-
1
-
-
0034069612
-
Single-molecule studies of DNA mechanics
-
C. Bustamante, S. B. Smith, J. Liphardt and D. Smith, Single-molecule studies of DNA mechanics, Curr. Op. Structural Biology 10(2000), 279-285.
-
(2000)
Curr. Op. Structural Biology
, vol.10
, pp. 279-285
-
-
Bustamante, C.1
Smith, S.B.2
Liphardt, J.3
Smith, D.4
-
2
-
-
0037277427
-
Stretching of macromolecules and proteins
-
T. R. Strick, M.-N. Dessinges, G. Charvin, N. H. Dekker, J.-F. Allemand, D. Bensimon, and V. Croquette, Stretching of macromolecules and proteins, Rep. Prog. Phys. 66(2003), 1-45.
-
(2003)
Rep. Prog. Phys.
, vol.66
, pp. 1-45
-
-
Strick, T.R.1
Dessinges, M.-N.2
Charvin, G.3
Dekker, N.H.4
Allemand, J.-F.5
Bensimon, D.6
Croquette, V.7
-
3
-
-
0141482089
-
Supercoiling and denaturation in gal repressor-heat unstable nucleoid protein (hu)-mediated dna looping
-
G. Lia, D. Bensimon, V. Croquette, J. F. Allemand, D. Dunlap, D. E. A. Lewis, S. Adhya, and L. Finzi, Supercoiling and denaturation in gal repressor-heat unstable nucleoid protein (hu)-mediated dna looping, Proc. Natl. Acad. Sci. (USA) 100(2003), 11373-11377.
-
(2003)
Proc. Natl. Acad. Sci. (USA)
, vol.100
, pp. 11373-11377
-
-
Lia, G.1
Bensimon, D.2
Croquette, V.3
Allemand, J.F.4
Dunlap, D.5
Lewis, D.E.A.6
Adhya, S.7
Finzi, L.8
-
4
-
-
0035957720
-
Reversible unfolding of single RNA molecules by mechanical force
-
J. Liphardt, B. Onoa, S. B. Smith, I. Tinoco Jr., and C. Bustamante, Reversible unfolding of single RNA molecules by mechanical force, Science 292(2001), 733-737.
-
(2001)
Science
, vol.292
, pp. 733-737
-
-
Liphardt, J.1
Onoa, B.2
Smith, S.B.3
Tinoco Jr., I.4
Bustamante, C.5
-
5
-
-
0030867320
-
Driving proteins off DNA using applied tension
-
J. F. Marko and E. D. Siggia, Driving proteins off DNA using applied tension, Biophys. J. 73(1997), 2173-2178.
-
(1997)
Biophys. J.
, vol.73
, pp. 2173-2178
-
-
Marko, J.F.1
Siggia, E.D.2
-
6
-
-
0033602221
-
Atomic force microscopy: A forceful way with single molecules
-
A. Engel and H. E. Gaub and D. J. Müller, Atomic force microscopy: A forceful way with single molecules, Curr. Biol. 9(1999), pp. R133-R136.
-
(1999)
Curr. Biol.
, vol.9
-
-
Engel, A.1
Gaub, H.E.2
Müller, D.J.3
-
7
-
-
0031001349
-
Dynamic strength of molecular adhesion bonds
-
E. Evans and K. Ritchie, Dynamic Strength of Molecular Adhesion Bonds, Biophysical Journal 72(1997), pp. 1541-1555.
-
(1997)
Biophysical Journal
, vol.72
, pp. 1541-1555
-
-
Evans, E.1
Ritchie, K.2
-
8
-
-
0030064676
-
DNA: An extensible molecule
-
P. Cluzel, A. Lebrun, C. Heller, R. Lavery, J.-L. Viovy, D. Chatenay and F. Caron, DNA: an extensible molecule, Science 271(1996), pp. 792-794.
