-
1
-
-
79952638264
-
Cellular decision making and biological noise: From microbes to mammals
-
Balázsi G, van Oudenaarden A, Collins JJ (2011) Cellular decision making and biological noise: From microbes to mammals. Cell 144: 910-925.
-
(2011)
Cell
, vol.144
, pp. 910-925
-
-
Balázsi, G.1
Van Oudenaarden, A.2
Collins, J.J.3
-
3
-
-
0003674159
-
-
2nd edition. Blackwell Science, Malden, Massachusetts and Cell Press, Cambridge, Massachusetts
-
Ptashne M (1992) A genetic switch: Phage Lambda and higher organisms, 2nd edition. Blackwell Science, Malden, Massachusetts and Cell Press, Cambridge, Massachusetts.
-
(1992)
A Genetic Switch: Phage Lambda and Higher Organisms
-
-
Ptashne, M.1
-
4
-
-
1442354192
-
Multistability in the lactose utilization network of Escherichia coli
-
DOI 10.1038/nature02298
-
Ozbudak EM, Thattai M, Lim HN, Shraiman BI, van Oudenaarden A (2004) Multistability in the lactose utilization network of Escherichia coli. Nature 427: 737-740. (Pubitemid 38294592)
-
(2004)
Nature
, vol.427
, Issue.6976
, pp. 737-740
-
-
Ozbudak, E.M.1
Thattal, M.2
Lim, H.H.3
Shraiman, B.I.4
Van Oudenaarden, A.5
-
5
-
-
25444489027
-
Ecology: Phenotypic diversity, population growth, and information in fluctuating environments
-
DOI 10.1126/science.1114383
-
Kussell E, Leibler S (2005) Phenotypic diversity, population growth, and information in fluctuating environments. Science 309: 2075-2078. (Pubitemid 41362330)
-
(2005)
Science
, vol.309
, Issue.5743
, pp. 2075-2078
-
-
Kussell, E.1
Leibler, S.2
-
8
-
-
28844496741
-
Self-regulating gene: An exact solution
-
Hornos JEM, Schultz D, Innocentini GC, Wang J, Walczak AM, et al. (2005) Self-regulating gene: An exact solution. Phys Rev E 72: 051907.
-
(2005)
Phys Rev E
, vol.72
, pp. 051907
-
-
Hornos, J.E.M.1
Schultz, D.2
Innocentini, G.C.3
Wang, J.4
Walczak, A.M.5
-
9
-
-
50449104011
-
Potential landscapes and flux framework of nonequilibrium networks: Robustness, dissipation, and coherence of biochemical oscillations
-
Wang J, Xu L, Wang E (2008) Potential landscapes and flux framework of nonequilibrium networks: robustness, dissipation, and coherence of biochemical oscillations. Proc Natl Acad Sci USA 105: 12271-12276.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 12271-12276
-
-
Wang, J.1
Xu, L.2
Wang, E.3
-
10
-
-
49449097807
-
A numerical scheme for optimal transition paths of stochastic chemical kinetic systems
-
Liu D (2008) A numerical scheme for optimal transition paths of stochastic chemical kinetic systems. J Comp Phys 227: 8672-8684.
-
(2008)
J Comp Phys
, vol.227
, pp. 8672-8684
-
-
Liu, D.1
-
11
-
-
77957734642
-
Kinetic paths, time scale, and underlying landscapes: A path integral framework to study global natures of nonequilibrium systems and networks
-
Wang J, Zhang K, Wang E (2010) Kinetic paths, time scale, and underlying landscapes: A path integral framework to study global natures of nonequilibrium systems and networks. J Chem Phys 133: 1-13.
-
(2010)
J Chem Phys
, vol.133
, pp. 1-13
-
-
Wang, J.1
Zhang, K.2
Wang, E.3
-
13
-
-
84865327667
-
Analytical mechanics in stochastic dynamics: Most probable path, large-deviation rate function and Hamilton-Jacobi equation
-
Ge H, Qian H (2012) Analytical mechanics in stochastic dynamics: most probable path, large-deviation rate function and Hamilton-Jacobi equation. Int J Mod Phys B 26: 1230012.
