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Volumn 9, Issue 2, 2014, Pages

Genome-wide methylation analyses in glioblastoma multiforme

Author keywords

[No Author keywords available]

Indexed keywords

5 HYDROMETHYLDEOXYCYTIDINE; 5 METHYLDEOXYCYTIDINE; CYTIDINE DERIVATIVE; UNCLASSIFIED DRUG;

EID: 84896126312     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0089376     Document Type: Article
Times cited : (38)

References (46)
  • 1
    • 80053144962 scopus 로고    scopus 로고
    • A decade of exploring the cancer epigenome - Biological and translational implications
    • Baylin SB, Jones PA (2011) A decade of exploring the cancer epigenome - biological and translational implications. Nat Rev Cancer 11: 726-734.
    • (2011) Nat Rev Cancer , vol.11 , pp. 726-734
    • Baylin, S.B.1    Jones, P.A.2
  • 3
    • 79951611375 scopus 로고    scopus 로고
    • Methylation profiling identifies 2 groups of gliomas according to their tumorigenesis
    • Laffaire J, Everhard S, Idbaih A, Criniere E, Marie Y, et al. (2011) Methylation profiling identifies 2 groups of gliomas according to their tumorigenesis. Neuro Oncol 13: 84-98.
    • (2011) Neuro Oncol , vol.13 , pp. 84-98
    • Laffaire, J.1    Everhard, S.2    Idbaih, A.3    Criniere, E.4    Marie, Y.5
  • 5
    • 77950813610 scopus 로고    scopus 로고
    • CpG island hypermethylation in human astrocytomas
    • Wu X, Rauch TA, Zhong X, Bennett WP, Latif F, et al. (2010) CpG island hypermethylation in human astrocytomas. Cancer Res 70: 2718-2727.
    • (2010) Cancer Res , vol.70 , pp. 2718-2727
    • Wu, X.1    Rauch, T.A.2    Zhong, X.3    Bennett, W.P.4    Latif, F.5
  • 6
    • 77952108366 scopus 로고    scopus 로고
    • Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma
    • Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K, et al. (2010) Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell 17: 510-522.
    • (2010) Cancer Cell , vol.17 , pp. 510-522
    • Noushmehr, H.1    Weisenberger, D.J.2    Diefes, K.3    Phillips, H.S.4    Pujara, K.5
  • 7
    • 79952036163 scopus 로고    scopus 로고
    • Distinct DNA methylation changes highly correlated with chronological age in the human brain
    • Hernandez DG, Nalls MA, Gibbs JR, Arepalli S, van der Brug M, et al. (2011) Distinct DNA methylation changes highly correlated with chronological age in the human brain. Hum Mol Genet 20: 1164-1172.
    • (2011) Hum Mol Genet , vol.20 , pp. 1164-1172
    • Hernandez, D.G.1    Nalls, M.A.2    Gibbs, J.R.3    Arepalli, S.4    Van Der Brug, M.5
  • 9
    • 77956216039 scopus 로고    scopus 로고
    • Genome-wide divergence of DNA methylation marks in cerebral and cerebellar cortices
    • Xin Y, Chanrion B, Liu MM, Galfalvy H, Costa R, et al. (2010) Genome-wide divergence of DNA methylation marks in cerebral and cerebellar cortices. PLoS One 5: e11357.
    • (2010) PLoS One , vol.5
    • Xin, Y.1    Chanrion, B.2    Liu, M.M.3    Galfalvy, H.4    Costa, R.5
  • 11
    • 84865285978 scopus 로고    scopus 로고
    • Landscape of somatic retrotransposition in human cancers
    • Lee E, Iskow R, Yang L, Gokcumen O, Haseley P, et al. (2012) Landscape of somatic retrotransposition in human cancers. Science 337: 967-971.
    • (2012) Science , vol.337 , pp. 967-971
    • Lee, E.1    Iskow, R.2    Yang, L.3    Gokcumen, O.4    Haseley, P.5
  • 12
    • 84875999688 scopus 로고    scopus 로고
    • Long Interspersed Element-1 (LINE-1): Passenger or Driver in Human Neoplasms?
    • Rodic N, Burns KH (2013) Long Interspersed Element-1 (LINE-1): Passenger or Driver in Human Neoplasms? PLoS Genet 9: e1003402.
