-
1
-
-
84857510185
-
Single-molecule fluorescence experiments determine protein folding transition path times
-
H.S. Chung, and K. McHale W.A. Eaton Single-molecule fluorescence experiments determine protein folding transition path times Science 335 2012 981 984
-
(2012)
Science
, vol.335
, pp. 981-984
-
-
Chung, H.S.1
McHale, K.2
Eaton, W.A.3
-
2
-
-
84874227957
-
Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy
-
K.C. Jones, C.S. Peng, and A. Tokmakoff Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy Proc. Natl. Acad. Sci. USA 110 2013 2828 2833
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 2828-2833
-
-
Jones, K.C.1
Peng, C.S.2
Tokmakoff, A.3
-
3
-
-
42449110311
-
Amide i two-dimensional infrared spectroscopy of proteins
-
Z. Ganim, and H.S. Chung A. Tokmakoff Amide I two-dimensional infrared spectroscopy of proteins Acc. Chem. Res. 41 2008 432 441
-
(2008)
Acc. Chem. Res.
, vol.41
, pp. 432-441
-
-
Ganim, Z.1
Chung, H.S.2
Tokmakoff, A.3
-
4
-
-
84856189383
-
Spectroscopic studies of protein folding: Linear and nonlinear methods
-
A. Serrano, M. Waegele, and F. Gai Spectroscopic studies of protein folding: linear and nonlinear methods Protein Sci. 21 2012 157 170
-
(2012)
Protein Sci.
, vol.21
, pp. 157-170
-
-
Serrano, A.1
Waegele, M.2
Gai, F.3
-
5
-
-
34548041437
-
Analysis of the kinetics of folding of proteins and peptides using circular dichroism
-
N.J. Greenfield Analysis of the kinetics of folding of proteins and peptides using circular dichroism Nat. Protoc. 1 2006 2891 2899
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2891-2899
-
-
Greenfield, N.J.1
-
6
-
-
33646918845
-
Probing protein folding and conformational transitions with fluorescence
-
DOI 10.1021/cr0404390
-
C.A. Royer Probing protein folding and conformational transitions with fluorescence Chem. Rev. 106 2006 1769 1784 (Pubitemid 43792780)
-
(2006)
Chemical Reviews
, vol.106
, Issue.5
, pp. 1769-1784
-
-
Royer, C.A.1
-
8
-
-
3343000049
-
Methods to study protein folding by stopped-flow FT-IR
-
DOI 10.1016/j.ymeth.2004.03.004, PII S1046202304000490
-
H. Fabian, and D. Naumann Methods to study protein folding by stopped-flow FT-IR Methods 34 2004 28 40 (Pubitemid 38993206)
-
(2004)
Methods
, vol.34
, Issue.1
, pp. 28-40
-
-
Fabian, H.1
Naumann, D.2
-
9
-
-
39149087014
-
Protein folding studied by single-molecule FRET
-
B. Schuler, and W.A. Eaton Protein folding studied by single-molecule FRET Curr. Opin. Struct. Biol. 18 2008 16 26
-
(2008)
Curr. Opin. Struct. Biol.
, vol.18
, pp. 16-26
-
-
Schuler, B.1
Eaton, W.A.2
-
10
-
-
84896504668
-
-
Reference deleted in proof
-
Reference deleted in proof.
