A microRNA array reveals extensive regulation of microRNAs during brain development

RNA

Volumn 9, Issue 10, 2003, Pages 1274-1281

  Krichevsky, Anna M ^a   King, Kevin S ^a   Donahue, Christine P ^a   Khrapko, Konstantin ^a   Kosik, Kenneth S ^a,b  

^a HARVARD MEDICAL SCHOOL   (United States)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

Development; MicroRNA; MRNA targets; Oligonucleotide array

Indexed keywords

DNA; MICRORNA; RNA; UNCLASSIFIED DRUG;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BRAIN DEVELOPMENT; DNA MICROARRAY; EMBRYO; GENE EXPRESSION; MOUSE; NERVE CELL; NERVOUS SYSTEM DEVELOPMENT; NEWBORN; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RAT;

NON-PROGRAMMATIC;

ANIMALS; BLOTTING, NORTHERN; BRAIN; DNA PRIMERS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MEMBRANE PROTEINS; MICE; MICE, KNOCKOUT; MICRORNAS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PRESENILIN-1; RATS;

ANIMALIA; MAMMALIA;

EID: 0141631876     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.5980303     Document Type: Article

References (34)

1. Ambros, V. 2000. Control of developmental timing in Caenorhabditis elegans. Curr. Opin. Genet. Dev. 10: 428-433.
2. Ambros, V., Lee, R.C., Lavanway, A., Williams, P.T., and Jewell, D. 2003. MicroRNAs and other tiny endogenous RNAs in C. elegans. Curr. Biol. 13: 807-818.
3. Baulcombe, D. 2002. DNA events. An RNA microcosm. Science 297:2002-2003.
4. Brennecke, J., Hipfner, D.R., Stark, A., Russell, R.B., and Cohen, S.M. 2003. Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113: 25-36.
5. Caudy, A.A., Myers, M., Hannon, G.J., and Hammond, S.M. 2002. Fragile X-related protein and VIG associate with the RNA interference machinery. Genes & Dev. 16: 2491-2496.
6. Cox, G.A., Mahaffey, C.L., and Frankel, W.N. 1998. Identification of the mouse neuromuscular degeneration gene and mapping of a second site suppressor allele. Neuron 21: 1327-1337.
7. Dostie, J., Mourelatos, Z., Yang, M., Sharma, A., and Dreyfuss, G. 2003. Numerous microRNPs in neuronal cells containing novel microRNAs. RNA 9: 180-186.
8. Gleichmann, M., Buchheim, G., El-Bizri, H., Yokota, Y., Klockgether, T., Kugler, S., Bahr, M., Weller, M., and Schulz, J.B. 2002. Identification of inhibitor-of-differentiation 2 (Id2) as a modulator of neuronal apoptosis. J. Neurochem. 80: 755-762.
9. Grishok, A., Pasquinelli, A.E., Conte, D., Li, N., Parrish, S., Ha, I., Baillie, D.L., Fire, A., Ruvkun, G., and Mello, C.C. 2001. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell 106: 23-34.
10. Handler, M., Yang, X., and Shen, J. 2000. Presenilin-1 regulates neuronal differentiation during neurogenesis. Development 127: 2593-2606.
11. Hutvagner, G., McLachlan, J., Pasquinelli, A.E., Balint, E., Tuschl, T., and Zamore, P.D. 2001. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293: 834-838.
12. Kasschau, K.D., Xie, Z., Allen, E., Llave, C., Chapman, E.J., Krizan, K.A., and Carrington, J.C. 2003. P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function. Dev. Cell 4: 205-217.
13. Ketting, R.F., Fischer, S.E., Bernstein, E., Sijen, T., Hannon, G.J., and Plasterk, R.H. 2001. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes & Dev. 15: 2654-2659.