    • (2013) PLoS Genet , vol.9
    • Rodic, N.1    Burns, K.H.2
  • 13
    • 83855165105 scopus 로고    scopus 로고
    • Repetitive DNA and next-generation sequencing: Computational challenges and solutions
    • Treangen TJ, Salzberg SL (2012) Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat Rev Genet 13: 36-46.
    • (2012) Nat Rev Genet , vol.13 , pp. 36-46
    • Treangen, T.J.1    Salzberg, S.L.2
  • 14
    • 79955397102 scopus 로고    scopus 로고
    • DNA methylation predicts recurrence from resected stage III proximal colon cancer
    • Ahn JB, Chung WB, Maeda O, Shin SJ, Kim HS, et al. (2011) DNA methylation predicts recurrence from resected stage III proximal colon cancer. Cancer 117: 1847-1854.
    • (2011) Cancer , vol.117 , pp. 1847-1854
    • Ahn, J.B.1    Chung, W.B.2    Maeda, O.3    Shin, S.J.4    Kim, H.S.5
  • 15
    • 79961151346 scopus 로고    scopus 로고
    • The global DNA methylation surrogate LINE-1 methylation is correlated with MGMT promoter methylation and is a better prognostic factor for glioma
    • Ohka F, Natsume A, Motomura K, Kishida Y, Kondo Y, et al. (2011) The global DNA methylation surrogate LINE-1 methylation is correlated with MGMT promoter methylation and is a better prognostic factor for glioma. PLoS One 6: e23332.
    • (2011) PLoS One , vol.6
    • Ohka, F.1    Natsume, A.2    Motomura, K.3    Kishida, Y.4    Kondo, Y.5
  • 16
    • 84867026300 scopus 로고    scopus 로고
    • Site- and grade-specific diversity of LINE1 methylation pattern in gastroenteropancreatic neuroendocrine tumours
    • Stricker I, Tzivras D, Nambiar S, Wulf J, Liffers ST, et al. (2012) Site- and grade-specific diversity of LINE1 methylation pattern in gastroenteropancreatic neuroendocrine tumours. Anticancer Res 32: 3699-3706.
    • (2012) Anticancer Res , vol.32 , pp. 3699-3706
    • Stricker, I.1    Tzivras, D.2    Nambiar, S.3    Wulf, J.4    Liffers, S.T.5
  • 17
    • 84861712337 scopus 로고    scopus 로고
    • Relationship between tumor DNA methylation status and patient characteristics in African-American and European-American women with breast cancer
    • Wang S, Dorsey TH, Terunuma A, Kittles RA, Ambs S, et al. (2012) Relationship between tumor DNA methylation status and patient characteristics in African-American and European-American women with breast cancer. PLoS One 7: e37928.
    • (2012) PLoS One , vol.7
    • Wang, S.1    Dorsey, T.H.2    Terunuma, A.3    Kittles, R.A.4    Ambs, S.5
  • 18
    • 84859620860 scopus 로고    scopus 로고
    • Global DNA hypomethylation in peripheral blood leukocytes as a biomarker for cancer risk: A meta-analysis
    • Woo HD, Kim J (2012) Global DNA hypomethylation in peripheral blood leukocytes as a biomarker for cancer risk: a meta-analysis. PLoS One 7: e34615.
    • (2012) PLoS One , vol.7
    • Woo, H.D.1    Kim, J.2
  • 19
    • 33749039999 scopus 로고    scopus 로고
    • Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation
    • DOI 10.1158/0008-5472.CAN-06-1547
    • Cadieux B, Ching TT, VandenBerg SR, Costello JF (2006) Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation. Cancer Res 66: 8469-8476. (Pubitemid 44449159)
    • (2006) Cancer Research , vol.66 , Issue.17 , pp. 8469-8476
    • Cadieux, B.1    Ching, T.-T.2    VandenBerg, S.R.3    Costello, J.F.4
  • 20
    • 84655162785 scopus 로고    scopus 로고
    • Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains
    • Berman BP, Weisenberger DJ, Aman JF, Hinoue T, Ramjan Z, et al. (2012) Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains. Nat Genet 44: 40-46.
    • (2012) Nat Genet , vol.44 , pp. 40-46
    • Berman, B.P.1    Weisenberger, D.J.2    Aman, J.F.3    Hinoue, T.4    Ramjan, Z.5
  • 21
    • 84255200412 scopus 로고    scopus 로고
    • 5-Hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations
    • Jin SG, Jiang Y, Qiu R, Rauch TA, Wang Y, et al. (2011) 5-Hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations. Cancer Res 71: 7360-7365.