-
-
-
-
11
-
-
22444436718
-
Single-molecule fluorescence spectroscopy of protein folding
-
DOI 10.1002/cphc.200400609
-
B. Schuler Single-molecule fluorescence spectroscopy of protein folding Chemphyschem 6 2005 1206 1220 (Pubitemid 41008211)
-
(2005)
ChemPhysChem
, vol.6
, Issue.7
, pp. 1206-1220
-
-
Schuler, B.1
-
12
-
-
57349124448
-
Theory, analysis, and interpretation of single-molecule force spectroscopy experiments
-
O.K. Dudko, G. Hummer, and A. Szabo Theory, analysis, and interpretation of single-molecule force spectroscopy experiments Proc. Natl. Acad. Sci. USA 105 2008 15755 15760
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 15755-15760
-
-
Dudko, O.K.1
Hummer, G.2
Szabo, A.3
-
13
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein folding: A synthesis
-
J.D. Bryngelson, and J.N. Onuchic P.G. Wolynes Funnels, pathways, and the energy landscape of protein folding: a synthesis Proteins 21 1995 167 195
-
(1995)
Proteins
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
14
-
-
0032993447
-
Polymer principles and protein folding
-
K.A. Dill Polymer principles and protein folding Protein Sci. 8 1999 1166 1180 (Pubitemid 29264947)
-
(1999)
Protein Science
, vol.8
, Issue.6
, pp. 1166-1180
-
-
Dill, K.A.1
-
15
-
-
33746037587
-
Dynamics, energetics, and structure in protein folding
-
DOI 10.1021/bi060643c
-
A.N. Naganathan, and U. Doshi V. Muñoz Dynamics, energetics, and structure in protein folding Biochemistry 45 2006 8466 8475 (Pubitemid 44078866)
-
(2006)
Biochemistry
, vol.45
, Issue.28
, pp. 8466-8475
-
-
Naganathan, A.N.1
Doshi, U.2
Fung, A.3
Sadqi, M.4
Munoz, V.5
-
17
-
-
0032147243
-
Protein folding mechanisms and the multidimensional folding funnel
-
DOI 10.1002/(SICI)1097-0134(19980801)32:2<136::AID-PROT2>3.0.CO;2-J
-
N.D. Socci, J.N. Onuchic, and P.G. Wolynes Protein folding mechanisms and the multidimensional folding funnel Proteins 32 1998 136 158 (Pubitemid 28363897)
-
(1998)
Proteins: Structure, Function and Genetics
, vol.32
, Issue.2
, pp. 136-158
-
-
Socci, N.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
20
-
-
0036535895
-
Protein folding: The free energy surface
-
DOI 10.1016/S0959-440X(02)00304-4
-
M. Gruebele Protein folding: the free energy surface Curr. Opin. Struct. Biol. 12 2002 161 168 (Pubitemid 34327475)
-
(2002)
Current Opinion in Structural Biology
, vol.12
, Issue.2
, pp. 161-168
-
-
Gruebele, M.1
-
22
-
-
84876005630
-
Improvements in Markov state model construction reveal many non-native interactions in the folding of NTL9
-
R.S. Christian, and S.P. Vijay Improvements in Markov state model construction reveal many non-native interactions in the folding of NTL9 J. Chem. Theory Comput. 9 2013 2000 2009
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 2000-2009
-
-
Christian, R.S.1
Vijay, S.P.2
-
23
-
-
84868122477
-
Simple few-state models reveal hidden complexity in protein folding
-
K.A. Beauchamp, and R. McGibbon V.S. Pande Simple few-state models reveal hidden complexity in protein folding Proc. Natl. Acad. Sci. USA 109 2012 17807 17813
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 17807-17813
-
-
Beauchamp, K.A.1
McGibbon, R.2
Pande, V.S.3
-
24
-
-
84875708124
-
Native states of fast-folding proteins are kinetic traps
-
A. Dickson, and C.L. Brooks 3rd Native states of fast-folding proteins are kinetic traps J. Am. Chem. Soc. 135 2013 4729 4734
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 4729-4734
-
-
Dickson, A.1
Brooks III, C.L.2
-
26
-
-
34548165708
-
Infrared spectroscopy of proteins
-
DOI 10.1016/j.bbabio.2007.06.004, PII S0005272807001375
-
A. Barth Infrared spectroscopy of proteins Biochim. Biophys. Acta 1767 2007 1073 1101 (Pubitemid 47313388)
-
(2007)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1767
, Issue.9
, pp. 1073-1101
-
-
Barth, A.1
-
27
