메뉴 건너뛰기




Volumn 525, Issue , 2014, Pages 89-102

Irredundant tandem motifs

Author keywords

Irredundant; Motifs; Patterns; Redundant motifs; String algorithm; Suffix tree; Tandem

Indexed keywords

IRREDUNDANT; MOTIFS; PATTERNS; REDUNDANT MOTIFS; STRING ALGORITHMS; SUFFIX-TREES; TANDEM;

EID: 84895921912     PISSN: 03043975     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tcs.2013.08.012     Document Type: Article
Times cited : (17)

References (40)
  • 1
    • 1842503722 scopus 로고    scopus 로고
    • Incremental paradigms of motif discovery
    • A. Apostolico, and L. Parida Incremental paradigms of motif discovery J. Comput. Biol. 11 2004 15 25
    • (2004) J. Comput. Biol. , vol.11 , pp. 15-25
    • Apostolico, A.1    Parida, L.2
  • 6
    • 67650034254 scopus 로고    scopus 로고
    • Optimal extraction of motif patterns in 2D
    • S.E. Rombo Optimal extraction of motif patterns in 2D Inf. Process. Lett. 109 17 2009 1015 1020
    • (2009) Inf. Process. Lett. , vol.109 , Issue.17 , pp. 1015-1020
    • Rombo, S.E.1
  • 9
    • 34248398378 scopus 로고    scopus 로고
    • Discovering topological motifs using a compact notation
    • L. Parida Discovering topological motifs using a compact notation J. Comput. Biol. 14 2007 300 323
    • (2007) J. Comput. Biol. , vol.14 , pp. 300-323
    • Parida, L.1
  • 10
    • 84895917819 scopus 로고    scopus 로고
    • Pattern Discovery in Bioinformatics: Theory and Algorithms
    • Chapman and Hall/CRC
    • L. Parida Pattern Discovery in Bioinformatics: Theory and Algorithms Math. Comput. Biol. 2007 Chapman and Hall/CRC
    • (2007) Math. Comput. Biol.
    • Parida, L.1
  • 13
    • 33745012569 scopus 로고    scopus 로고
    • Mutation patterns of amino acid tandem repeats in the human proteome
    • L. Mularoni, R. Guigó, and M.M. Albà Mutation patterns of amino acid tandem repeats in the human proteome Genome Biol. 7 2006 R33
    • (2006) Genome Biol. , vol.7 , pp. 33
    • Mularoni, L.1    Guigó, R.2    Albà, M.M.3
  • 14
    • 38549135468 scopus 로고    scopus 로고
    • Yeastract-discoverer: New tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
    • P.T. Monteiro, N.D. Mendes, and M.C. Teixeira et al. Yeastract- discoverer: New tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae Nucleic Acids Res. 36 2008 132 136
    • (2008) Nucleic Acids Res. , vol.36 , pp. 132-136
    • Monteiro, P.T.1    Mendes, N.D.2    Teixeira, M.C.3
  • 19
    • 0033677426 scopus 로고    scopus 로고
    • Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification
    • L. Marsan, and M.-F. Sagot Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification J. Comput. Biol. 7 2000 345 362
    • (2000) J. Comput. Biol. , vol.7 , pp. 345-362
    • Marsan, L.1    Sagot, M.-F.2
  • 22
    • 64149088998 scopus 로고    scopus 로고
    • Discovering subword associations in strings in time linear in the output size
    • A. Apostolico, and G. Satta Discovering subword associations in strings in time linear in the output size J. Discrete Algorithms 7 2009 227 238
    • (2009) J. Discrete Algorithms , vol.7 , pp. 227-238
    • Apostolico, A.1    Satta, G.2
  • 23
    • 79953086981 scopus 로고    scopus 로고
    • Efficient algorithms for the discovery of gapped factors
    • A. Apostolico, C. Pizzi, and E. Ukkonen Efficient algorithms for the discovery of gapped factors Algorithms Mol. Biol. 6 5 2011
    • (2011) Algorithms Mol. Biol. , vol.6 , Issue.5
    • Apostolico, A.1    Pizzi, C.2    Ukkonen, E.3
  • 26
    • 26444506658 scopus 로고    scopus 로고