-
(1996)
Science
, vol.271
, pp. 792-794
-
-
Cluzel, P.1
Lebrun, A.2
Heller, C.3
Lavery, R.4
Viovy, J.-L.5
Chatenay, D.6
Caron, F.7
-
9
-
-
0026495432
-
Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads
-
S. B. Smith, L. Finzi and C. Bustamante, Direct Mechanical Measurements of the Elasticity of Single DNA Molecules by using Magnetic Beads, Science 258(1992), pp. 1122-1126.
-
(1992)
Science
, vol.258
, pp. 1122-1126
-
-
Smith, S.B.1
Finzi, L.2
Bustamante, C.3
-
10
-
-
0026207533
-
Laser manipulation of atoms and particles
-
S. Chu, Laser manipulation of atoms and particles, Science 253(1991), pp. 861-866.
-
(1991)
Science
, vol.253
, pp. 861-866
-
-
Chu, S.1
-
11
-
-
0034528817
-
Twisting and stretching single dna molecules
-
J.-F. Allemand, T. Strick, V. Croquette, and D. Bensimon, Twisting and stretching single dna molecules, Prog. Biophys. Molec. Biol. 74(2000), 115-140.
-
(2000)
Prog. Biophys. Molec. Biol.
, vol.74
, pp. 115-140
-
-
Allemand, J.-F.1
Strick, T.2
Croquette, V.3
Bensimon, D.4
-
12
-
-
0031961707
-
Signals and noise in micromechanical measurements
-
F. Gittes and C. F. Schmidt, Signals and noise in micromechanical measurements, Methods in Cell Biology 55(1998), 129-156.
-
(1998)
Methods in Cell Biology
, vol.55
, pp. 129-156
-
-
Gittes, F.1
Schmidt, C.F.2
-
13
-
-
0032564447
-
Stretched and overwound DNA form a Pauling-like structure with exposed bases
-
J.-F. Allemand, D. Bensimon, R. Lavery, and V. Croquette, Stretched and overwound DNA form a Pauling-like structure with exposed bases, Proc. Natl. Acad. Sci. USA 95(1998), 14152-14157.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14152-14157
-
-
Allemand, J.-F.1
Bensimon, D.2
Lavery, R.3
Croquette, V.4
-
14
-
-
18744407040
-
Stretching ssdna, a model polyelectrolyte
-
M.-N. Dessinges, B. Maier, Y. Zhang, M. Peliti, D. Bensimon, and V. Croquette, Stretching ssdna, a model polyelectrolyte, Phys. Rev. Lett. 89(2002), 248102.
-
(2002)
Phys. Rev. Lett.
, vol.89
, pp. 248102
-
-
Dessinges, M.-N.1
Maier, B.2
Zhang, Y.3
Peliti, M.4
Bensimon, D.5
Croquette, V.6
-
15
-
-
11744311356
-
Statistical mechanics of supercoiled DNA
-
J. F. Marko and E. Siggia, Statistical mechanics of supercoiled DNA, Phys. Rev. E 52(3) (1995), 2912-2938.
-
(1995)
Phys. Rev. E
, vol.52
, Issue.3
, pp. 2912-2938
-
-
Marko, J.F.1
Siggia, E.2
-
16
-
-
0032937079
-
Estimating the persistence length of a worm-like chain molecule from force-extension measurements
-
C. Bouchiat, M. D. Wang, S. M. Block, J.-F. Allemand, T. R. Strick, and V. Croquette, Estimating the persistence length of a worm-like chain molecule from force-extension measurements, Biophys. J. 76(1999), 409-413.
-
(1999)
Biophys. J.
, vol.76
, pp. 409-413
-
-
Bouchiat, C.1
Wang, M.D.2
Block, S.M.3
Allemand, J.-F.4
Strick, T.R.5
Croquette, V.6
-
17
-
-
0031895463
-
The behavior of supercoi l ed DN A
-
T. Strick, J.-F. Allemand, D. Bensimon, and V. Croquette, The behavior of supercoi l ed DN A, Biophys. J. 74(1998), 2016-2028.
-
(1998)
Biophys. J.
