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Volumn 9, Issue 2, 2014, Pages

Identification of serum microRNA biomarkers for tuberculosis using RNA-seq

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; MICRORNA; MICRORNA 196B; MICRORNA 376C; UNCLASSIFIED DRUG; MIRN196 MICRORNA, HUMAN; MIRN376 MICRORNA, HUMAN; PRIMER DNA;

EID: 84895875539     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0088909     Document Type: Article
Times cited : (74)

References (39)
  • 1
    • 17644388063 scopus 로고    scopus 로고
    • Annulling a dangerous liaison: Vaccination strategies against AIDS and tuberculosis
    • DOI 10.1038/nm1221
    • Kaufmann SH, McMichael AJ (2005) Annulling a dangerous liaison: vaccination strategies against AIDS and tuberculosis. Nat Med 11: S33-44. (Pubitemid 40562302)
    • (2005) Nature Medicine , vol.11 , Issue.4 SUPPL.
    • Kaufmann, S.H.E.1    McMichael, A.J.2
  • 2
    • 80053386381 scopus 로고    scopus 로고
    • Advances in the diagnosis of tuberculosis infection
    • Arias Guillen M (2011) Advances in the diagnosis of tuberculosis infection. Arch Bronconeumol 47: 521-530.
    • (2011) Arch Bronconeumol , vol.47 , pp. 521-530
    • Arias Guillen, M.1
  • 3
    • 75149133148 scopus 로고    scopus 로고
    • The quest for biomarkers in tuberculosis
    • Parida SK, Kaufmann SH (2010) The quest for biomarkers in tuberculosis. Drug Discov Today 15: 148-157.
    • (2010) Drug Discov Today , vol.15 , pp. 148-157
    • Parida, S.K.1    Kaufmann, S.H.2
  • 4
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V (2004) The functions of animal microRNAs. Nature 431: 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 5
    • 67650252543 scopus 로고    scopus 로고
    • MicroRNA expression profiling outperforms mRNA expression profiling in formalin-fixed paraffin-embedded tissues
    • Liu A, Tetzlaff MT, Vanbelle P, Elder D, Feldman M, et al. (2009) MicroRNA expression profiling outperforms mRNA expression profiling in formalin-fixed paraffin-embedded tissues. Int J Clin Exp Pathol 2: 519-527.
    • (2009) Int J Clin Exp Pathol , vol.2 , pp. 519-527
    • Liu, A.1    Tetzlaff, M.T.2    Vanbelle, P.3    Elder, D.4    Feldman, M.5
  • 6
    • 79953227709 scopus 로고    scopus 로고
    • Candidate Mycobacterium tuberculosis genes targeted by human microRNAs
    • Guo W, Li JT, Pan X, Wei L, Wu JY (2010) Candidate Mycobacterium tuberculosis genes targeted by human microRNAs. Protein Cell 1: 419-421.
    • (2010) Protein Cell , vol.1 , pp. 419-421
    • Guo, W.1    Li, J.T.2    Pan, X.3    Wei, L.4    Wu, J.Y.5
  • 7
    • 84871872764 scopus 로고    scopus 로고
    • Circulating microRNAs as specific biomarkers for breast cancer detection
    • Ng EK, Li R, Shin VY, Jin HC, Leung CP, et al. (2013) Circulating microRNAs as specific biomarkers for breast cancer detection. PLoS One 8: e53141.
    • (2013) PLoS One , vol.8
    • Ng, E.K.1    Li, R.2    Shin, V.Y.3    Jin, H.C.4    Leung, C.P.5
  • 10
    • 82455186873 scopus 로고    scopus 로고
    • Circulating microRNAs in patients with active pulmonary tuberculosis
    • Fu Y, Yi Z, Wu X, Li J, Xu F (2011) Circulating microRNAs in patients with active pulmonary tuberculosis. J Clin Microbiol 49: 4246-4251.
    • (2011) J Clin Microbiol , vol.49 , pp. 4246-4251
    • Fu, Y.1    Yi, Z.2    Wu, X.3    Li, J.4    Xu, F.5
  • 11
    • 79958257508 scopus 로고    scopus 로고
    • Genetic study of two single nucleotide polymorphisms within corresponding microRNAs and susceptibility to tuberculosis in a Chinese Tibetan and Han population
    • Li D, Wang T, Song X, Qucuo M, Yang B, et al. (2011) Genetic study of two single nucleotide polymorphisms within corresponding microRNAs and susceptibility to tuberculosis in a Chinese Tibetan and Han population. Hum Immunol 72: 598-602.
