-
2
-
-
84871077318
-
Efficient extraction of structured motifs using box-links
-
SPIRE
-
A.M. Carvalho, A.T. Freitas, A.L. Oliveira, M.-F. Sagot, Efficient extraction of structured motifs using box-links, in: Proceedings of the 11th Symposium on String Processing and Information Retrieval, SPIRE, vol. 3246, 2004, pp. 267-268
-
(2004)
Proceedings of the 11th Symposium on String Processing and Information Retrieval
, vol.3246
, pp. 267-268
-
-
Carvalho, A.M.1
Freitas, A.T.2
Oliveira, A.L.3
Sagot, M.-F.4
-
4
-
-
33646730147
-
An efficient algorithm for the identification of structured motifs in dna promoter sequences
-
Carvalho A.M., Freitas A.T., Oliveira A.L., and Sagot M.-F. An efficient algorithm for the identification of structured motifs in dna promoter sequences. IEEE/ACM Transaction on Computational Biology and Bioinformatics 3 2 (2006) 126-140
-
(2006)
IEEE/ACM Transaction on Computational Biology and Bioinformatics
, vol.3
, Issue.2
, pp. 126-140
-
-
Carvalho, A.M.1
Freitas, A.T.2
Oliveira, A.L.3
Sagot, M.-F.4
-
5
-
-
21144439147
-
Assessing computational tools for the discovery of transcription factor binding sites
-
Tompa M., et al. Assessing computational tools for the discovery of transcription factor binding sites. Nature Biotechnology 23 1 (2005) 137-144
-
(2005)
Nature Biotechnology
, vol.23
, Issue.1
, pp. 137-144
-
-
Tompa, M.1
-
6
-
-
0004137004
-
-
Cambridge University Press, New York, NY, USA
-
Gusfield D. Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology (1997), Cambridge University Press, New York, NY, USA
-
(1997)
Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology
-
-
Gusfield, D.1
-
9
-
-
0034565346
-
Computation and visualization of degenerate repeats in complete genomes
-
S. Kurtz, E. Ohlebusch, C. Schleiermacher, J. Stoye, R. Giegerich, Computation and visualization of degenerate repeats in complete genomes, in: Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology, ISMB, 2000, pp. 228-238
-
(2000)
Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology, ISMB
, pp. 228-238
-
-
Kurtz, S.1
Ohlebusch, E.2
Schleiermacher, C.3
Stoye, J.4
Giegerich, R.5
-
10
-
-
0033721648
-
Extracting structured motifs using a suffix tree, Algorithms and application to promoter consensus identification
-
L. Marsan, M.-F. Sagot, Extracting structured motifs using a suffix tree, Algorithms and application to promoter consensus identification, in: Annual Conference on REsearch in COmputational Molecular Biology, RECOMB, 2000
-
(2000)
Annual Conference on REsearch in COmputational Molecular Biology, RECOMB
-
-
Marsan, L.1
Sagot, M.-F.2
-
11
-
-
0033677426
-
Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory consensus identification
-
Marsan L., and Sagot M.-F. Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory consensus identification. Journal of Computational Biology 7 (2001) 345-360
-
(2001)
Journal of Computational Biology
, vol.7
, pp. 345-360
-
-
Marsan, L.1
Sagot, M.-F.2
-
12
-
-
0016942292
-
A space-economical suffix tree construction algorithm
-
McCreight E.M. A space-economical suffix tree construction algorithm. Journal of the ACM 23( 2 (1976) 262-272
-
(1976)
Journal of the ACM
, vol.23
, Issue.2
, pp. 262-272
-
-
McCreight, E.M.1
-
13
-
-
0033886876
-
Pattern discovery on character sets and real-valued data: Linear bound on irredundant motifs and efficient polynomial time algorithm
-
SODA
-
L. Parida, I. Rigoutsos, A. Floratos, D. Platt, Y. Gao, Pattern discovery on character sets and real-valued data: Linear bound on irredundant motifs and efficient polynomial time algorithm, in: Proceedings of the 11th Annual ACM-SIAM Symposium on Discrete Algorithms, SODA, 2000
-
(2000)
Proceedings of the 11th Annual ACM-SIAM Symposium on Discrete Algorithms
-
-
Parida, L.1
Rigoutsos, I.2
Floratos, A.3
Platt, D.4
Gao, Y.5
-
14
-
-
3242884167
-
Weeder web: Discovery of transcription factor binding sites in a set of sequences from co-regulated genes
-
Pavesi G., Mereghetti P., Mauri G., and Pesole G. Weeder web: Discovery of transcription factor binding sites in a set of sequences from co-regulated genes. Nucleic Acids Research 32 Web-Server-Issue (2004) 199-203
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.Web-Server-Issue
, pp. 199-203
-
-
Pavesi, G.1
Mereghetti, P.2
Mauri, G.3
Pesole, G.4
-
15
-
-
33745594596
-
Risotto: Fast extraction of motifs with mismatches
-
N. Pisanti, A.M. Carvalho, L. Marsan, M.-F. Sagot, Risotto: Fast extraction of motifs with mismatches, in: Proceedings of the 7th Latin American Symposium on Theoretical Informatics, LATIN, 2006, pp. 757-768
-
(2006)
Proceedings of the 7th Latin American Symposium on Theoretical Informatics, LATIN
, pp. 757-768
-
-
Pisanti, N.1
Carvalho, A.M.2
Marsan, L.3
Sagot, M.-F.4
-
17
-
-
0029270682
-
Searching for flexible repeated patterns using a non-transitive similarity relation
-
Soldano H., Viari A., and Champesme M. Searching for flexible repeated patterns using a non-transitive similarity relation. Pattern Recognition Letters 16 (1995) 243-246
-
(1995)
Pattern Recognition Letters
, vol.16
, pp. 243-246
-
-
Soldano, H.1
Viari, A.2
Champesme, M.3
-
18
-
-
0001704377
-
On-line construction of suffix trees
-
Ukkonen E. On-line construction of suffix trees. Algorithmica 14 3 (1995) 249-260
-
(1995)
Algorithmica
, vol.14
, Issue.3
, pp. 249-260
-
-
Ukkonen, E.1
-
20
-
-
0034708338
-
Inferring regulatory elements from a whole genome. An application to the analysis of the genome of helicobacter pylori sigma 80 family of promoter signals
-
Vanet A., Marsan L., Labigne A., and Sagot M.-F. Inferring regulatory elements from a whole genome. An application to the analysis of the genome of helicobacter pylori sigma 80 family of promoter signals. Journal of Molecular Biology 297 (2000) 335-353
-
(2000)
Journal of Molecular Biology
, vol.297
, pp. 335-353
-
-
Vanet, A.1
Marsan, L.2
Labigne, A.3
Sagot, M.-F.4
-
21
-
-
0033379116
-
Promoter sequences and algorithmical methods for identifying them
-
Vanet A., Marsan L., and Sagot M.-F. Promoter sequences and algorithmical methods for identifying them. Research in Microbiology 150 1 (1999) 1-21
-
(1999)
Research in Microbiology
, vol.150
, Issue.1
, pp. 1-21
-
-
Vanet, A.1
Marsan, L.2
Sagot, M.-F.3
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