-
-
0036880493
-
What vibrations tell us about proteins
-
DOI 10.1017/S0033583502003815
-
A. Barth, and C. Zscherp What vibrations tell us about proteins Q. Rev. Biophys. 35 2002 369 430 (Pubitemid 36207229)
-
(2002)
Quarterly Reviews of Biophysics
, vol.35
, Issue.4
, pp. 369-430
-
-
Barth, A.1
Zscherp, C.2
-
28
-
-
84880770638
-
Amide i two-dimensional infrared spectroscopy: Methods for visualizing the vibrational structure of large proteins
-
C. Baiz, M. Reppert, and A. Tokmakoff Amide I two-dimensional infrared spectroscopy: methods for visualizing the vibrational structure of large proteins J. Phys. Chem. A 117 2012 5955 5961
-
(2012)
J. Phys. Chem. A
, vol.117
, pp. 5955-5961
-
-
Baiz, C.1
Reppert, M.2
Tokmakoff, A.3
-
29
-
-
33749438763
-
Spectral signatures of heterogeneous protein ensembles revealed by MD simulations of 2DIR spectra
-
DOI 10.1529/biophysj.106.088070
-
Z. Ganim, and A. Tokmakoff Spectral signatures of heterogeneous protein ensembles revealed by MD Simulations of 2DIR spectra Biophys. J. 91 2006 2636 2646 (Pubitemid 44511717)
-
(2006)
Biophysical Journal
, vol.91
, Issue.7
, pp. 2636-2646
-
-
Ganim, Z.1
Tokmakoff, A.2
-
31
-
-
84860232114
-
Coherent two-dimensional infrared spectroscopy: Quantitative analysis of protein secondary structure in solution
-
C.R. Baiz, and C.S. Peng A. Tokmakoff Coherent two-dimensional infrared spectroscopy: quantitative analysis of protein secondary structure in solution Analyst (Lond.) 137 2012 1793 1799
-
(2012)
Analyst (Lond.)
, vol.137
, pp. 1793-1799
-
-
Baiz, C.R.1
Peng, C.S.2
Tokmakoff, A.3
-
33
-
-
77956230598
-
Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy
-
C.T. Middleton, and A.M. Woys M.T. Zanni Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy Methods 52 2010 12 22
-
(2010)
Methods
, vol.52
, pp. 12-22
-
-
Middleton, C.T.1
Woys, A.M.2
Zanni, M.T.3
-
34
-
-
43449136205
-
Coherent two-dimensional optical spectroscopy
-
DOI 10.1021/cr078377b
-
M. Cho Coherent two-dimensional optical spectroscopy Chem. Rev. 108 2008 1331 1418 (Pubitemid 351662365)
-
(2008)
Chemical Reviews
, vol.108
, Issue.4
, pp. 1331-1418
-
-
Cho, M.1
-
35
-
-
84896512495
-
-
Reference deleted in proof
-
Reference deleted in proof.
-
-
-
-
36
-
-
79953275033
-
Development and validation of transferable amide i vibrational frequency maps for peptides
-
L. Wang, and C.T. Middleton J.L. Skinner Development and validation of transferable amide I vibrational frequency maps for peptides J. Phys. Chem. B 115 2011 3713 3724
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 3713-3724
-
-
Wang, L.1
Middleton, C.T.2
Skinner, J.L.3
-
37
-
-
77956071045
-
Melting of a beta-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations
-
A.W. Smith, and J. Lessing J. Knoester Melting of a beta-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations J. Phys. Chem. B 114 2010 10913 10924
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 10913-10924
-
-
Smith, A.W.1
Lessing, J.2
Knoester, J.3
-
38
-
-
35348886062
-
Anton, a special-purpose machine for molecular dynamics simulation
-
DOI 10.1145/1250662.1250664, ISCA'07: 34th Annual International Symposium on Computer Architecture, Conference Proceedings
-
D.E. Shaw, and M.M. Deneroff J.C. Chao Anton, a special-purpose machine for molecular dynamics simulation ACM 35 2007 1 12 (Pubitemid 47582086)
-
(2007)
Proceedings - International Symposium on Computer Architecture
, pp. 1-12
-
-
Shaw, D.E.1
Deneroff, M.M.2
Dror, R.O.3
Kuskin, J.S.4
Larson, R.H.5
Salmon, J.K.6
Young, C.7
Batson, B.8
Bowers, K.J.9
Chao, J.C.10
Eastwood, M.P.11
Gagliardo, J.12
Grossman, J.P.13
Ho, C.R.14
Ierardi, D.J.15
Kolossvary, I.16
Klepeis, J.L.17
Layman, T.18
McLeavey, C.19
Moraes, M.A.20
Mueller, R.21
Priest, E.C.22
Shan, Y.23
Spengler, J.24
Theobald, M.25
Towles, B.26
Wang, S.C.27
more..