14. Krichevsky, A.M., and Kosik, K.S. 2001. Neuronal RNA granules: A link between RNA localization and stimulation-dependent translation. Neuron 32: 683-696.
15. Lagos-Quintana, M., Rauhut, R., Lendeckel, W., and Tuschl, T. 2001. Identification of novel genes coding for small expressed RNAs. Science 294: 853-858.
16. Lagos-Quintana, M., Rauhut, R., Yalcin, A., Meyer, J., Lendeckel, W., and Tuschl, T. 2002. Identification of tissue-specific MicroRNAs from mouse. Curr. Biol. 12: 735-739.
17. Lau, N.C., Lim, L.P., Weinstein, E.G., and Bartel, D.P. 2001. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294: 858-862.
18. Lee, R.C. and Ambros, V. 2001. An extensive class of small RNAs in Caenorhabditis elegans. Science 294: 862-864.
19. Lee, R.C., Feinbaum, R.L., and Ambros, V. 1993. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854.
20. Lim, L.P., Glasner, M.E., Yekta, S., Burge, C.B., and Bartel, D.P. 2003. Vertebrate microRNA genes. Science 299: 1540.
21. Llave, C., Xie, Z., Kasschau, K.D., and Carrington, J.C. 2002. Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056.
22. Miller, S., Yasuda, M., Coats, J.K., Jones, Y., Martone, M.E., and Mayford, M. 2002. Disruption of dendritic translation of CaMKIIα impairs stabilization of synaptic plasticity and memory consolidation. Neuron 36: 507-519.
23. Mourelatos, Z., Dostie, J., Paushkin, S., Sharma, A., Charroux, B., Abel, L., Rappsilber, J., Mann, M., and Dreyfuss, G. 2002. miRNPs: A novel class of ribonucleoproteins containing numerous micro RNAs. Genes & Dev. 16: 720-728.
24. O'Donnell, W.T. and Warren, S.T. 2002. A decade of molecular studies of fragile X syndrome. Annu. Rev. Neurosci. 25: 315-338.
25. Okabe, M., Imai, T., Kurusu, M., Hiromi, Y., and Okano, H. 2001. Translational repression determines a neuronal potential in Drosophila asymmetric cell division. Nature 411: 94-98.
26. Olsen, P.H. and Ambros, V. 1999. The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation. Dev. Biol. 216: 671-680.
27. Polli, J.W., Billingsley, M.L., and Kincaid, R.L. 1991. Expression of the calmodulin-dependent phosphodiesterase, calcineurin, in rat brain: Developmental patterns and the role of nigrostriatal innervation. Dev. Brain Res. 61: 105-119.
28. Reinhart, B.J., Slack, F.J., Basson, M., Pasquinelli, A.E., Bettinger, J.C., Rougvie, A.E., Horvitz, H.R., and Ruvkun, G. 2000. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403: 901-906.
29. Rhoades, M., Reinhart, B., Lim, L., Burge, C., Bartel, B., and Bartel, D. 2002. Prediction of plant microRNA targets. Cell 110: 513.
30. Shen, J., Bronson, T., Chjen, D.F., Xia, W., Selkoe, D.J., and Tonegawa, S. 1997. Skeletal and CNS defects in presenilin-1-deficient mice. Cell 89: 629-639.
31. Simeone, A., Puelles, E., and Acampora, D. 2002. The Otx family. Curr. Opin. Genet. Dev. 12: 409-415.
32. Slack, F.J., Basson, M., Liu, Z., Ambros, V., Horvitz, H.R., and Ruvkun, G. 2000. The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor. Mol. Cell 5: 659-669.
33. Wightman, B., Ha, I., and Ruvkun, G. 1993. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 75: 855-862.
34. Zhuo, M., Zhang, W., Son, H., Mansuy, I., Sobel, R.A., Seidman, J., and Kandel, E.R. 1999. A selective role of calcineurin aα in synaptic depotentiation in hippocampus. Proc. Natl. Acad. Sci. 96: 4650-4655.