-
(2012)
Int J Mod Phys B
, vol.26
, pp. 1230012
-
-
Ge, H.1
Qian, H.2
-
14
-
-
57949097644
-
Noise-driven unlimited population growth
-
Meerson B, Sasorov PV (2008) Noise-driven unlimited population growth. Phys Rev E 78: 060103.
-
(2008)
Phys Rev e
, vol.78
, pp. 060103
-
-
Meerson, B.1
Sasorov, P.V.2
-
15
-
-
79960640740
-
Determining the stability of genetic switches: Explicitly accounting for mRNA noise
-
Assaf M, Roberts E, Luthey-Schulten Z (2011) Determining the stability of genetic switches: Explicitly accounting for mRNA noise. Phys Rev Lett 106: 248102.
-
(2011)
Phys Rev Lett
, vol.106
, pp. 248102
-
-
Assaf, M.1
Roberts, E.2
Luthey-Schulten, Z.3
-
16
-
-
77955102352
-
Quantifying E. Coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi Y, Choi PJ, Li GW, Chen HY, Babu M, et al. (2010) Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329: 533-538.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.Y.4
Babu, M.5
-
18
-
-
47649111578
-
Exponential sensitivity of noise-driven switching in genetic networks
-
Mehta P, Mukhopadhyay R, Wingreen NS (2008) Exponential sensitivity of noise-driven switching in genetic networks. Phys Biol 5: 1-6.
-
(2008)
Phys Biol
, vol.5
, pp. 1-6
-
-
Mehta, P.1
Mukhopadhyay, R.2
Wingreen, N.S.3
-
19
-
-
78649838304
-
Lysogen stability is determined by the frequency of activity bursts from the fate-determining gene
-
Zong C, So LH, Sepúlveda LA, Skinner SO, Golding I (2010) Lysogen stability is determined by the frequency of activity bursts from the fate-determining gene. Mol Syst Biol 6: 440.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 440
-
-
Zong, C.1
So, L.H.2
Sepúlveda, L.A.3
Skinner, S.O.4
Golding, I.5
-
21
-
-
0742288604
-
Potential in stochastic differential equations: Novel construction
-
Ao P (2004) Potential in stochastic differential equations: Novel construction. J Phys A 37: L25-L30.
-
(2004)
J Phys a
, vol.37
-
-
Ao, P.1
-
25
-
-
49449085444
-
The geometric minimum action method: A least action principle on the space of curves
-
Heymann M, Vanden-Eijnden E (2008) The geometric minimum action method: A least action principle on the space of curves. Comm Pure Appl Math 61: 1052-1117.
-
(2008)
Comm Pure Appl Math
, vol.61
, pp. 1052-1117
-
-
Heymann, M.1
Vanden-Eijnden, E.2
-
26
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie DT (1977) Exact stochastic simulation of coupled chemical reactions. J Phys Chem 81: 2340-2361.
-
(1977)
J Phys Chem
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
28
-
-
0012862641
-
Large deviation for two scaled diffusion
-
Liptser RS (1996) Large deviation for two scaled diffusion. Prob Theory Relat Fields 106: 71-104.
-
(1996)
Prob Theory Relat Fields
, vol.106
, pp. 71-104
-
-
Liptser, R.S.1
-
29
-
-
67650917097
-
The large deviation approach to statistical mechanics
-
Touchette H (2009) The large deviation approach to statistical mechanics. Phys Rep 478: 1-69.
-
(2009)
Phys Rep
, vol.478
, pp. 1-69
-
-
Touchette, H.1
-
30
-
-
36449004539
-
Large fluctuations and optimal paths in chemical kinetics
-
Dykman MI, Mori E, Ross J, Hunt PM (1994) Large fluctuations and optimal paths in chemical kinetics. J Phys Chem 100: 5735.
