메뉴 건너뛰기




Volumn 6685 LNBI, Issue , 2011, Pages 59-71

IP6K gene discovery in plant mtDNA

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS THALIANA; CATALYTIC SITES; GENE DISCOVERY; INOSITOL PHOSPHATE; INOSITOL POLYPHOSPHATES; MAMMALIAN ENZYMES; MOTIF DISCOVERY; NUCLEOTIDE SEQUENCES; PLANT CHROMOSOMES; TRANS-SPLICING;

EID: 80051702666     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-21946-7_5     Document Type: Conference Paper
Times cited : (1)

References (40)
  • 4
    • 0034695549 scopus 로고    scopus 로고
    • The second messenger binding site of inositol 1,4,5-trisphosphate 3- kinase is centered in the catalytic domain and related to the inositol trisphosphate receptor site
    • DOI 10.1074/jbc.275.3.1557
    • Bertsch, U., Deschermeier, C., Fanick, W., Girkontaite, I., Hillemeier, K., Johnen, H., Weglhner, W., Emmrich, F., Mayr, G.W.: The second messenger binding site of inositol 1,4,5-trisphosphate 3-kinase is centered in the catalytic domain and related to the inositol trisphosphate receptor site. J. Biol. Chem. 275, 1557-1564 (2000) (Pubitemid 30060768)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.3 , pp. 1557-1564
    • Bertsch, U.1    Deschermeier, C.2    Fanick, W.3    Girkontaite, I.4    Hillemeier, K.5    Johnen, H.6    Weglohner, W.7    Emmrich, F.8    Mayr, G.W.9
  • 7
    • 0029814788 scopus 로고    scopus 로고
    • 6 in vitro by wheat-bran phytase
    • Brearley, C.A., Hanke, D.E.: Inositol phosphates in barley (hordeum vul. l.) aleurone tissue are stereochemically similar to the products of breakdown of insp6 in vitro by wheat-bran phytase. Bioch. J. 318(1), 279-286 (1996) (Pubitemid 26283656)
    • (1996) Biochemical Journal , vol.318 , Issue.1 , pp. 279-286
    • Brearley, C.A.1    Hanke, D.E.2
  • 8
    • 0027232398 scopus 로고
    • 2+ by rat brain inositol 1,4,5-trisphosphate 3-kinase
    • Communi, D., Takazawa, K., Erneux, C.: Lys-197 and asp-414 are critical residues for binding of atp/mg2+ by rat brain inositol 1,4,5-trisphosphate 3-kinase. Biochem J. 291, 811-816 (1993) (Pubitemid 23148457)
    • (1993) Biochemical Journal , vol.291 , Issue.3 , pp. 811-816
    • Communi, D.1    Takazawa, K.2    Erneux, C.3
  • 9
    • 0034711248 scopus 로고    scopus 로고
    • Biochemical and functional characterization of inositol 1,3,4,5,6-pentakisphosphate 2-kinases
    • DOI 10.1074/jbc.M007586200
    • Ives, E.B., Nichols, J., Wente, S.R., York, J.D.: Biochemical and functional characterization of inositol 1,3,4,5,6-pentakiphosphate 2-kinases. The Journal of Biological Chemistry 275, 36575-36583 (2000) (Pubitemid 32002056)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.47 , pp. 36575-36583
    • Ives, E.B.1    Nichols, J.2    Wente, S.R.3    York, J.D.4
  • 10
    • 0344376570 scopus 로고    scopus 로고
    • Finding composite regulatory patterns in DNA sequences
    • Eskin, E., Pevzner, P.A.: Finding composite regulatory patterns in DNA sequences. Bioinformatics 18, S354-S363 (2002)
    • (2002) Bioinformatics , vol.18
    • Eskin, E.1    Pevzner, P.A.2
  • 11
    • 52949134517 scopus 로고    scopus 로고
    • Mining loosely structured motifs from biological data
    • Fassetti, F., Greco, G., Terracina, G.: Mining loosely structured motifs from biological data. IEEE Trans. Knowl. Data Eng. 20(11), 1472-1489 (2008)
    • (2008) IEEE Trans. Knowl. Data Eng. , vol.20 , Issue.11 , pp. 1472-1489
    • Fassetti, F.1    Greco, G.2    Terracina, G.3
  • 12
    • 0033694225 scopus 로고    scopus 로고
    • Abscisic acid-induced changes in inositol metabolism in spirodela polyrrhiza
    • Flores, S., Smart, C.C.: Abscisic acid-induced changes in inositol metabolism in spirodela polyrrhiza. Planta. 211, 823-832 (2000)
    • (2000) Planta. , vol.211 , pp. 823-832
    • Flores, S.1    Smart, C.C.2
  • 13
    • 0018263844 scopus 로고
    • Why genes in pieces?