-
39
-
-
84856878089
-
Millisecond-Scale Molecular Dynamics Simulations on Anton
-
D.E. Shaw, and R.O. Dror K.J. Bowers Millisecond-Scale Molecular Dynamics Simulations on Anton IEEE 2009 1 11
-
(2009)
IEEE
, pp. 1-11
-
-
Shaw, D.E.1
Dror, R.O.2
Bowers, K.J.3
-
40
-
-
77956220940
-
Everything you wanted to know about Markov State Models but were afraid to ask
-
V.S. Pande, K. Beauchamp, and G.R. Bowman Everything you wanted to know about Markov State Models but were afraid to ask Methods 52 2010 99 105
-
(2010)
Methods
, vol.52
, pp. 99-105
-
-
Pande, V.S.1
Beauchamp, K.2
Bowman, G.R.3
-
41
-
-
80053254053
-
Probing molecular kinetics with Markov models: Metastable states, transition pathways and spectroscopic observables
-
J.H. Prinz, B. Keller, and F. Noé Probing molecular kinetics with Markov models: metastable states, transition pathways and spectroscopic observables Phys. Chem. Chem. Phys. 13 2011 16912 16927
-
(2011)
Phys. Chem. Chem. Phys.
, vol.13
, pp. 16912-16927
-
-
Prinz, J.H.1
Keller, B.2
Noé, F.3
-
42
-
-
84874073269
-
Microsecond folding experiments and simulations: A match is made
-
M.B. Prigozhin, and M. Gruebele Microsecond folding experiments and simulations: a match is made Phys. Chem. Chem. Phys. 15 2013 3372 3388
-
(2013)
Phys. Chem. Chem. Phys.
, vol.15
, pp. 3372-3388
-
-
Prigozhin, M.B.1
Gruebele, M.2
-
44
-
-
0037470575
-
Rapid cooperative two-state folding of a miniature α-β protein and design of a thermostable variant
-
DOI 10.1016/S0022-2836(03)00028-7
-
J.-C. Horng, V. Moroz, and D.P. Raleigh Rapid cooperative two-state folding of a miniature α-β protein and design of a thermostable variant J. Mol. Biol. 326 2003 1261 1270 (Pubitemid 36263396)
-
(2003)
Journal of Molecular Biology
, vol.326
, Issue.4
, pp. 1261-1270
-
-
Horng, J.-C.1
Moroz, V.2
Raleigh, D.P.3
-
45
-
-
79959720287
-
How robust are protein folding simulations with respect to force field parameterization?
-
S. Piana, K. Lindorff-Larsen, and D.E. Shaw How robust are protein folding simulations with respect to force field parameterization? Biophys. J. 100 2011 L47 L49
-
(2011)
Biophys. J.
, vol.100
-
-
Piana, S.1
Lindorff-Larsen, K.2
Shaw, D.E.3
-
46
-
-
77957937199
-
Atomic-level characterization of the structural dynamics of proteins
-
D.E. Shaw, and P. Maragakis W. Wriggers Atomic-level characterization of the structural dynamics of proteins Science 330 2010 341 346
-
(2010)
Science
, vol.330
, pp. 341-346
-
-
Shaw, D.E.1
Maragakis, P.2
Wriggers, W.3
-
47
-
-
34547251842
-
Transient two-dimensional IR spectrometer for probing nanosecond temperature-jump kinetics
-
063101-1-063101-10
-
H.S. Chung, and M. Khalil A. Tokmakoff Transient two-dimensional IR spectrometer for probing nanosecond temperature-jump kinetics Rev. Sci. Instrum. 78 2007 063101-1-063101-10
-
(2007)
Rev. Sci. Instrum.