    • (2011) Cancer Res , vol.71 , pp. 7360-7365
    • Jin, S.G.1    Jiang, Y.2    Qiu, R.3    Rauch, T.A.4    Wang, Y.5
  • 22
    • 77953223693 scopus 로고    scopus 로고
    • Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain
    • Gibbs JR, van der Brug MP, Hernandez DG, Traynor BJ, Nalls MA, et al. (2010) Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain. PLoS Genet 6: e1000952.
    • (2010) PLoS Genet , vol.6
    • Gibbs, J.R.1    Van Der Brug, M.P.2    Hernandez, D.G.3    Traynor, B.J.4    Nalls, M.A.5
  • 23
  • 24
    • 54549103517 scopus 로고    scopus 로고
    • DNA methylation determination by liquid chromatography-tandem mass spectrometry using novel biosynthetic [U-15N]deoxycytidine and [U-15N]methyldeoxycytidine internal standards
    • Quinlivan EP, Gregory JF 3rd (2008) DNA methylation determination by liquid chromatography-tandem mass spectrometry using novel biosynthetic [U-15N]deoxycytidine and [U-15N]methyldeoxycytidine internal standards. Nucleic Acids Res 36: e119.
    • (2008) Nucleic Acids Res , vol.36
    • Quinlivan, E.P.1    Gregory III, J.F.2
  • 25
    • 84864793380 scopus 로고    scopus 로고
    • Repetitive element DNA methylation levels in white blood cell DNA from sisters discordant for breast cancer from the New York site of the Breast Cancer Family Registry
    • Wu HC, Delgado-Cruzata L, Flom JD, Perrin M, Liao Y, et al. (2012) Repetitive element DNA methylation levels in white blood cell DNA from sisters discordant for breast cancer from the New York site of the Breast Cancer Family Registry. Carcinogenesis 33: 1946-1952.
    • (2012) Carcinogenesis , vol.33 , pp. 1946-1952
    • Wu, H.C.1    Delgado-Cruzata, L.2    Flom, J.D.3    Perrin, M.4    Liao, Y.5
  • 26
    • 84865168237 scopus 로고    scopus 로고
    • Global DNA methylation levels in white blood cells as a biomarker for hepatocellular carcinoma risk: A nested case-control study
    • Wu HC, Wang Q, Yang HI, Tsai WY, Chen CJ, et al. (2012) Global DNA methylation levels in white blood cells as a biomarker for hepatocellular carcinoma risk: a nested case-control study. Carcinogenesis 33: 1340-1345.
    • (2012) Carcinogenesis , vol.33 , pp. 1340-1345
    • Wu, H.C.1    Wang, Q.2    Yang, H.I.3    Tsai, W.Y.4    Chen, C.J.5
  • 27
    • 84868270843 scopus 로고    scopus 로고
    • Global hypomethylation in hepatocellular carcinoma and its relationship to aflatoxin B(1) exposure
    • Zhang YJ, Wu HC, Yazici H, Yu MW, Lee PH, et al. (2012) Global hypomethylation in hepatocellular carcinoma and its relationship to aflatoxin B(1) exposure. World J Hepatol 4: 169-175.
    • (2012) World J Hepatol , vol.4 , pp. 169-175
    • Zhang, Y.J.1    Wu, H.C.2    Yazici, H.3    Yu, M.W.4    Lee, P.H.5
  • 28
    • 84870249020 scopus 로고    scopus 로고
    • Pyrosequencing of IDH1 and IDH2 mutations in brain tumors and non-neoplastic conditions
    • Cykowski MD, Allen RA, Fung KM, Harmon MA, Dunn ST (2012) Pyrosequencing of IDH1 and IDH2 mutations in brain tumors and non-neoplastic conditions. Diagn Mol Pathol 21: 214-220.
    • (2012) Diagn Mol Pathol , vol.21 , pp. 214-220
    • Cykowski, M.D.1    Allen, R.A.2    Fung, K.M.3    Harmon, M.A.4    Dunn, S.T.5
  • 29
    • 84863413030 scopus 로고    scopus 로고
    • Prognostic value of three different methods of MGMT promoter methylation analysis in a prospective trial on newly diagnosed glioblastoma
    • Christians A, Hartmann C, Benner A, Meyer J, von Deimling A, et al. (2012) Prognostic value of three different methods of MGMT promoter methylation analysis in a prospective trial on newly diagnosed glioblastoma. PLoS One 7: e33449.