    • Gilbert, P.: Why genes in pieces? Nature 271(5645), 501 (1978)
    • (1978) Nature , vol.271 , Issue.5645 , pp. 501
    • Gilbert, P.1
  • 14
    • 77953097386 scopus 로고    scopus 로고
    • Inositol 1,3,4,5,6-pentakisphosphate 2-kinase is a distant ipk member with a singular inosite binding site for axial 2-oh recognition
    • Gonzales, B., Banos-Sanz, J.I., Villate, M., Brearley, C.A., Sanz-Aparicio, J.: Inositol 1,3,4,5,6-pentakisphosphate 2-kinase is a distant ipk member with a singular inosite binding site for axial 2-oh recognition. Proc. Natl. Acad. Sci. U S A 107(21), 9608-9613 (2010)
    • (2010) Proc. Natl. Acad. Sci. U S A , vol.107 , Issue.21 , pp. 9608-9613
    • Gonzales, B.1    Banos-Sanz, J.I.2    Villate, M.3    Brearley, C.A.4    Sanz-Aparicio, J.5
  • 15
    • 0033516604 scopus 로고    scopus 로고
    • A phospholipase C-dependent inositol polyphosphate kinase pathway required for efficient messenger RNA export
    • DOI 10.1126/science.285.5424.96
    • York, J.D., Odom, A.R., Murphy, R., Ives, E.B., Wente, S.R.: A phospholipase cdependent inositol polyphosphate kinase pathway required for efficient messenger rna export. Science 285, 96-100 (1999) (Pubitemid 29307573)
    • (1999) Science , vol.285 , Issue.5424 , pp. 96-100
    • York, J.D.1    Odom, A.R.2    Murphy, R.3    Ives, E.B.4    Wente, S.R.5
  • 16
    • 0037199965 scopus 로고    scopus 로고
    • The synthesis of inositol hexakisphosphate: Characterization of human inositol 1,3,4,5,6-pentakisphosphate 2-kinase
    • DOI 10.1074/jbc.M205682200
    • Verbsky, J.W., Wilson, M.P., Kisseleva, M.V., Majerus, P.W., Wenter, S.R.: The synthesis of inositol hexakiphosphate. characterization of human inositol 1,3,4,5,6-pentakiphosphate 2-kinase. The Journal of Biological Chemistry 277, 31857-31862 (2002) (Pubitemid 34968993)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.35 , pp. 31857-31862
    • Verbsky, J.W.1    Wilson, M.P.2    Kisseleva, M.V.3    Majerus, P.W.4    Wente, S.R.5
  • 17
    • 36448991500 scopus 로고    scopus 로고
    • ClustalW and ClustalX version 2
    • Larkin, M.A., Blackshields, G., Brown, N.P.: ClustalW and ClustalX version 2. Bioinf. 23(21), 2947-2948 (2007)
    • (2007) Bioinf. , vol.23 , Issue.21 , pp. 2947-2948
    • Larkin, M.A.1    Blackshields, G.2    Brown, N.P.3
  • 18
    • 58149280202 scopus 로고    scopus 로고
    • Do mammals make all their own inositol hexakisphosphate?