-
(1994)
J Phys Chem
, vol.100
, pp. 5735
-
-
Dykman, M.I.1
Mori, E.2
Ross, J.3
Hunt, P.M.4
-
31
-
-
66349126534
-
Switching rates of multistep reactions
-
Escudero C, Kamenev A (2009) Switching rates of multistep reactions. Phys Rev E 79: 041149.
-
(2009)
Phys Rev e
, vol.79
, pp. 041149
-
-
Escudero, C.1
Kamenev, A.2
-
32
-
-
76749134243
-
Extinction of metastable stochastic populations
-
Assaf M, Meerson B (2010) Extinction of metastable stochastic populations Phys Rev E 81: 021116.
-
(2010)
Phys Rev e
, vol.81
, pp. 021116
-
-
Assaf, M.1
Meerson, B.2
-
33
-
-
0034225547
-
The chemical Langevin equations
-
Gillespie DT (2000), The chemical Langevin equations. J Chem Phys 113: 297-306.
-
(2000)
J Chem Phys
, vol.113
, pp. 297-306
-
-
Gillespie, D.T.1
-
34
-
-
77957757813
-
Zero, one and two-switch models of gene regulation
-
Somkid I, Higham DJ (2010) Zero, one and two-switch models of gene regulation. Discrete Cont Dyn Syst Ser B 14: 495.
-
(2010)
Discrete Cont Dyn Syst Ser B
, vol.14
, pp. 495
-
-
Somkid, I.1
Higham, D.J.2
-
36
-
-
0031162897
-
Limiting exit location distributions in the stochastic exit problem
-
PII S0036139994271753
-
Maier RS, Stein DL (1997) Limiting exit location distributions in the stochastic exit problem. SIAM J Appl Math 57: 752-790. (Pubitemid 127639233)
-
(1997)
SIAM Journal on Applied Mathematics
, vol.57
, Issue.3
, pp. 752-790
-
-
Maier, R.S.1
Stein, D.L.2
-
37
-
-
47549106474
-
Positive feedback of G1 cyclins ensures coherent cell cycle entry
-
DOI 10.1038/nature07118, PII NATURE07118
-
Skotheim JM, Di Talia S, Siggia ED, Cross FR (2008) Positive feedback of G1 cyclins ensures coherent cell cycle entry. Nature 454: 291-296. (Pubitemid 352009994)
-
(2008)
Nature
, vol.454
, Issue.7202
, pp. 291-296
-
-
Skotheim, J.M.1
Di, T.S.2
Siggia, E.D.3
Cross, F.R.4
-
38
-
-
34547604468
-
Noise in gene expression determines cell fate in Bacillus subtilis
-
DOI 10.1126/science.1140818
-
Maamar H, Raj A, Dubnau D (2007) Noise in gene expression determines cell fate in bacillus subtilis. Science 317: 526-529. (Pubitemid 47196119)
-
(2007)
Science
, vol.317
, Issue.5837
, pp. 526-529
-
-
Maamar, H.1
Raj, A.2
Dubnau, D.3
-
39
-
-
2942718723
-
Control of stochasticity in eukaryotic gene expression
-
DOI 10.1126/science.1098641
-
Raser JM, O'Shea EK (2004) Control of stochasticity in eukaryotic gene expression. Science 304: 1811-1814. (Pubitemid 38787899)
-
(2004)
Science
, vol.304
, Issue.5678
, pp. 1811-1814
-
-
Raser, J.M.1
O'Shea, E.K.2
-
41
-
-
0036696910
-
String method for the study of rare events
-
Weinan E, Ren W, Vanden-Eijnden E (2002) String method for the study of rare events. Phy Rev B 66: 052301.
-
(2002)
Phy Rev B
, vol.66
, pp. 052301
-
-
Weinan, E.1
Ren, W.2
Vanden-Eijnden, E.3
|