    • (2012) PLoS One , vol.7
    • Christians, A.1    Hartmann, C.2    Benner, A.3    Meyer, J.4    Von Deimling, A.5
  • 30
    • 84858860885 scopus 로고    scopus 로고
    • MGMT promoter methylation in gliomas-assessment by pyrosequencing and quantitative methylation-specific PCR
    • Havik AB, Brandal P, Honne H, Dahlback HS, Scheie D, et al. (2012) MGMT promoter methylation in gliomas-assessment by pyrosequencing and quantitative methylation-specific PCR. J Transl Med 10: 36.
    • (2012) J Transl Med , vol.10 , pp. 36
    • Havik, A.B.1    Brandal, P.2    Honne, H.3    Dahlback, H.S.4    Scheie, D.5
  • 31
    • 84861572881 scopus 로고    scopus 로고
    • Genome-wide DNA methylation profiles in hepatocellular carcinoma
    • Shen J, Wang S, Zhang YJ, Kappil M, Wu HC, et al. (2012) Genome-wide DNA methylation profiles in hepatocellular carcinoma. Hepatology 55: 1799-1808.
    • (2012) Hepatology , vol.55 , pp. 1799-1808
    • Shen, J.1    Wang, S.2    Zhang, Y.J.3    Kappil, M.4    Wu, H.C.5
  • 32
    • 84866542816 scopus 로고    scopus 로고
    • MGMT methylation analysis of glioblastoma on the Infinium methylation BeadChip identifies two distinct CpG regions associated with gene silencing and outcome, yielding a prediction model for comparisons across datasets, tumor grades, and CIMP-status
    • Bady P, Sciuscio D, Diserens AC, Bloch J, van den Bent MJ, et al. (2012) MGMT methylation analysis of glioblastoma on the Infinium methylation BeadChip identifies two distinct CpG regions associated with gene silencing and outcome, yielding a prediction model for comparisons across datasets, tumor grades, and CIMP-status. Acta Neuropathol 124: 547-560.
    • (2012) Acta Neuropathol , vol.124 , pp. 547-560
    • Bady, P.1    Sciuscio, D.2    Diserens, A.C.3    Bloch, J.4    Van Den Bent, M.J.5
  • 33
    • 79960927422 scopus 로고    scopus 로고
    • Increased methylation variation in epigenetic domains across cancer types
    • Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, et al. (2011) Increased methylation variation in epigenetic domains across cancer types. Nat Genet 43: 768-775.
    • (2011) Nat Genet , vol.43 , pp. 768-775
    • Hansen, K.D.1    Timp, W.2    Bravo, H.C.3    Sabunciyan, S.4    Langmead, B.5
  • 34
    • 84881398405 scopus 로고    scopus 로고
    • Pathway-based serum microRNA profiling and survival in patients with advanced stage non-small cell lung cancer
    • Wang Y, Gu J, Roth JA, Hildebrandt MA, Lippman SM, et al. (2013) Pathway-based serum microRNA profiling and survival in patients with advanced stage non-small cell lung cancer. Cancer Res 73: 4801-4809.
    • (2013) Cancer Res , vol.73 , pp. 4801-4809
    • Wang, Y.1    Gu, J.2    Roth, J.A.3    Hildebrandt, M.A.4    Lippman, S.M.5
  • 36
    • 84863752340 scopus 로고    scopus 로고
    • Dynamic changes in Ezh2 gene occupancy underlie its involvement in neural stem cell self-renewal and differentiation towards oligodendrocytes
    • Sher F, Boddeke E, Olah M, Copray S (2012) Dynamic changes in Ezh2 gene occupancy underlie its involvement in neural stem cell self-renewal and differentiation towards oligodendrocytes. PLoS One 7: e40399.
    • (2012) PLoS One , vol.7
    • Sher, F.1    Boddeke, E.2    Olah, M.3    Copray, S.4
  • 37
    • 84872395684 scopus 로고    scopus 로고
    • Regional activation of the cancer genome by long-range epigenetic remodeling
    • Bert SA, Robinson MD, Strbenac D, Statham AL, Song JZ, et al. (2013) Regional activation of the cancer genome by long-range epigenetic remodeling. Cancer Cell 23: 9-22.