, vol.74
, pp. 2016-2028
-
-
Strick, T.1
Allemand, J.-F.2
Bensimon, D.3
Croquette, V.4
-
18
-
-
0020775545
-
-
C. C. Richardson, Cell 33(1983), 315-317.
-
(1983)
Cell
, vol.33
, pp. 315-317
-
-
Richardson, C.C.1
-
19
-
-
0035997368
-
DNA replication in eukaryotic cells
-
S. P. Bell, and A. Dutta, DNA replication in eukaryotic cells, Annu. Rev. Biochem. 71(2002), 333-374.
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 333-374
-
-
Bell, S.P.1
Dutta, A.2
-
20
-
-
0034921855
-
Replisome-mediated DNA replication
-
S. J. Benkovic, A. M. Valentine, and F. Salinas, Replisome-mediated DNA replication, Annu. Rev. Biochem. 70(2001), 181-208.
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 181-208
-
-
Benkovic, S.J.1
Valentine, A.M.2
Salinas, F.3
-
21
-
-
0016622213
-
Reconstruction of bacteriophage T4 DNA replication apparatus from purified components: Rolling circle replication following de novo chain initiation on a single-stranded circular DNA template
-
C. F. Morris, N. K. Sinha, and B. M. Alberts, Reconstruction of bacteriophage T4 DNA replication apparatus from purified components: rolling circle replication following de novo chain initiation on a single-stranded circular DNA template, Proc. Natl. Acad. Sci. USA 72(1975), 4800-4804.
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 4800-4804
-
-
Morris, C.F.1
Sinha, N.K.2
Alberts, B.M.3
-
22
-
-
0019458103
-
Two types of replication proteins increase the rate at which T4 DNA polymerase traverses the helical regions in a singlestranded DNA template
-
C. C. Huang, J. E. Hearst, and B. M. Alberts, Two types of replication proteins increase the rate at which T4 DNA polymerase traverses the helical regions in a singlestranded DNA template, J. Biol. Chem. 256(1981), 4087-4094.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 4087-4094
-
-
Huang, C.C.1
Hearst, J.E.2
Alberts, B.M.3
-
23
-
-
0029240169
-
Accessory proteins function as matchmakers in the assembly of the T4 DNA polymerase holoenzyme
-
B. F. Kaboord, and S. J. Benkovic, Accessory proteins function as matchmakers in the assembly of the T4 DNA polymerase holoenzyme, Curr. Biol. 5(1995), 149-157.
-
(1995)
Curr. Biol.
, vol.5
, pp. 149-157
-
-
Kaboord, B.F.1
Benkovic, S.J.2
-
24
-
-
0019430447
-
Characterization of the DNA-dependent GTPase activity of T4 gene 41 protein, an essential component of the T4 bacteriophage DNA replication apparatus
-
C. C. Liu, and B. M. Alberts, Characterization of the DNA-dependent GTPase activity of T4 gene 41 protein, an essential component of the T4 bacteriophage DNA replication apparatus, J. Biol. Chem. 256(1981), 2813-2820.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 2813-2820
-
-
Liu, C.C.1
Alberts, B.M.2
-
25
-
-
0023645225
-
Bacteriophage T4 DNA primase-helicase. Characterization of oligomer synthesis by T4 61 protein alone and in conjunction with T4 41 protein
-
D. M. Hinton, and N. G. Nossal, Bacteriophage T4 DNA primase-helicase. Characterization of oligomer synthesis by T4 61 protein alone and in conjunction with T4 41 protein, J. Biol. Chem. 262(1987), 10873-10878.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 10873-10878
-
-
Hinton, D.M.1
Nossal, N.G.2
-
26
-
-
21844446871
-
The oligomeric T4 primase is the functional form during replication
-