    • Letcher, A.J., Schell, M.J., Irvine, R.F.: Do mammals make all their own inositol hexakisphosphate? Biochem. J. 416(2), 263-270 (2008)
    • (2008) Biochem. J. , vol.416 , Issue.2 , pp. 263-270
    • Letcher, A.J.1    Schell, M.J.2    Irvine, R.F.3
  • 19
    • 0029583179 scopus 로고
    • Consensus phylogeny of Dictyostelium
    • DOI 10.1007/BF01944728
    • Loomis, W.F., Smith, D.W.: Consensus phylogeny of Dictyostelium. Experientia. 51(12), 1110-1115 (1995) (Pubitemid 26007853)
    • (1995) Experientia , vol.51 , Issue.12 , pp. 1110-1115
    • Loomis, W.F.1    Smith, D.W.2
  • 20
    • 0141540848 scopus 로고    scopus 로고
    • Inositol pyrophosphates mediate chemotaxis in Dictyostelium via pleckstrin homology domain-Ptdins(3,4,5)P3 interactions
    • DOI 10.1016/S0092-8674(03)00640-8
    • Luo, H.R., Huang, Y.E., Chen, J.C., Saiardi, A., Iijima, M., Ye, K., Huang, Y., Nagata, E., Devreotes, P., Snyder, S.H.: Inositol pyrophosphates mediate chemotaxis in Dictyostelium via pleckstrin homology domain-PtdIns(3,4,5) P3 interactions. Cell 114(5), 559-572 (2003) (Pubitemid 37159253)
    • (2003) Cell , vol.114 , Issue.5 , pp. 559-572
    • Luo, H.R.1    Huang, Y.E.2    Chen, J.C.3    Saiardi, A.4    Iijima, M.5    Ye, K.6    Huang, Y.7    Nagata, E.8    Devreotes, P.9    Snyder, S.H.10
  • 21
    • 0033677426 scopus 로고    scopus 로고
    • Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification
    • Marsan, L., Sagot, M.-F.: Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification. J. of Comput. Biol. 7, 345-360 (2000)
    • (2000) J. of Comput. Biol. , vol.7 , pp. 345-360
    • Marsan, L.1    Sagot, M.-F.2
  • 23
    • 12544255427 scopus 로고    scopus 로고
    • Inositol hexakisphosphate kinase-2, a physiologic mediator of cell death
    • Nagata, E., Luo, H.R., Saiardi, A., Bae, B., Suzuki, N., Snyder, S.H.: Inositol hexakisphosphate kinase-2, a physiologic mediator of cell death. J. Biol. Chem. 280(2), 1634-1640 (2005)
    • (2005) J. Biol. Chem. , vol.280 , Issue.2 , pp. 1634-1640
    • Nagata, E.1    Luo, H.R.2    Saiardi, A.3    Bae, B.4    Suzuki, N.5    Snyder, S.H.6
  • 24
    • 0019962151 scopus 로고
    • The evolution of a complex eukaryotic gene
    • OMalley, B.W., Stein, J.P., Means, A.R.: The evolution of a complex eukaryotic gene. Metabolism 31(7), 646-653 (1982)
    • (1982) Metabolism , vol.31 , Issue.7 , pp. 646-653
    • Omalley, B.W.1    Stein, J.P.2    Means, A.R.3
  • 26
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The european molecular biology open software suite
    • Rice, P., Longden, I., Bleasby, A.: EMBOSS: the European Molecular Biology Open Software Suite. Trends in Genetics 16(6), 276-277 (2000)
    • (2000) Trends in Genetics , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 27
    • 80051686483 scopus 로고    scopus 로고
    • Pattern discovery in biosequences: From simple to complex patterns
    • Masseglia, F., Poncelet, P., Teisseire, M. (eds.) . IGI Global
    • Rombo, S.E., Palopoli, L.: Pattern discovery in biosequences: From simple to complex patterns. In: Masseglia, F., Poncelet, P., Teisseire, M. (eds.) Data Mining Patterns: New Methods and Applications. IGI Global (2007)
    • (2007) Data Mining Patterns: New Methods and Applications
    • Rombo, S.E.1    Palopoli, L.2
  • 28
    • 0033581832 scopus 로고    scopus 로고
    • Synthesis of diphosphoinositol pentakisphosphate by a newly identified family of higher inositol polyphosphate kinases
    • Saiardi, A., Erdjument-Bromage, H., Snowman, A.M., Tempst, P., Snyder, S.H.: Synthesis of diphosphoinositol pentakisphosphate by a newly identified family of higher inositol polyphosphate kinases. Curr. Biol. 9(22), 1323-1326 (1999)
    • (1999) Curr. Biol. , vol.9 , Issue.22 , pp. 1323-1326
    • Saiardi, A.1    Erdjument-Bromage, H.2    Snowman, A.M.3    Tempst, P.4    Snyder, S.H.5
  • 32
    • 0942290439 scopus 로고    scopus 로고
    • How versatile are inositol phosphate kinases?