    • (2011) Hum Immunol , vol.72 , pp. 598-602
    • Li, D.1    Wang, T.2    Song, X.3    Qucuo, M.4    Yang, B.5
  • 12
    • 80052033649 scopus 로고    scopus 로고
    • The microRNA miR-29 controls innate and adaptive immune responses to intracellular bacterial infection by targeting interferon-gamma
    • Ma F, Xu S, Liu X, Zhang Q, Xu X, et al. (2011) The microRNA miR-29 controls innate and adaptive immune responses to intracellular bacterial infection by targeting interferon-gamma. Nat Immunol 12: 861-869.
    • (2011) Nat Immunol , vol.12 , pp. 861-869
    • Ma, F.1    Xu, S.2    Liu, X.3    Zhang, Q.4    Xu, X.5
  • 13
    • 80053931516 scopus 로고    scopus 로고
    • Comparative miRNA expression profiles in individuals with latent and active tuberculosis
    • Wang C, Yang S, Sun G, Tang X, Lu S, et al. (2011) Comparative miRNA expression profiles in individuals with latent and active tuberculosis. PLoS One 6: e25832.
    • (2011) PLoS One , vol.6
    • Wang, C.1    Yang, S.2    Sun, G.3    Tang, X.4    Lu, S.5
  • 14
    • 77649205818 scopus 로고    scopus 로고
    • Analysis of circulating microRNA biomarkers in plasma and serum using quantitative reverse transcription-PCR (qRT-PCR)
    • Kroh EM, Parkin RK, Mitchell PS, Tewari M (2010) Analysis of circulating microRNA biomarkers in plasma and serum using quantitative reverse transcription-PCR (qRT-PCR). Methods 50: 298-301.
    • (2010) Methods , vol.50 , pp. 298-301
    • Kroh, E.M.1    Parkin, R.K.2    Mitchell, P.S.3    Tewari, M.4
  • 15
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7: 986-995. (Pubitemid 27487763)
    • (1997) Genome Research , vol.7 , Issue.10 , pp. 986-995
    • Audic, S.1    Claverie, J.-M.2
  • 16
    • 84861216036 scopus 로고    scopus 로고
    • Regulation of Mycobacterium tuberculosis-dependent HIV-1 transcription reveals a new role for NFAT5 in the toll-like receptor pathway
    • Ranjbar S, Jasenosky LD, Chow N, Goldfeld AE (2012) Regulation of Mycobacterium tuberculosis-dependent HIV-1 transcription reveals a new role for NFAT5 in the toll-like receptor pathway. PLoS Pathog 8: e1002620.
    • (2012) PLoS Pathog , vol.8
    • Ranjbar, S.1    Jasenosky, L.D.2    Chow, N.3    Goldfeld, A.E.4
  • 17
    • 67249084276 scopus 로고    scopus 로고
    • Use of tissue-specific microRNA to control pathology of wild-type adenovirus without attenuation of its ability to kill cancer cells
    • Cawood R, Chen HH, Carroll F, Bazan-Peregrino M, van Rooijen N, et al. (2009) Use of tissue-specific microRNA to control pathology of wild-type adenovirus without attenuation of its ability to kill cancer cells. PLoS Pathog 5: e1000440.
    • (2009) PLoS Pathog , vol.5
    • Cawood, R.1    Chen, H.H.2    Carroll, F.3    Bazan-Peregrino, M.4    Van Rooijen, N.5
  • 18
    • 0141631876 scopus 로고    scopus 로고
    • A microRNA array reveals extensive regulation of microRNAs during brain development
    • DOI 10.1261/rna.5980303
    • Krichevsky AM, King KS, Donahue CP, Khrapko K, Kosik KS (2003) A microRNA array reveals extensive regulation of microRNAs during brain development. RNA 9: 1274-1281. (Pubitemid 37151681)
    • (2003) RNA , vol.9 , Issue.10 , pp. 1274-1281
    • Krichevsky, A.M.1    King, K.S.2    Donahue, C.P.3    Khrapko, K.4    Kosik, K.S.5
  • 19
    • 16344383409 scopus 로고    scopus 로고
    • Development of a micro-array to detect human and mouse microRNAs and characterization of expression in human organs
    • Sun Y, Koo S, White N, Peralta E, Esau C, et al. (2004) Development of a micro-array to detect human and mouse microRNAs and characterization of expression in human organs. Nucleic Acids Res 32: e188.
