Signatures of β-sheet secondary structures in linear and two-dimensional infrared spectroscopy

Journal of Chemical Physics

Volumn 120, Issue 17, 2004, Pages 8201-8215

  Cheatum, Christopher M ^a,b   Tokmakoff, Andrei ^a,b   Knoester, Jasper ^b  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b UNIVERSITY OF GRONINGEN   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDES; INERSTRAND INTERACTIONS; SPECTROSCOPIC MARKERS; TRANSITION-DIPOLE COUPLINGS;

BOUNDARY CONDITIONS; CHEMICAL BONDS; CONFORMATIONS; EIGENVALUES AND EIGENFUNCTIONS; FUNCTIONS; HAMILTONIANS; INFRARED SPECTROSCOPY; MATHEMATICAL MODELS; MOLECULAR STRUCTURE; MOLECULAR VIBRATIONS; QUANTUM THEORY;

PROTEINS;

AMIDE;

ARTICLE; CHEMICAL MODEL; CHEMISTRY; HYDROGEN BOND; INFRARED SPECTROPHOTOMETRY; METHODOLOGY; OSCILLOMETRY; PHYSICAL CHEMISTRY; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; STATISTICAL MODEL;

AMIDES; CHEMISTRY, PHYSICAL; HYDROGEN BONDING; MODELS, CHEMICAL; MODELS, STATISTICAL; OSCILLOMETRY; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; SPECTROPHOTOMETRY, INFRARED;

EID: 2442589387     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1689637     Document Type: Article

References (58)