    • (2013) Cancer Cell , vol.23 , pp. 9-22
    • Bert, S.A.1    Robinson, M.D.2    Strbenac, D.3    Statham, A.L.4    Song, J.Z.5
  • 39
    • 79959416877 scopus 로고    scopus 로고
    • Enhancer of Zeste 2 (EZH2) is up-regulated in malignant gliomas and in glioma stem-like cells
    • Orzan F, Pellegatta S, Poliani PL, Pisati F, Caldera V, et al. (2011) Enhancer of Zeste 2 (EZH2) is up-regulated in malignant gliomas and in glioma stem-like cells. Neuropathol Appl Neurobiol 37: 381-394.
    • (2011) Neuropathol Appl Neurobiol , vol.37 , pp. 381-394
    • Orzan, F.1    Pellegatta, S.2    Poliani, P.L.3    Pisati, F.4    Caldera, V.5
  • 40
    • 84860577189 scopus 로고    scopus 로고
    • A DNA hypermethylation module for the stem/progenitor cell signature of cancer
    • Easwaran H, Johnstone SE, Van Neste L, Ohm J, Mosbruger T, et al. (2012) A DNA hypermethylation module for the stem/progenitor cell signature of cancer. Genome Res 22: 837-849.
    • (2012) Genome Res , vol.22 , pp. 837-849
    • Easwaran, H.1    Johnstone, S.E.2    Van Neste, L.3    Ohm, J.4    Mosbruger, T.5
  • 41
    • 51649117107 scopus 로고    scopus 로고
    • Correlation of O6-methylguanine methyltransferase (MGMT) promoter methylation with clinical outcomes in glioblastoma and clinical strategies to modulate MGMT activity
    • Hegi ME, Liu L, Herman JG, Stupp R, Wick W, et al. (2008) Correlation of O6-methylguanine methyltransferase (MGMT) promoter methylation with clinical outcomes in glioblastoma and clinical strategies to modulate MGMT activity. J Clin Oncol 26: 4189-4199.
    • (2008) J Clin Oncol , vol.26 , pp. 4189-4199
    • Hegi, M.E.1    Liu, L.2    Herman, J.G.3    Stupp, R.4    Wick, W.5
  • 43
    • 83855163995 scopus 로고    scopus 로고
    • Uncovering the role of 5-hydroxymethylcytosine in the epigenome
    • Branco MR, Ficz G, Reik W (2012) Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat Rev Genet 13: 7-13.
    • (2012) Nat Rev Genet , vol.13 , pp. 7-13
    • Branco, M.R.1    Ficz, G.2    Reik, W.3
  • 44
    • 84867658061 scopus 로고    scopus 로고
    • SINE retrotransposons cause epigenetic reprogramming of adjacent gene promoters
    • Estecio MR, Gallegos J, Dekmezian M, Lu Y, Liang S, et al. (2012) SINE retrotransposons cause epigenetic reprogramming of adjacent gene promoters. Mol Cancer Res 10: 1332-1342.
    • (2012) Mol Cancer Res , vol.10 , pp. 1332-1342
    • Estecio, M.R.1    Gallegos, J.2    Dekmezian, M.3    Lu, Y.4    Liang, S.5
  • 45
    • 78649274945 scopus 로고    scopus 로고
    • Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer
    • Estecio MR, Gallegos J, Vallot C, Castoro RJ, Chung W, et al. (2010) Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer. Genome Res 20: 1369-1382.
    • (2010) Genome Res , vol.20 , pp. 1369-1382
    • Estecio, M.R.1    Gallegos, J.2    Vallot, C.3    Castoro, R.J.4    Chung, W.5
  • 46
    • 84867288158 scopus 로고    scopus 로고
    • Repetitive elements and enforced transcriptional repression co-operate to enhance DNA methylation spreading into a promoter CpG-island
    • Zhang Y, Shu J, Si J, Shen L, Estecio MR, et al. (2012) Repetitive elements and enforced transcriptional repression co-operate to enhance DNA methylation spreading into a promoter CpG-island. Nucleic Acids Res 40: 7257-7268.
    • (2012) Nucleic Acids Res , vol.40 , pp. 7257-7268
    • Zhang, Y.1    Shu, J.2    Si, J.3    Shen, L.4    Estecio, M.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.