J. Yang, J. Xi, Z. Zhuang, and S. J. Benkovic, The oligomeric T4 primase is the functional form during replication, J. Biol. Chem. 280(2005), 25416-25423.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 25416-25423
-
-
Yang, J.1
Xi, J.2
Zhuang, Z.3
Benkovic, S.J.4
-
27
-
-
0038756406
-
Architecture of the replication complex and DNA loops at the fork generated by the bacteriophage t4 proteins
-
P. D. Chastain, 2nd, A. M. Makhov, N. G. Nossal, and J. Griffith, Architecture of the replication complex and DNA loops at the fork generated by the bacteriophage t4 proteins, J. Biol. Chem. 278(2003), 21276-21285.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 21276-21285
-
-
Chastain II, P.D.1
Makhov, A.M.2
Nossal, N.G.3
Griffith, J.4
-
28
-
-
0028586099
-
Purification and characterization of bacteriophage T4 gene 59 protein. A DNA helicase assembly protein involved in DNA replication
-
J. Barry, and B. Alberts, Purification and characterization of bacteriophage T4 gene 59 protein. A DNA helicase assembly protein involved in DNA replication, J. Biol. Chem. 269(1994), 33049-33062.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 33049-33062
-
-
Barry, J.1
Alberts, B.2
-
29
-
-
17544363810
-
Stoichiometry and DNA unwinding by the bacteriophage T4 41:59 helicase
-
K. D. Raney, T. E. Carver, and S. J. Benkovic, Stoichiometry and DNA unwinding by the bacteriophage T4 41:59 helicase, J. Biol. Chem. 271(1996), 14074-14081.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 14074-14081
-
-
Raney, K.D.1
Carver, T.E.2
Benkovic, S.J.3
-
34
-
-
2342598305
-
Single molecule assay reveals strand switching and enhanced processivity of uvrd
-
M. N. Dessinges, T. Lionnet, X. G. Xi, D. Bensimon, and V. Croquette, Single molecule assay reveals strand switching and enhanced processivity of uvrd, Proc. Natl. Acad. Sci. U S A 101(2004), 6439-44.
-
(2004)
Proc. Natl. Acad. Sci. U S A
, vol.101
, pp. 6439-6444
-
-
Dessinges, M.N.1
Lionnet, T.2
Xi, X.G.3
Bensimon, D.4
Croquette, V.5
-
35
-
-
34250766751
-
-
D. Su, L., B. Johnson, B. Y. Smith, S. S. Patel, and M. D. Wang, Cell 129(2007), 1299-1309.
-
(2007)
Cell
, vol.129
, pp. 1299-1309
-
-
Su, D.1
Johnson, L.B.2
Smith, B.Y.3
Patel, S.S.4
Wang, M.D.5
-
36
-
-
38049186506
-
Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism
-
T. Lionnet, M. M. Spiering, S. J. Benkovic, D. Bensimon, and V. Croquette, Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism, Proc. Natl. Acad. Sci. USA 104(2007), 19790-19795.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 19790-19795
-
-
Lionnet, T.1
Spiering, M.M.2
Benkovic, S.J.3
Bensimon, D.4
Croquette, V.5
-
39
-
-
0024604814
-
Characterization of the bacteriophage T4 gene 41 DNA helicase
-
R. W. Richardson, and N. G. Nossal, Characterization of the bacteriophage T4 gene 41 DNA helicase, J. Biol. Chem. 264(1989), 4725-4731.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 4725-4731
-
-
Richardson, R.W.1
Nossal, N.G.2
-
40
-
-
0025051903
-
Effects of the bacteriophage T4 gene 41 and gene 32 proteins on RNA primer synthesis: Coupling of leading- and lagging-strand DNA synthesis at a replication fork
-
T. A. Cha, and B. M. Alberts, Effects of the bacteriophage T4 gene 41 and gene 32 proteins on RNA primer synthesis: coupling of leading- and lagging-strand DNA synthesis at a replication fork, Biochemistry 29(1990), 1791-1798.