1. S. Krimm and J. Bandekar, Adv. Protein Chem. 38, 181 (1986).
2. M. Jackson and H. H. Mantsch, Crit. Rev. Biochem. Mol. Biol. 30, 95 (1995).
3. T. F. Kumosinski and J. J. Unruh, Talanta 43, 199 (1996).
4. W. K. Surewicz, H. H. Mantsch, and D. Chapman, Biochemistry 32, 389 (1993).
5. M. Khalil, N. Demirdöven, and A. Tokmakoff, J. Phys. Chem. B. 107, 5258 (2003).
6. S. Mukamel, Annu. Rev. Phys. Chem. 51, 691 (2000).
7. M. T. Zanni, S. Gnanakaran, J. Stenger, and R. M. Hochstrasser, J. Phys. Chem. B 105, 6520 (2001).
8. M. Khalil and A. Tokmakoff, Chem. Phys. 266, 213 (2001).
9. O. Golonzka, M. Khalil, N. Demirdöven, and A. Tokmakoff, Phys. Rev. Lett. 86, 2154 (2001).
10. O. Golonzka, M. Khalil, N. Demirdöven, and A. Tokmakoff, J. Chem. Phys. 115, 10814 (2001).
11. R. M. Hochstrasser, M. C. Asplund, P. Hamm, and N. H. Ge, J. Chin. Chem. Soc. (Taipei) 47, 843 (2000).
12. M. T. Zanni, N. H. Ge, Y. S. Kim, and R. M. Hochstrasser, Proc. Natl. Acad. Sci. U.S.A. 98, 11265 (2001).
13. O. Golonzka and A. Tokmakoff, J. Chem. Phys. 115, 297 (2001).
14. S. Woutersen, R. Pfister, P. Hamm, Y. G. Mu, D. S. Kosov, and G. Stock, J. Chem. Phys. 117, 6833 (2002).
15. R. M. Hochstrasser, N. H. Ge, S. Gnanakaran, and M. T. Zanni, Bull. Chem. Soc, Jpn. 75, 1103 (2002).
16. N. H. Ge and R. M. Hochstrasser, PhysChemComm 5, 17 (2002).
17. N. Demirdöven, M. Khalil, and A. Tokmakoff, Phys. Rev. Lett. 89, 237401 (2002).
18. S. Woutersen, Y. G. Mu, G. Stock, and P. Hamm, Proc. Natl. Acad. Sci. U.S.A. 98, 11 254 (2001).
19. N. Demirdöven, M. Khalil, O. Golonzka, and A. Tokmakoff, J. Phys. Chem, A 105, 8025 (2001).
20. S. Woutersen and P. Hamm, J. Phys.: Condens. Matter 14, R1035 (2002).
21. M. T. Zanni and R. M. Hochstrasser, Curr. Opin. Struct. Biol. 11, 516 (2001).
22. S. Woutersen and P. Hamm, J. Chem. Phys. 114, 2727 (2001).
23. S. Woutersen and P. Hamm, J. Chem. Phys. 115, 7737 (2001).
24. S. Woutersen and P. Hamm, J. Phys. Chem. B 104, 11316 (2000).
25. P. Hamm, M. Lim, W. F. DeGrado, and R. M. Hochstrasser, J. Chem. Phys. 112, 1907 (2000).
26. P. Hamm, M. H. Lim, and R. M. Hochstrasser, J. Phys. Chem. B 102, 6123 (1998).
27. P. Hamm and S. Wouterson, Bull. Chem. Soc. Jpn. 75, 985 (2002).
28. S. Ham and M. Cho, J. Chem. Phys. 118, 6915 (2003).
29. S. Y. Cha, S. H. Ham, and M. H. Cho, J. Chem. Phys. 117, 740 (2002).
30. H. Torii and M. Tasumi, J. Raman Spectrosc. 29, 81 (1998).
31. R. Silva, S. C. Yasui, J. Kubelka, F. Formaggio, M. Crisma, C. Toniolo, and T. A. Keiderling, Biopolymers 65, 229 (2002).
32. J. Hilario, J. Kubelka, F. A. Syud, S. H. Gellman, and T. A. Keiderling, Biopolymers 67, 233 (2002).
33. J. Kubelka and T. A. Keiderling, J. Am. Chem. Soc. 123, 12048 (2001).
34. T. Miyazawa, J. Chem. Phys. 32, 1647 (1960).
35. T. Miyazawa and E. R. Blout, J. Am. Chem. Soc. 83, 712 (1961).
36. J. Bandekar and S. Krimm, Biopolymers 27, 885 (1988).
37. J. Bandekar and S. Krimm, Biopolymers 27, 909 (1988).
38. H. Torii and M. Tasumi, J. Chem. Phys. 96, 3379 (1992).
39. N. A. Nevskaya and Y. N. Chirgadze, Biopolymers 15, 637 (1976).
40. Y. N. Chirgadze and N. A. Nevskaya, Biopolymers 15, 607 (1976).
41. Y. N. Chirgadze and N. A. Nevskaya, Biopolymers 15, 627 (1976).
42. J. A. Leegwater and S. Mukamel, Phys. Rev. A 46, 452 (1992).
43. V. Chernyak, N. J. Wang, and S. Mukamel, Phys. Rep. 263, 213 (1995).
44. W. M. Zhang, V. Chernyak, and S. Mukamel, J. Chem. Phys. 110, 5011 (1999).
45. G. Juzeliunas and J. Knoester, J. Chem. Phys. 112, 2325 (2000).
46. M. Bednarz and J. Knoester, J. Phys. Chem. B 105, 12913 (2001).
47. C. Didraga, J. A. Klugkist, and J. Knoester, J. Phys. Chem. B 106, 11474 (2002).
48. C. L. Nesloney and J. W. Kelly, Bioorgan. Med. Chem. 4, 739 (1996).
49. M. T. Zanni, M. C. Asplund, and R. M. Hochstrasser, J. Chem. Phys. 114, 4579 (2001).
50. A. S. Davydov, Theory of Molecular Excitons (Plenum, New York, 1971).
51. S. Mukamel, Principles of Nonlinear Optical Spectroscopy (Oxford University Press, New York, 1995).
52. M. Khalil, N. Demirdöven, and A. Tokmakoff, Phys. Rev. Lett. 90, 047401 (2003).
53. C. Scheurer and S. Mukamel, J. Chem. Phys. 115, 4989 (2001).
54. J. Y. Sung and R. J. Silbey, J. Chem. Phys. 115, 9266 (2001).
55. H. Fidder, J. Knoester, and D. A. Wiersma, J. Chem. Phys. 95, 7880 (1991).
56. J. H. Choi, S. Ham, and M. Cho, J. Chem, Phys. 117, 6821 (2002).
57. H. Sihyun, C. Sangyob, J. H. Choi, and M. Cho, J. Chem. Phys. 119, 1451 (2003).
58. L. D. Bakalis and J. Knoester, J. Phys. Chem. B 103, 6620 (1999).