    • (2004) Nucleic Acids Res , vol.32
    • Sun, Y.1    Koo, S.2    White, N.3    Peralta, E.4    Esau, C.5
  • 21
    • 7044285911 scopus 로고    scopus 로고
    • Probing microRNAs with microarrays: Tissue specificity and functional inference
    • DOI 10.1261/rna.7119904
    • Babak T, Zhang W, Morris Q, Blencowe BJ, Hughes TR (2004) Probing microRNAs with microarrays: tissue specificity and functional inference. RNA 10: 1813-1819. (Pubitemid 39426380)
    • (2004) RNA , vol.10 , Issue.11 , pp. 1813-1819
    • Babak, T.1    Zhang, W.2    Morris, Q.3    Blencowe, B.J.4    Hughes, T.R.5
  • 24
    • 84355162842 scopus 로고    scopus 로고
    • Analysis of microRNA expression profiling identifies miR-155 and miR-155* as potential diagnostic markers for active tuberculosis: A preliminary study
    • Wu J, Lu C, Diao N, Zhang S, Wang S, et al. (2012) Analysis of microRNA expression profiling identifies miR-155 and miR-155* as potential diagnostic markers for active tuberculosis: a preliminary study. Hum Immunol 73: 31-37.
    • (2012) Hum Immunol , vol.73 , pp. 31-37
    • Wu, J.1    Lu, C.2    Diao, N.3    Zhang, S.4    Wang, S.5
  • 25
    • 2342642197 scopus 로고    scopus 로고
    • A high-throughput method to monitor the expression of microRNA precursors
    • Schmittgen TD, Jiang J, Liu Q, Yang L (2004) A high-throughput method to monitor the expression of microRNA precursors. Nucleic Acids Res 32: e43.
    • (2004) Nucleic Acids Res , vol.32
    • Schmittgen, T.D.1    Jiang, J.2    Liu, Q.3    Yang, L.4
  • 28
    • 50849093580 scopus 로고    scopus 로고
    • Tuberculosis in Africa: Learning from pathogenesis for biomarker identification
    • Kaufmann SH, Parida SK (2008) Tuberculosis in Africa: learning from pathogenesis for biomarker identification. Cell Host Microbe 4: 219-228.
    • (2008) Cell Host Microbe , vol.4 , pp. 219-228
    • Kaufmann, S.H.1    Parida, S.K.2
  • 29
    • 80455173422 scopus 로고    scopus 로고
    • A 5-microRNA signature for lung squamous cell carcinoma diagnosis and hsa-miR-31 for prognosis
    • Tan X, Qin W, Zhang L, Hang J, Li B, et al. (2011) A 5-microRNA signature for lung squamous cell carcinoma diagnosis and hsa-miR-31 for prognosis. Clin Cancer Res 17: 6802-6811.
    • (2011) Clin Cancer Res , vol.17 , pp. 6802-6811
    • Tan, X.1    Qin, W.2    Zhang, L.3    Hang, J.4    Li, B.5
  • 30
    • 84863457036 scopus 로고    scopus 로고
    • MicroRNA expression changes after lung cancer resection: A follow-up study
    • Leidinger P, Keller A, Backes C, Huwer H, Meese E (2012) MicroRNA expression changes after lung cancer resection: a follow-up study. RNA Biol 9: 900-910.
    • (2012) RNA Biol , vol.9 , pp. 900-910
    • Leidinger, P.1    Keller, A.2    Backes, C.3    Huwer, H.4    Meese, E.5
  • 31
    • 79955519937 scopus 로고    scopus 로고
    • Genomic loss of miR- 486 regulates tumor progression and the OLFM4 antiapoptotic factor in gastric cancer
    • Oh HK, Tan AL, Das K, Ooi CH, Deng NT, et al. (2011) Genomic loss of miR- 486 regulates tumor progression and the OLFM4 antiapoptotic factor in gastric cancer. Clin Cancer Res 17: 2657-2667.