-
(1990)
Biochemistry
, vol.29
, pp. 1791-1798
-
-
Cha, T.A.1
Alberts, B.M.2
-
41
-
-
31844453991
-
-
J. B. Lee, R. K. Hite, S. M. Hamdan, X. S. Xie, C. C. Richardson, and A. M. Van Oijen, Nature 439(2006), 621-624.
-
(2006)
Nature
, vol.439
, pp. 621-624
-
-
Lee, J.B.1
Hite, R.K.2
Hamdan, S.M.3
Xie, X.S.4
Richardson, C.C.5
Van Oijen, A.M.6
-
42
-
-
0347075718
-
-
M. A. Trakselis, R. M. Roccasecca, J. Yang, A. M. Valentine, and S. J. Benkovic, J. Biol. Chem. 278(2004), 49839-49849.
-
(2004)
J. Biol. Chem.
, vol.278
, pp. 49839-49849
-
-
Trakselis, M.A.1
Roccasecca, R.M.2
Yang, J.3
Valentine, A.M.4
Benkovic, S.J.5
-
43
-
-
84879107414
-
-
M. Manosas, M. M. Spiering, Z. Zhuang, S. J. Benkovic, and V. Croquette, unpublished.
-
Unpublished.
-
-
Manosas, M.1
Spiering, M.M.2
Zhuang, Z.3
Benkovic, S.J.4
Croquette, V.5
-
44
-
-
0035909835
-
-
A. M. Valentine, F. T. Ishmael, V. K. Shier, and S. J. Benkovic, Biochemistry 40(2001), 15074-15085.
-
(2001)
Biochemistry
, vol.40
, pp. 15074-15085
-
-
Valentine, A.M.1
Ishmael, F.T.2
Shier, V.K.3
Benkovic, S.J.4
-
45
-
-
53049100031
-
RNA primer handoff in bacteriophage T4 DNA replication: The role of single-stranded DNA binding protein and polymerase accessory proteins
-
S. W. Nelson, R. Kumar, and S. J. Benkovic, RNA primer handoff in bacteriophage T4 DNA replication: The role of single-stranded DNA binding protein and polymerase accessory proteins, J. Biol. Chem. 283(2008), 22838-22846.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 22838-22846
-
-
Nelson, S.W.1
Kumar, R.2
Benkovic, S.J.3
-
47
-
-
0037832404
-
Myosin v walks hand-over-hand: Single fluorophore imaging with 1.5 nm localization
-
A. Yildiz, J. N. Forkey, S. A. McKinney, T. Ha, Y. E. Goldman, and P. R. Selvin, Myosin v walks hand-over-hand: single fluorophore imaging with 1.5 nm localization, Science 300(2003), 2061-2065.
-
(2003)
Science
, vol.300
, pp. 2061-2065
-
-
Yildiz, A.1
Forkey, J.N.2
McKinney, S.A.3
Ha, T.4
Goldman, Y.E.5
Selvin, P.R.6
-
48
-
-
0034674420
-
-
X. Zhuang, L. E. Bartley, H. P. Babcock, R. Russel, T. Ha, D. Herschlag, and S. Chu, Science 288(2000), 2048-2051.
-
(2000)
Science
, vol.288
, pp. 2048-2051
-
-
Zhuang, X.1
Bartley, L.E.2
Babcock, H.P.3
Russel, R.4
Ha, T.5
Herschlag, D.6
Chu, S.7
-
49
-
-
0033548686
-
Fluorescence spectroscopy of single biomolecules
-
S. Weiss, Fluorescence spectroscopy of single biomolecules, Science 283(1999), 1676-1683.
-
(1999)
Science
, vol.283
, pp. 1676-1683
-
-
Weiss, S.1
-
50
-
-
0028945654
-
Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution
-
T. Funatsu, Y. Harada, M. Tokunaga, K. Saito, and T. Yanagida, Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution, Nature 374(1995), 555-559.
-
(1995)
Nature
, vol.374
, pp. 555-559
-
-
Funatsu, T.1
Harada, Y.2
Tokunaga, M.3
Saito, K.4
Yanagida, T.5
-
51
-
-
0032559298
-
-
A. Ishijima, H. Kojima, T. Funatsu, M. Tokunaga, H. Higuchi, H. Tanaka, T. Yanagida, Cell 92(1998), 161-171.
-
(1998)
Cell
, vol.92
, pp. 161-171
-
-
Ishijima, A.1
Kojima, H.2
Funatsu, T.3
Tokunaga, M.4
Higuchi, H.5
Tanaka, H.6
Yanagida, T.7
|