, vol.78
-
-
Chung, H.S.1
Khalil, M.2
Tokmakoff, A.3
-
48
-
-
73349090887
-
Heterodyne-detected dispersed vibrational echo spectroscopy
-
K.C. Jones, Z. Ganim, and A. Tokmakoff Heterodyne-detected dispersed vibrational echo spectroscopy J. Phys. Chem. A 113 2009 14060 14066
-
(2009)
J. Phys. Chem. A
, vol.113
, pp. 14060-14066
-
-
Jones, K.C.1
Ganim, Z.2
Tokmakoff, A.3
-
49
-
-
84855397076
-
Transient two-dimensional spectroscopy with linear absorption corrections applied to temperature-jump two-dimensional infrared
-
K. Jones, and Z. Ganim A. Tokmakoff Transient two-dimensional spectroscopy with linear absorption corrections applied to temperature-jump two-dimensional infrared JOSA B 29 2012 118 129
-
(2012)
JOSA B
, vol.29
, pp. 118-129
-
-
Jones, K.1
Ganim, Z.2
Tokmakoff, A.3
-
50
-
-
84876005630
-
Improvements in Markov state model construction reveal many non-native interactions in the folding of NTL9
-
C.R. Schwantes, and V.S. Pande Improvements in Markov state model construction reveal many non-native interactions in the folding of NTL9 J. Chem. Theory Comput. 9 2013 2000 2009
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 2000-2009
-
-
Schwantes, C.R.1
Pande, V.S.2
-
51
-
-
0021938963
-
Clustering to minimize the maximum intercluster distance
-
T.F. Gonzalez Clustering to minimize the maximum intercluster distance Theor. Comput. Sci. 38 1985 293 306
-
(1985)
Theor. Comput. Sci.
, vol.38
, pp. 293-306
-
-
Gonzalez, T.F.1
-
52
-
-
76149136021
-
Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39)
-
V.A. Voelz, and G.R. Bowman V.S. Pande Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39) J. Am. Chem. Soc. 132 2010 1526 1528
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 1526-1528
-
-
Voelz, V.A.1
Bowman, G.R.2
Pande, V.S.3
-
53
-
-
79952221890
-
Wikipedia information flow analysis reveals the scale-free architecture of the semantic space
-
A.P. Masucci, and A. Kalampokis E. Hernández-García Wikipedia information flow analysis reveals the scale-free architecture of the semantic space PLoS ONE 6 2011 e17333
-
(2011)
PLoS ONE
, vol.6
, pp. 17333
-
-
Masucci, A.P.1
Kalampokis, A.2
Hernández-García, E.3
-
54
-
-
33746813977
-
Modeling the amide i bands of small peptides
-
44312-1-44312-9
-
T.L. Jansen, and A.G. Dijkstra J. Knoester Modeling the amide I bands of small peptides J. Chem. Phys. 125 2006 44312-1-44312-9
-
(2006)
J. Chem. Phys.
, vol.125
-
-
Jansen, T.L.1
Dijkstra, A.G.2
Knoester, J.3
-
55
-
-
31544436644
-
A transferable electrostatic map for solvation effects on amide i vibrations and its application to linear and two-dimensional spectroscopy
-
044502-1-044502-11
-
T.L. Jansen, and J. Knoester A transferable electrostatic map for solvation effects on amide I vibrations and its application to linear and two-dimensional spectroscopy J. Chem. Phys. 124 2006 044502-1-044502-11
-
(2006)
J. Chem. Phys.
, vol.124
-
-
Jansen, T.L.1
Knoester, J.2
-
56
-
-
27344454932
-
GROMACS: Fast, flexible, and free
-
DOI 10.1002/jcc.20291
-
D. Van Der Spoel, and E. Lindahl H.J.C. Berendsen GROMACS: fast, flexible, and free J. Comput. Chem. 26 2005 1701 1718 (Pubitemid 43076182)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.C.6
-
57
-
-
0037069354
-
Characterization of large peptide fragments derived from the N-terminal domain of the ribosomal protein L9: Definition of the minimum folding motif and characterization of local electrostatic interactions
-
DOI 10.1021/bi026410c
-
J.C. Horng, and V. Moroz D.P. Raleigh Characterization of large peptide fragments derived from the N-terminal domain of the ribosomal protein L9: definition of the minimum folding motif and characterization of local electrostatic interactions Biochemistry 41 2002 13360 13369 (Pubitemid 35303894)
-
(2002)
Biochemistry
, vol.41
, Issue.45
, pp. 13360-13369
-
-
Horng, J.-C.1
Moroz, V.2
Rigotti, D.J.3
Fairman, R.4
Raleigh, D.P.5
-
59
-
-
2442589387
-
Signatures of beta-sheet secondary structures in linear and two-dimensional infrared spectroscopy
-
C.M. Cheatum, A. Tokmakoff, and J. Knoester Signatures of beta-sheet secondary structures in linear and two-dimensional infrared spectroscopy J. Chem. Phys. 120 2004 8201 8215
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 8201-8215
-
-
Cheatum, C.M.1
Tokmakoff, A.2
Knoester, J.3
-
60
-
-
43449083122
-
Two-dimensional infrared spectroscopy of beta-sheets and hairpins
-
619a-619a
-
A.W. Smith, and C.M. Cheatum A. Tokmakoff Two-dimensional infrared spectroscopy of beta-sheets and hairpins Biophys. J. 86 2004 619a-619a
-
(2004)
Biophys. J.
