메뉴 건너뛰기




Volumn 2, Issue 6, 2009, Pages 519-527

MicroRNA expression profiling outperforms mRNA expression profiling in formalin-fixed paraffin-embedded tissues

Author keywords

Formalin fixed paraffin embedded (FFPE); Melanoma; Microarray; miRNA

Indexed keywords


EID: 67650252543     PISSN: None     EISSN: 19362625     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (124)

References (29)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004;116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 33750370444 scopus 로고    scopus 로고
    • MicroRNA signatures in human cancers
    • Calin GA and Croce CM. MicroRNA signatures in human cancers. Nat Rev Cancer 2006;6: 857-866.
    • (2006) Nat Rev Cancer , vol.6 , pp. 857-866
    • Calin, G.A.1    Croce, C.M.2
  • 3
    • 38349131954 scopus 로고    scopus 로고
    • MicroRNAs: Biogenesis and molecular functions
    • Liu X, Fortin K and Mourelatos Z. MicroRNAs: biogenesis and molecular functions. Brain Pathol 2008;18:113-121.
    • (2008) Brain Pathol , vol.18 , pp. 113-121
    • Liu, X.1    Fortin, K.2    Mourelatos, Z.3
  • 8
    • 0035955374 scopus 로고    scopus 로고
    • Identification of novel genes coding for small expressed RNAs
    • Lagos-Quintana M, Rauhut R, Lendeckel W and Tuschl T. Identification of novel genes coding for small expressed RNAs. Science 2001;294: 853-858.
    • (2001) Science , vol.294 , pp. 853-858
    • Lagos-Quintana, M.1    Rauhut, R.2    Lendeckel, W.3    Tuschl, T.4
  • 13
    • 42449151984 scopus 로고    scopus 로고
    • Evaluation and validation of total RNA extraction methods for microRNA expression analyses in formalin-fixed, paraffin-embedded tissues
    • Doleshal M, Magotra AA, Choudhury B, Cannon BD, Labourier E and Szafranska AE. Evaluation and validation of total RNA extraction methods for microRNA expression analyses in formalin-fixed, paraffin-embedded tissues. J Mol Diagn 2008;10:203-211.
    • (2008) J Mol Diagn , vol.10 , pp. 203-211
    • Doleshal, M.1    Magotra, A.A.2    Choudhury, B.3    Cannon, B.D.4    Labourier, E.5    Szafranska, A.E.6
  • 14
    • 34447506198 scopus 로고    scopus 로고
    • Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snap frozen cells
    • Li J, Smyth P, Flavin R, Cahill S, Denning K, Aherne S, Guenther SM, O'Leary JJ and Sheils O. Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snap frozen cells. BMC Biotechnol 2007;7:36.
    • (2007) BMC Biotechnol , vol.7 , pp. 36
    • Li, J.1    Smyth, P.2    Flavin, R.3    Cahill, S.4    Denning, K.5    Aherne, S.6    Guenther, S.M.7    O'Leary, J.J.8    Sheils, O.9
  • 16
    • 34748837455 scopus 로고    scopus 로고
    • Systematic analysis of microRNA expression of RNA extracted from fresh frozen and formalin-fixed paraffin-embedded samples
    • Xi Y, Nakajima G, Gavin E, Morris CG, Kudo K, Hayashi K and Ju J. Systematic analysis of microRNA expression of RNA extracted from fresh frozen and formalin-fixed paraffin-embedded samples. RNA 2007;13:1668-1674.
    • (2007) RNA , vol.13 , pp. 1668-1674
    • Xi, Y.1    Nakajima, G.2    Gavin, E.3    Morris, C.G.4    Kudo, K.5    Hayashi, K.6    Ju, J.7
  • 19
    • 39549094091 scopus 로고    scopus 로고
    • Differential expression of miRNAs in papillary thyroid carcinoma compared to multinodular goiter using formalin fixed paraffin embedded tissues
    • Tetzlaff MT, Liu A, Xu X, Master SR, Baldwin DA, Tobias JW, Livolsi VA and Baloch ZW. Differential expression of miRNAs in papillary thyroid carcinoma compared to multinodular goiter using formalin fixed paraffin embedded tissues. Endocr Pathol 2007;18:163-173.
    • (2007) Endocr Pathol , vol.18 , pp. 163-173
    • Tetzlaff, M.T.1    Liu, A.2    Xu, X.3    Master, S.R.4    Baldwin, D.A.5    Tobias, J.W.6    Livolsi, V.A.7    Baloch, Z.W.8
