Hatfull GF (2002) Integration and excision of the Mycobacterium tuberculosis prophage-like element, phiRv1. Mol Microbiol 45: 1515-1526.
    • (2002) Mol Microbiol , vol.45 , pp. 1515-1526
    • Bibb, L.A.1    Hatfull, G.F.2
  • 36
    • 15944409968 scopus 로고    scopus 로고
    • Integration and excision by the large serine recombinase phiRv1 integrase
    • Bibb LA, Hancox MI, Hatfull GF (2005) Integration and excision by the large serine recombinase phiRv1 integrase. Mol Microbiol 55: 1896-1910.
    • (2005) Mol Microbiol , vol.55 , pp. 1896-1910
    • Bibb, L.A.1    Hancox, M.I.2    Hatfull, G.F.3
  • 37
    • 0344413517 scopus 로고    scopus 로고
    • The orientation of mycobacteriophage Bxb1 integration is solely dependent on the central dinucleotide of attP and attB
    • Ghosh P, Kim AI, Hatfull GF (2003) The orientation of mycobacteriophage Bxb1 integration is solely dependent on the central dinucleotide of attP and attB. Mol Cell 12: 1101-1111.
    • (2003) Mol Cell , vol.12 , pp. 1101-1111
    • Ghosh, P.1    Kim, A.I.2    Hatfull, G.F.3
  • 38
    • 28344453690 scopus 로고    scopus 로고
    • GroEL1: A dedicated chaperone involved in mycolic acid biosynthesis during biofilm formation in mycobacteria
    • Ojha A, Anand M, Bhatt A, Kremer L, Jacobs WR Jr, et al. (2005) GroEL1: A dedicated chaperone involved in mycolic acid biosynthesis during biofilm formation in mycobacteria. Cell 123: 861-873.
    • (2005) Cell , vol.123 , pp. 861-873
    • Ojha, A.1    Anand, M.2    Bhatt, A.3    Kremer, L.4    Jacobs Jr., W.R.5
  • 39
    • 18844367126 scopus 로고    scopus 로고
    • Synapsis in phage Bxb1 integration: Selection mechanism for the correct pair of recombination sites
    • Ghosh P, Pannunzio NR, Hatfull GF (2005) Synapsis in phage Bxb1 integration: Selection mechanism for the correct pair of recombination sites. J Mol Biol 349: 331-348.
    • (2005) J Mol Biol , vol.349 , pp. 331-348
    • Ghosh, P.1    Pannunzio, N.R.2    Hatfull, G.F.3
  • 40
  • 41
    • 0027456546 scopus 로고
    • DNA sequence, structure and gene expression of mycobacteriophage L5: A phage system for mycobacterial genetics
    • Hatfull GF, Sarkis GJ (1993) DNA sequence, structure and gene expression of mycobacteriophage L5: A phage system for mycobacterial genetics. Mol Microbiol 7: 395-405.
    • (1993) Mol Microbiol , vol.7 , pp. 395-405
    • Hatfull, G.F.1    Sarkis, G.J.2
  • 43
    • 0033972688 scopus 로고    scopus 로고
    • Identification and characterization of mycobacteriophage L5 excisionase
    • Lewis JA, Hatfull GF (2000) Identification and characterization of mycobacteriophage L5 excisionase. Mol Microbiol 35: 350-360.
    • (2000) Mol Microbiol , vol.35 , pp. 350-360
    • Lewis, J.A.1    Hatfull, G.F.2
  • 44
    • 0031979599 scopus 로고    scopus 로고
    • The ArcA/ArcB two-component regulatory system of Escherichia coli is essential for Xer site-specific recombination at psi
    • Colloms SD, Alen C, Sherratt DJ (1998) The ArcA/ArcB two-component regulatory system of Escherichia coli is essential for Xer site-specific recombination at psi. Mol Microbiol 28: 521-530.
    • (1998) Mol Microbiol , vol.28 , pp. 521-530
    • Colloms, S.D.1    Alen, C.2    Sherratt, D.J.3
  • 45
    • 0034892598 scopus 로고    scopus 로고
    • Identification of genes required for excision of CTnDOT, a Bacteroides conjugative transposon
    • Cheng Q, Sutanto Y, Shoemaker NB, Gardner JF, Salyers AA (2001) Identification of genes required for excision of CTnDOT, a Bacteroides conjugative transposon. Mol Microbiol 41: 625-632.
    • (2001) Mol Microbiol , vol.41 , pp. 625-632
    • Cheng, Q.1    Sutanto, Y.2    Shoemaker, N.B.3    Gardner, J.F.4    Salyers, A.A.5
  • 46
    • 0027134887 scopus 로고
    • The Cox protein is a modulator of directionality in bacteriophage P2 site-specific recombination
    • Yu A, Haggard-Ljungquist E (1993) The Cox protein is a modulator of directionality in bacteriophage P2 site-specific recombination. J Bacteriol 175: 7848-7855.
    • (1993) J Bacteriol , vol.175 , pp. 7848-7855
    • Yu, A.1    Haggard-Ljungquist, E.2
  • 47
    • 0028244101 scopus 로고
    • Dissecting the resolution reaction of lambda integrase using suicide Holliday junction substrates
    • Kho SH, Landy A (1994) Dissecting the resolution reaction of lambda integrase using suicide Holliday junction substrates. EMBO J 13: 2714-2724.
    • (1994) EMBO J , vol.13 , pp. 2714-2724
    • Kho, S.H.1    Landy, A.2
  • 48
    • 0024278670 scopus 로고
    • Suicide recombination substrates yield covalent lambda integrase-DNA complexes and lead to identification of the active site tyrosine
    • Pargellis CA, Nunes-Duby SE, de Vargas LM, Landy A (1988) Suicide recombination substrates yield covalent lambda integrase-DNA complexes and lead to identification of the active site tyrosine. J Biol Chem 263: 7678-7685.
    • (1988) J Biol Chem , vol.263 , pp. 7678-7685
    • Pargellis, C.A.1    Nunes-Duby, S.E.2    De Vargas, L.M.3    Landy, A.4


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