, vol.86
-
-
Smith, A.W.1
Cheatum, C.M.2
Tokmakoff, A.3
-
62
-
-
35648955156
-
Probing local structural events in β-hairpin unfolding with transient nonlinear infrared spectroscopy
-
DOI 10.1002/anie.200701172
-
A.W. Smith, and A. Tokmakoff Probing local structural events in beta-hairpin unfolding with transient nonlinear infrared spectroscopy Angew. Chem. Int. Ed. Engl. 46 2007 7984 7987 (Pubitemid 350033472)
-
(2007)
Angewandte Chemie - International Edition
, vol.46
, Issue.42
, pp. 7984-7987
-
-
Smith, A.W.1
Tokmakoff, A.2
-
63
-
-
33747463656
-
The unfolded state of NTL9 is compact in the absence of denaturant
-
DOI 10.1021/bi060636o
-
B. Anil, and Y. Li D.P. Raleigh The unfolded state of NTL9 is compact in the absence of denaturant Biochemistry 45 2006 10110 10116 (Pubitemid 44257405)
-
(2006)
Biochemistry
, vol.45
, Issue.33
, pp. 10110-10116
-
-
Anil, B.1
Li, Y.2
Cho, J.-H.3
Raleigh, D.P.4
-
64
-
-
84876220105
-
The denatured state ensemble contains significant local and long-range structure under native condition: Analysis of the N-terminal domain of the ribosomal protein L9
-
W. Meng, and B. Luan D. Raleigh The denatured state ensemble contains significant local and long-range structure under native condition: analysis of the N-terminal domain of the ribosomal protein L9 Biochemistry 52 2013 2662 2671
-
(2013)
Biochemistry
, vol.52
, pp. 2662-2671
-
-
Meng, W.1
Luan, B.2
Raleigh, D.3
-
65
-
-
78651277458
-
A series of PDB related databases for everyday needs
-
R.P. Joosten, and T.A. te Beek G. Vriend A series of PDB related databases for everyday needs Nucleic Acids Res. 39 Database issue 2011 D411 D419
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.DATABASE ISSUE
-
-
Joosten, R.P.1
Te Beek, T.A.2
Vriend, G.3
-
66
-
-
33644767320
-
Visualization and characterization of the infrared active amide i vibrations of proteins
-
DOI 10.1021/jp053956a
-
H.S. Chung, and A. Tokmakoff Visualization and characterization of the infrared active amide I vibrations of proteins J. Phys. Chem. B 110 2006 2888 2898 (Pubitemid 43342885)
-
(2006)
Journal of Physical Chemistry B
, vol.110
, Issue.6
, pp. 2888-2898
-
-
Chung, H.S.1
Tokmakoff, A.2
-
67
-
-
68849093754
-
Slow transition between two β-strand registers is dictated by protein unfolding
-
M.R. Evans, and K.H. Gardner Slow transition between two β-strand registers is dictated by protein unfolding J. Am. Chem. Soc. 131 2009 11306 11307
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 11306-11307
-
-
Evans, M.R.1
Gardner, K.H.2
-
68
-
-
1942521649
-
Thermodynamics and kinetics of non-native interactions in protein folding: A single point mutant significantly stabilizes the N-terminal domain of L9 by modulating non-native interactions in the denatured state
-
DOI 10.1016/j.jmb.2004.02.073, PII S0022283604002918
-
J.-H. Cho, S. Sato, and D.P. Raleigh Thermodynamics and kinetics of non-native interactions in protein folding: a single point mutant significantly stabilizes the N-terminal domain of L9 by modulating non-native interactions in the denatured state J. Mol. Biol. 338 2004 827 837 (Pubitemid 38507425)
-
(2004)
Journal of Molecular Biology
, vol.338
, Issue.4
, pp. 827-837
-
-
Cho, J.-H.1
Sato, S.2
Raleigh, D.P.3
-
69
-
-
0242443693
-
Force fields for protein simulations
-
DOI 10.1016/S0065-3233(03)66002-X
-
J.W. Ponder, and D.A. Case Force fields for protein simulations Adv. Protein Chem. 66 2003 27 85 (Pubitemid 37392314)
-
(2003)
Advances in Protein Chemistry
, vol.66
, pp. 27-85
-
-
Ponder, J.W.1
Case, D.A.2
-
72
-
-
79551684199
-
The folding of single domain proteins - Have we reached a consensus?