    • A comparative study of bases for motif inference
    • C. Iliopoulos, T. Lecroq, KCL Publications
    • N. Pisanti, M. Crochemore, R. Grossi, and M.-F. Sagot A comparative study of bases for motif inference C. Iliopoulos, T. Lecroq, String Algorithmics 2004 KCL Publications 195 226
    • (2004) String Algorithmics , pp. 195-226
    • Pisanti, N.1    Crochemore, M.2    Grossi, R.3    Sagot, M.-F.4
  • 27
    • 69849083725 scopus 로고    scopus 로고
    • Suffix tree characterization of maximal motifs in biological sequences
    • M. Federico, and N. Pisanti Suffix tree characterization of maximal motifs in biological sequences Theor. Comput. Sci. 410 2009 4391 4401
    • (2009) Theor. Comput. Sci. , vol.410 , pp. 4391-4401
    • Federico, M.1    Pisanti, N.2
  • 28
    • 84867333432 scopus 로고    scopus 로고
    • Extracting string motif bases for quorum higher than two
    • S.E. Rombo Extracting string motif bases for quorum higher than two Theor. Comput. Sci. 460 2012 94 103
    • (2012) Theor. Comput. Sci. , vol.460 , pp. 94-103
    • Rombo, S.E.1
  • 29
    • 0002139526 scopus 로고
    • The myriad virtues of subword trees
    • A. Apostolico, Z. Galil, NATO Adv. Stud. Inst. Ser. Springer-Verlag
    • A. Apostolico The myriad virtues of subword trees A. Apostolico, Z. Galil, Combinatorial Algorithms on Words NATO Adv. Stud. Inst. Ser. vol. 12 1985 Springer-Verlag 85 96
    • (1985) Combinatorial Algorithms on Words , vol.12 , pp. 85-96
    • Apostolico, A.1
  • 31
    • 0001553729 scopus 로고    scopus 로고
    • From Ukkonen to McCreight and Weiner: A unifying view of linear-time suffix tree construction
    • R. Giegerich, and S. Kurtz From Ukkonen to McCreight and Weiner: A unifying view of linear-time suffix tree construction Algorithmica 19 1997 331 353
    • (1997) Algorithmica , vol.19 , pp. 331-353
    • Giegerich, R.1    Kurtz, S.2
  • 32
    • 0038148917 scopus 로고    scopus 로고
    • Truncated suffix trees and their application to data compression
    • J.C. Na, A. Apostolico, C.S. Iliopoulos, and K. Park Truncated suffix trees and their application to data compression Theor. Comput. Sci. 304 2003 87 101
    • (2003) Theor. Comput. Sci. , vol.304 , pp. 87-101
    • Na, J.C.1    Apostolico, A.2    Iliopoulos, C.S.3    Park, K.4
  • 34
    • 17744370935 scopus 로고    scopus 로고
    • An inexact-suffix-tree-based algorithm for detecting extensible patterns
    • A. Chattaraj, and L. Parida An inexact-suffix-tree-based algorithm for detecting extensible patterns Theor. Comput. Sci. 335 2005 3 14
    • (2005) Theor. Comput. Sci. , vol.335 , pp. 3-14
    • Chattaraj, A.1    Parida, L.2
  • 38
    • 84875590756 scopus 로고    scopus 로고
    • Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
    • F. Zambelli, G. Pesole, and G. Pavesi Motif discovery and transcription factor binding sites before and after the next-generation sequencing era Brief. Bioinform. 14 2 2013 225 237
    • (2013) Brief. Bioinform. , vol.14 , Issue.2 , pp. 225-237
    • Zambelli, F.1    Pesole, G.2    Pavesi, G.3
  • 40
    • 9444244530 scopus 로고    scopus 로고
    • Discovering representative models in large time series databases
    • (FQAS 2004)
    • S.E. Rombo, and G. Terracina Discovering representative models in large time series databases Proc. of Flexible Query Answering Systems (FQAS 2004) 2004 84 97
    • (2004) Proc. of Flexible Query Answering Systems , pp. 84-97
    • Rombo, S.E.1    Terracina, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.