Probing the force-induced dissociation of aptamer-protein complexes

Analytical Chemistry

Volumn 86, Issue 6, 2014, Pages 3084-3091

  Pérez Ruiz, Elena ^a   Kemper, Marijn ^b   Spasic, Dragana ^a   Gils, Ann ^c   Van Ijzendoorn, Leo J ^b   Lammertyn, Jeroen ^a   Prins, Menno W J ^b,d  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b EINDHOVEN UNIVERSITY OF TECHNOLOGY   (Netherlands)

^c DEPARTMENT OF PHARMACEUTICAL AND PHARMACOLOGICAL SCIENCES   (Belgium)

^d PHILIPS RESEARCH LABORATORIES   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEINS; RATE CONSTANTS;

DISSOCIATION KINETICS; DISSOCIATION PROCESS; DISSOCIATION RATE CONSTANT; FIBER-OPTIC TECHNOLOGY; FUNDAMENTAL RESEARCH; INDUCED DISSOCIATION; INTERMEDIATE STATE; PROTEIN INTERACTION;

DISSOCIATION;

APTAMER; PROTEIN; PROTEIN BINDING;

CHEMISTRY; NUCLEOTIDE SEQUENCE; SURFACE PLASMON RESONANCE;

APTAMERS, NUCLEOTIDE; BASE SEQUENCE; PROTEIN BINDING; PROTEINS; SURFACE PLASMON RESONANCE;

EID: 84896514314     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac404107s     Document Type: Article

References (41)

1. Tuerk, C.; Gold, L. Science 1990, 249, 505-510
2. de-los-Santos-álvarez, N.; Lobo-Castañón, M. J.; Miranda-Ordieres, A. J.; Tuñón-Blanco, P. TrAC, Trends Anal. Chem. 2008, 27, 437-446
3. Cho, E. J.; Lee, J.-W.; Ellington, A. D. Annu. Rev. Anal. Chem. 2009, 2, 241-264
4. Strehlitz, B.; Reinemann, C.; Linkorn, S.; Stoltenburg, R. Bioanal. Rev. 2012, 4, 1-30
5. Chang, Y. M.; Donovan, M. J.; Tan, W. J. Nucleic Acids 2013, 2013, 817350
6. Hong, P.; Li, W.; Li, J. Sensors 2012, 12, 1181-1193
7. Lee, J. H.; Canny, M. D.; De Erkenez, A.; Krilleke, D.; Ng, Y. S.; Shima, D. T.; Pardi, A.; Jucker, F. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 18902-18907
8. Keefe, A. D.; Pai, S.; Ellington, A. Nat. Rev. Drug Discovery 2010, 9, 537-550
9. Gopinath, S. C. B. Sens. Actuators, B 2010, 150, 722-733
10. Pollet, J.; Delport, F.; Janssen, K. P.; Jans, K.; Maes, G.; Pfeiffer, H.; Wevers, M.; Lammertyn, J. Biosens. Bioelectron. 2009, 25, 864-869
11. Bi, N.; Sun, Y.; Tian, Y.; Song, D.; Wang, L.; Wang, J.; Zhang, H. Spectrochim. Acta, Part A 2010, 75, 1163-1167
12. Kimoto, M.; Yamashige, R.; Matsunaga, K.-I.; Yokoyama, S.; Hirao, I. Nat. Biotechnol. 2013, 31, 453-457
13. Gupta, A.; Nuber, N.; Esslinger, C.; Wittenbrink, M.; Treder, M.; Landshammer, A.; Noguchi, T.; Kelly, M.; Gnjatic, S.; Ritter, E.; Von Boehmer, L.; Nishikawa, H.; Shiku, H.; Old, L.; Ritter, G.; Knuth, A.; Van den Broek, M. Cancer Immunity 2013, 13, 3
14. Malmborg, A. C.; Dueñas, M.; Ohlin, M.; Söderlind, E.; Borrebaeck, C. A. K. J. Pharm. Sci. 1996, 198, 51-57
15. Day, Y. S. N.; Myszka, D. G. J. Pharm. Sci. 2003, 92, 333-343
16. Madden, J.; Dod, J. R.; Godemann, R.; Kraemer, J.; Smith, M.; Biniszkiewicz, M.; Hallett, D. J.; Barker, J.; Dyekjaer, J. D.; Hesterkamp, T. Bioorg. Med. Chem. Lett. 2010, 20, 5329-5333
17. Evans, E. Annu. Rev. Biophys. Biomol. Struct. 2001, 30, 105-128
18. Allison, D. P.; Hinterdorfer, P.; Han, W. Curr. Opin. Biotechnol. 2002, 13, 47-51
19. Evans, E.; Ritchie, K.; Merkel, R. Biophys. J. 1995, 68, 2580-2587
20. Merkel, R.; Nassoy, P.; Leung, a; Ritchie, K.; Evans, E. Nature 1999, 397, 50-53
21. Moffitt, J. R.; Chemla, Y. R.; Smith, S. B.; Bustamante, C. Annu. Rev. Biochem. 2008, 77, 205-228
22. Neuman, K. C.; Nagy, A. Nat. Methods 2008, 5, 491-505
23. Jacob, A.; Van IJzendoorn, L. J.; De Jong, A. M.; Prins, M. W. J. Anal. Chem. 2012, 84, 9287-94
24. Wiegand, T. W.; Williams, P. B.; Dreskin, S. C.; Jouvin, M.; Kinet, J.; Tasset, D. J. Immunol. 1996, 157, 221-230
25. Scurlock, A. M.; Burks, a. W. Ann. Allergy, Asthma, Immunol. 2004, 93, S12-S18
26. Tran, D. T.; Knez, K.; Janssen, K. P.; Pollet, J.; Spasic, D.; Lammertyn, J. Biosens. Bioelectron. 2013, 43, 245-251
27. Kemper, M. Non-specific Protein-Surface Interactions in the Context of Particle Based Biosensors. Ph.D. thesis, Eindhoven University of Technology, 2013, pp 51-57.
28. Bell, G. Science 1978, 200, 618-627
29. Haber, C.; Wirtz, D. Rev. Sci. Instrum. 2000, 71, 4561
30. Staros, J.; Wright, W. Anal. Biochem. 1986, 222, 220-222
31. Song, S.; Wang, L.; Li, J.; Fan, C.; Zhao, J. TrAC, Trends Anal. Chem. 2008, 27, 108-117
32. Danilowicz, C.; Greenfield, D.; Prentiss, M. Anal. Chem. 2005, 77, 3023-3028
33. Sagvolden, G.; Giaever, I.; Feder, J. Langmuir 1998, 7463, 5984-5987
34. Lee, C.-K.; Wang, Y.-M.; Huang, L.-S.; Lin, S. Micron 2007, 38, 446-461
35. Lin, C. H.; Patel, D. J. Chem. Biol. 1997, 4, 817-832
36. Robertson, S. A; Harada, K.; Frankel, A. D.; Wemmer, D. E. Biochemistry 2000, 39, 946-954
37. Privalov, P. L.; Dragan, A. I.; Crane-Robinson, C. Nucleic Acids Res. 2011, 39, 2483-2491
38. Marcovitz, A.; Levy, Y. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 17957-17962
39. Ge, L.; Jin, G.; Fang, X. Langmuir 2012, 28, 707-713
40. Greenleaf, W. J.; Frieda, K. L.; Foster, D. A. N.; Michael, T.; Block, S. M. Science 2009, 319, 630-633
41. Friddle, R. W.; Noy, A.; De Yoreo, J. J. Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 13573-13578