-
T.R. Sosnick, and D. Barrick The folding of single domain proteins - have we reached a consensus? Curr. Opin. Struct. Biol. 21 2011 12 24
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 12-24
-
-
Sosnick, T.R.1
Barrick, D.2
-
73
-
-
33846916730
-
Malleability of protein folding pathways: A simple reason for complex behaviour
-
DOI 10.1016/j.sbi.2007.01.008, PII S0959440X07000097, Foldinf and Binding / Protein-Nucleic Interactions
-
M.O. Lindberg, and M. Oliveberg Malleability of protein folding pathways: a simple reason for complex behaviour Curr. Opin. Struct. Biol. 17 2007 21 29 (Pubitemid 46240818)
-
(2007)
Current Opinion in Structural Biology
, vol.17
, Issue.1
, pp. 21-29
-
-
Lindberg, M.O.1
Oliveberg, M.2
-
74
-
-
1842298212
-
From levinthal to pathways to funnels
-
DOI 10.1038/nsb0197-10
-
K.A. Dill, and H.S. Chan From Levinthal to pathways to funnels Nat. Struct. Biol. 4 1997 10 19 (Pubitemid 27020916)
-
(1997)
Nature Structural Biology
, vol.4
, Issue.1
, pp. 10-19
-
-
Dill, K.A.1
Chan, H.S.2
-
75
-
-
0028929556
-
Principles of protein folding - A perspective from simple exact models
-
K. Dill, and S. Bromberg H. Chan Principles of protein folding-a perspective from simple exact models Protein Sci. 4 1995 561 602
-
(1995)
Protein Sci.
, vol.4
, pp. 561-602
-
-
Dill, K.1
Bromberg, S.2
Chan, H.3
-
77
-
-
0032993447
-
Polymer principles and protein folding
-
K. Dill Polymer principles and protein folding Protein Sci. 8 1999 1166 1180 (Pubitemid 29264947)
-
(1999)
Protein Science
, vol.8
, Issue.6
, pp. 1166-1180
-
-
Dill, K.A.1
-
78
-
-
33645148429
-
Low barrier kinetics: Dependence on observables and free energy surface
-
H. Ma, and M. Gruebele Low barrier kinetics: dependence on observables and free energy surface J. Comput. Chem. 27 2006 125 134
-
(2006)
J. Comput. Chem.
, vol.27
, pp. 125-134
-
-
Ma, H.1
Gruebele, M.2
-
79
-
-
77957658987
-
Transient vibrational echo versus transient absorption spectroscopy: A direct experimental and theoretical comparison
-
C.R. Baiz, R. McCanne, and K.J. Kubarych Transient vibrational echo versus transient absorption spectroscopy: a direct experimental and theoretical comparison Appl. Spectorsc. 64 2010 1037 1044
-
(2010)
Appl. Spectorsc.
, vol.64
, pp. 1037-1044
-
-
Baiz, C.R.1
McCanne, R.2
Kubarych, K.J.3
-
80
-
-
83755162489
-
Differential ordering of the protein backbone and side chains during protein folding revealed by site-specific recombinant infrared probes
-
K.S. Nagarajan, and H. Taskent-Sezgin R. Dyer Differential ordering of the protein backbone and side chains during protein folding revealed by site-specific recombinant infrared probes J. Am. Chem. Soc. 133 2011 20335 20340
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 20335-20340
-
-
Nagarajan, K.S.1
Taskent-Sezgin, H.2
Dyer, R.3
|