  • 20
    • 55949095602 scopus 로고    scopus 로고
    • An array-based analysis of microRNA expression comparing matched frozen and formalin-fixed paraffin-embedded human tissue samples
    • Zhang X, Chen J, Radcliffe T, Lebrun DP, Tron VA and Feilotter H. An array-based analysis of microRNA expression comparing matched frozen and formalin-fixed paraffin-embedded human tissue samples. J Mol Diagn 2008;10: 513-519.
    • (2008) J Mol Diagn , vol.10 , pp. 513-519
    • Zhang, X.1    Chen, J.2    Radcliffe, T.3    Lebrun, D.P.4    Tron, V.A.5    Feilotter, H.6
  • 22
    • 67650218831 scopus 로고    scopus 로고
    • MicroRNA Expression in Melanocytic Nevi: The Usefulness of Formalin-Fixed, Paraffin-Embedded Material for miRNA Microarray Profiling
    • Epub ahead of print
    • Glud M, Klausen M, Gniadecki R, Rossing M, Hastrup N, Nielsen FC and Drzewiecki KT. MicroRNA Expression in Melanocytic Nevi: The Usefulness of Formalin-Fixed, Paraffin-Embedded Material for miRNA Microarray Profiling. J Invest Dermatol 2008 [Epub ahead of print]
    • (2008) J Invest Dermatol
    • Glud, M.1    Klausen, M.2    Gniadecki, R.3    Rossing, M.4    Hastrup, N.5    Nielsen, F.C.6    Drzewiecki, K.T.7
  • 23
    • 0033571272 scopus 로고    scopus 로고
    • Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples
    • Masuda N, Ohnishi T, Kawamoto S, Monden M and Okubo K. Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples. Nucleic Acids Res 1999;27: 4436-4443.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4436-4443
    • Masuda, N.1    Ohnishi, T.2    Kawamoto, S.3    Monden, M.4    Okubo, K.5
  • 24
    • 0036898005 scopus 로고    scopus 로고
    • Effect of fixatives and tissue processing on the content and integrity of nucleic acids
    • Srinivasan M, Sedmak D and Jewell S. Effect of fixatives and tissue processing on the content and integrity of nucleic acids. Am J Pathol 2002;161:1961-1971.
    • (2002) Am J Pathol , vol.161 , pp. 1961-1971
    • Srinivasan, M.1    Sedmak, D.2    Jewell, S.3
  • 25
    • 0037322205 scopus 로고    scopus 로고
    • Towards quantitative mRNA analysis in paraffin-embedded tissues using real-time reverse transcriptase-polymerase chain reaction: A methodological study on lymph nodes from melanoma patients
    • Abrahamsen HN, Steiniche T, Nexo E, Hamilton-Dutoit SJ and Sorensen BS. Towards quantitative mRNA analysis in paraffin-embedded tissues using real-time reverse transcriptase-polymerase chain reaction: a methodological study on lymph nodes from melanoma patients. J Mol Diagn 2003;5:34-41.
    • (2003) J Mol Diagn , vol.5 , pp. 34-41
    • Abrahamsen, H.N.1    Steiniche, T.2    Nexo, E.3    Hamilton-Dutoit, S.J.4    Sorensen, B.S.5
  • 26
    • 1542469713 scopus 로고    scopus 로고
    • Measurement of gene expression in archival paraffin-embedded tissues: Development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay
    • Cronin M, Pho M, Dutta D, Stephans JC, Shak S, Kiefer MC, Esteban JM and Baker JB. Measurement of gene expression in archival paraffin-embedded tissues: development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay. Am J Pathol 2004;164:35-42.
    • (2004) Am J Pathol , vol.164 , pp. 35-42
    • Cronin, M.1    Pho, M.2    Dutta, D.3    Stephans, J.C.4    Shak, S.5    Kiefer, M.C.6    Esteban, J.M.7    Baker, J.B.8
  • 28
    • 56149110341 scopus 로고    scopus 로고
    • Integrin beta 3 expression is regulated by let-7a miRNA in malignant melanoma
    • Muller DW and Bosserhoff AK. Integrin beta 3 expression is regulated by let-7a miRNA in malignant melanoma. Oncogene 2008;27: 6698-6706.
    • (2008) Oncogene , vol.27 , pp. 6698-6706
    • Muller, D.W.1    Bosserhoff, A.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.