    • (2011) Clin Cancer Res , vol.17 , pp. 2657-2667
    • Oh, H.K.1    Tan, A.L.2    Das, K.3    Ooi, C.H.4    Deng, N.T.5
  • 32
    • 77953702930 scopus 로고    scopus 로고
    • Identification of miRNAs that are associated with tumor metastasis in neuroblastoma
    • Guo J, Dong Q, Fang Z, Chen X, Lu H, et al. (2010) Identification of miRNAs that are associated with tumor metastasis in neuroblastoma. Cancer Biol Ther 9: 446-452.
    • (2010) Cancer Biol Ther , vol.9 , pp. 446-452
    • Guo, J.1    Dong, Q.2    Fang, Z.3    Chen, X.4    Lu, H.5
  • 33
    • 2142654329 scopus 로고    scopus 로고
    • MicroRNA-Directed Cleavage of HOXB8 mRNA
    • DOI 10.1126/science.1097434
    • Yekta S, Shih IH, Bartel DP (2004) MicroRNA-directed cleavage of HOXB8 mRNA. Science 304: 594-596. (Pubitemid 38541919)
    • (2004) Science , vol.304 , Issue.5670 , pp. 594-596
    • Yekta, S.1    Shih, I.-H.2    Bartel, D.P.3
  • 34
    • 84874319924 scopus 로고    scopus 로고
    • miR-196b targets c-myc and Bcl-2 expression, inhibits proliferation and induces apoptosis in endometriotic stromal cells
    • Abe W, Nasu K, Nakada C, Kawano Y, Moriyama M, et al. (2013) miR-196b targets c-myc and Bcl-2 expression, inhibits proliferation and induces apoptosis in endometriotic stromal cells. Hum Reprod 28: 750-761.
    • (2013) Hum Reprod , vol.28 , pp. 750-761
    • Abe, W.1    Nasu, K.2    Nakada, C.3    Kawano, Y.4    Moriyama, M.5
  • 35
    • 77951953494 scopus 로고    scopus 로고
    • Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
    • Witten D, Tibshirani R, Gu SG, Fire A, Lui WO (2010) Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls. BMC Biol 8: 58.
    • (2010) BMC Biol , vol.8 , pp. 58
    • Witten, D.1    Tibshirani, R.2    Gu, S.G.3    Fire, A.4    Lui, W.O.5
  • 36
    • 80355131288 scopus 로고    scopus 로고
    • MicroRNA expression profiling in patients with lamin A/C-associated muscular dystrophy
    • Sylvius N, Bonne G, Straatman K, Reddy T, Gant TW, et al. (2011) MicroRNA expression profiling in patients with lamin A/C-associated muscular dystrophy. FASEB J 25: 3966-3978.
    • (2011) FASEB J , vol.25 , pp. 3966-3978
    • Sylvius, N.1    Bonne, G.2    Straatman, K.3    Reddy, T.4    Gant, T.W.5
  • 37
    • 33745295937 scopus 로고    scopus 로고
    • Elevated activity of transcription factor nuclear factor of activated T-cells 5 (NFAT5) and diabetic nephropathy
    • DOI 10.2337/db05-1260
    • Yang B, Hodgkinson AD, Oates PJ, Kwon HM, Millward BA, et al. (2006) Elevated activity of transcription factor nuclear factor of activated T-cells 5 (NFAT5) and diabetic nephropathy. Diabetes 55: 1450-1455. (Pubitemid 44195386)
    • (2006) Diabetes , vol.55 , Issue.5 , pp. 1450-1455
    • Yang, B.1    Hodgkinson, A.D.2    Oates, P.J.3    Hyug, M.K.4    Millward, B.A.5    Demaine, A.G.6
  • 38
    • 44649189409 scopus 로고    scopus 로고
    • NFAT5 induction and its role in hyperosmolar stressed human limbal epithelial cells
    • Lee JH, Kim M, Im YS, Choi W, Byeon SH, et al. (2008) NFAT5 induction and its role in hyperosmolar stressed human limbal epithelial cells. Invest Ophthalmol Vis Sci 49: 1827-1835.
    • (2008) Invest Ophthalmol Vis Sci , vol.49 , pp. 1827-1835
    • Lee, J.H.1    Kim, M.2    Im, Y.S.3    Choi, W.4    Byeon, S.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.