    • DOI 10.1042/BJ20031428
    • Shears, S.B.: How versatile are inositol phosphate kinases? Biochem. J. 377, 265-280 (2004) (Pubitemid 38142182)
    • (2004) Biochemical Journal , vol.377 , Issue.2 , pp. 265-280
    • Shears, S.B.1
  • 33
    • 0018969406 scopus 로고
    • Ovomucoid intervening sequences specify functional domains and generate protein polymorphism
    • Stein, J.P., Catterall, J.F., Kisto, P., Means, A.R., O'Malley, B.W.: Ovomucoid intervening sequences specify functional domains and generate protein polymorphism. Cell 21, 681-687 (1980) (Pubitemid 10022876)
    • (1980) Cell , vol.21 , Issue.3 , pp. 681-687
    • Stein, J.P.1    Catterall, J.F.2    Kristo, P.3
  • 34
    • 0037044795 scopus 로고    scopus 로고
    • Molecular and biochemical characterization of two plant inositol polyphosphate 6-/3-/5-kinases
    • DOI 10.1074/jbc.M209112200
    • Stevenson-Paulik, J., Odom, A., York, J.: Molecular and biochemical characterization of two plant inositol polyposphate 6-/3-5- kinases. J. Biol. Chem. 277, 42711-42718 (2002) (Pubitemid 35285642)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.45 , pp. 42711-42718
    • Stevenson-Paulik, J.1    Odom, A.R.2    York, J.D.3
  • 35
    • 32944463612 scopus 로고    scopus 로고
    • Characterization of an Arabidopsis inositol 1,3,4,5,6-pentakisphosphate 2-kinase(AtIPK1)
    • DOI 10.1042/BJ20051331
    • Sweetman, D., Johnson, S., Caddick, S.E., Hanke, D.E., Brearley, C.A.: Characteryzation of an arabidopsis inositol 1,3,4,5,6-pentakisphosphate 2-kinase (atipk1). Biochem. J. 394, 95-103 (2006) (Pubitemid 43259659)
    • (2006) Biochemical Journal , vol.394 , Issue.1 , pp. 95-103
    • Sweetman, D.1    Johnson, S.2    Caddick, S.E.K.3    Hanke, D.E.4    Brearley, C.A.5
  • 36
    • 37249023728 scopus 로고    scopus 로고
    • The process of RNA editing in plant mitochondria
    • DOI 10.1016/j.mito.2007.09.004, PII S1567724907002437, Unique Aspects of Plant Motichondria
    • Takenaka, M., Verbitskiya, D., van der Merwea, J.A., Zehrmanna, A., Brennickea, A.: The process of rna editing in plant mitochondria. Mitochondrion 8, 35-46 (2008) (Pubitemid 350263734)
    • (2008) Mitochondrion , vol.8 , Issue.1 , pp. 35-46
    • Takenaka, M.1    Verbitskiy, D.2    Van Der Merwe, J.A.3    Zehrmann, A.4    Brennicke, A.5
  • 37
    • 0030930307 scopus 로고    scopus 로고
    • Structural identification of the myo-inositol 1,4,5-trisphosphate-binding domain in rat brain inositol 1,4,5-trisphosphate 3-kinase
    • Togashi, S., Takazawa, K., Endo, T., Erneux, C., Onaya, T.: Structural identification of the myo-inositol 1,4,5-trisphosphate-binding domain in rat brain inositol 1,4,5-trisphosphate 3-kinase. Biochem. J. 326, 221-225 (1997) (Pubitemid 27386939)
    • (1997) Biochemical Journal , vol.326 , Issue.1 , pp. 221-225
    • Togashi, S.1    Takazawa, K.2    Endo, T.3    Erneux, C.4    Onaya, T.5
  • 40
    • 0242684549 scopus 로고    scopus 로고
    • Arabidopsis inositol polyphosphate 6-/3-kinase is a nuclear protein that complements a yeast mutant lacking a functional ArgR-Mcm1 transcription complex
    • DOI 10.1105/tpc.006676
    • Xia, H.J., Brearley, C., Elge, S., Kaplan, B., Fromm, H., Mueller-Roeber, B.: Arabidopsis inositol polyphosphate 6-/3-kinase is a nuclear protein that complements a yeast mutant lacking a functional argr-mcm1 transcription complex. Plant Cell 15, 449-463 (2003) (Pubitemid 36229997)
    • (2003) Plant Cell , vol.15 , Issue.2 , pp. 449-463
    • Xia, H.-J.1    Brearley, C.2    Elge, S.3    Kaplan, B.4    Fromm, H.5    Mueller-Roeber, B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.