-
1
-
-
0036500609
-
A genomic regulatory network for development
-
DOI 10.1126/science.1069883
-
E. H. Davidson, J. P. Rast, P. Oliveri, A. Ransick, C. Calestani, C. -H. Yuh, T. Minokawa, G. Amore, V. Hinman, C. Arenas-Mena, O. Otim, C. T. Brown, C. B. Livi, P. Y. Lee, R. Revilla, A. G. Rust, Z. J. Pan, M. J. Schilstra, P. J. C. Clarke, M. I. Arnone, L. Rowen, R. A. Cameron, D. R. McClay, L. Hood, and H. Bolouri, Science SCIEAS 0036-8075 295, 1669 (2002). 10.1126/science.1069883 (Pubitemid 34202895)
-
(2002)
Science
, vol.295
, Issue.5560
, pp. 1669-1678
-
-
Davidson, E.H.1
Rast, J.P.2
Oliveri, P.3
Ransick, A.4
Calestani, C.5
Yuh, C.-H.6
Minokawa, T.7
Amore, G.8
Hinman, V.9
Arenas-Mena, C.10
Otim, O.11
Brown, C.T.12
Livi, C.B.13
Lee, P.Y.14
Revilla, R.15
Rust, A.G.16
Pan, Z.J.17
Schilstra, M.J.18
Clarke, P.J.C.19
Arnone, M.I.20
Rowen, L.21
Cameron, R.A.22
McClay, D.R.23
Hood, L.24
Bolouri, H.25
more..
-
4
-
-
0742288604
-
Potential in stochastic differential equations: Novel construction
-
DOI 10.1088/0305-4470/37/3/L01, PII S0305447004697058
-
P. Ao, J. Phys. A JPHAC5 0305-4470 37, L25 (2004). 10.1088/0305-4470/37/ 3/L01 (Pubitemid 38148924)
-
(2004)
Journal of Physics A: Mathematical and General
, vol.37
, Issue.3
-
-
Ao, P.1
-
5
-
-
18144407314
-
Nonequilibrium thermodynamics and nonlinear kinetics in a cellular signaling switch
-
DOI 10.1103/PhysRevLett.94.028101, 028101
-
H. Qian and T. C. Reluga, Phys. Rev. Lett. PRLTAO 0031-9007 94, 028101 (2005). 10.1103/PhysRevLett.94.028101 (Pubitemid 40620187)
-
(2005)
Physical Review Letters
, vol.94
, Issue.2
, pp. 1-4
-
-
Qian, H.1
Reluga, T.C.2
-
6
-
-
28844496741
-
Self-regulating gene: An exact solution
-
DOI 10.1103/PhysRevE.72.051907, 051907
-
J. E. M. Hornos, D. Schultz, G. C. P. Innocentini, J. Wang, A. M. Walczak, J. N. Onuchic, and P. G. Wolynes, Phys. Rev. E PLEEE8 1063-651X 72, 051907 (2005). 10.1103/PhysRevE.72.051907 (Pubitemid 41777717)
-
(2005)
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
, vol.72
, Issue.5
, pp. 1-5
-
-
Hornos, J.E.M.1
Schultz, D.2
Innocentini, G.C.P.3
Wang, J.4
Walczak, A.M.5
Onuchic, J.N.6
Wolynes, P.G.7
-
7
-
-
34047225832
-
Potential energy landscape and robustness of a gene regulatory network: Toggle switch
-
DOI 10.1371/journal.pcbi.0030060
-
K. Kim and J. Wang, PLOS Comput. Biol. ZZZZZZ 1553-734X 3, e60 (2007). 10.1371/journal.pcbi.0030060 (Pubitemid 46535748)
-
(2007)
PLoS Computational Biology
, vol.3
, Issue.3
, pp. 0565-0577
-
-
Kim, K.-Y.1
Wang, J.2
-
8
-
-
34250320968
-
Quantifying robustness and dissipation cost of yeast cell cycle network: The funneled energy landscape perspectives
-
DOI 10.1529/biophysj.106.094821
-
B. Han and J. Wang, Biophys. J. BIOJAU 0006-3495 92, 3755 (2007). 10.1529/biophysj.106.094821 (Pubitemid 46910564)
-
(2007)
Biophysical Journal
, vol.92
, Issue.11
, pp. 3755-3763
-
-
Han, B.1
Wang, J.2
-
9
-
-
43149090775
-
Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction
-
DOI 10.1073/pnas.0708708105
-
S. Lapidus, B. Han, and J. Wang, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 105, 6039 (2008). 10.1073/pnas.0708708105 (Pubitemid 351758395)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.16
, pp. 6039-6044
-
-
Lapidus, S.1
Han, B.2
Wang, J.3
-
10
-
-
50449104011
-
-
PNASA6 0027-8424,. 10.1073/pnas.0800579105
-
J. Wang, L. Xu, and E. Wang, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 105, 12271 (2008). 10.1073/pnas.0800579105
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 12271
-
-
Wang, J.1
Xu, L.2
Wang, E.3
-
12
-
-
0012021417
-
-
JCPSA6 0021-9606,. 10.1063/1.472727
-
R. Olender and R. Elber, J. Chem. Phys. JCPSA6 0021-9606 105, 9299 (1996). 10.1063/1.472727
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 9299
-
-
Olender, R.1
Elber, R.2
-
13
-
-
26744480095
-
-
CHPLBC 0009-2614,. 10.1016/0009-2614(93)87224-Q
-
J. Wang and P. G. Wolynes, Chem. Phys. Lett. CHPLBC 0009-2614 212, 427 (1993). 10.1016/0009-2614(93)87224-Q
-
(1993)
Chem. Phys. Lett.
, vol.212
, pp. 427
-
-
Wang, J.1
Wolynes, P.G.2
-
14
-
-
0346654615
-
Survival paths for reaction dynamics in fluctuating environments
-
DOI 10.1016/0301-0104(93)E0427-W, Dissipative Dynamics. I.
-
J. Wang and P. G. Wolynes, Chem. Phys. CMPHC2 0301-0104 180, 141 (1994). 10.1016/0301-0104(93)E0427-W (Pubitemid 24767569)
-
(1994)
Chemical Physics
, vol.180
, Issue.2-3
, pp. 141
-
-
Wang, J.1
Wolynes, P.2
-
15
-
-
0001209011
-
-
PRLTAO 0031-9007,. 10.1103/PhysRevLett.76.4861
-
J. Wang, J. N. Onuchic, and P. G. Wolynes, Phys. Rev. Lett. PRLTAO 0031-9007 76, 4861 (1996). 10.1103/PhysRevLett.76.4861
-
(1996)
Phys. Rev. Lett.
, vol.76
, pp. 4861
-
-
Wang, J.1
Onuchic, J.N.2
Wolynes, P.G.3
-
16
-
-
33751152294
-
-
JPCHAX 0022-3654,. 10.1021/jp951325i
-
J. Wang and P. G. Wolynes, J. Phys. Chem. JPCHAX 0022-3654 100, 1129 (1996). 10.1021/jp951325i
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 1129
-
-
Wang, J.1
Wolynes, P.G.2
-
17
-
-
24144499831
-
Quantifying kinetic paths of protein folding
-
DOI 10.1529/biophysj.104.055186
-
J. Wang, K. Zhang, H. Y. Lu, and E. K. Wang, Biophys. J. BIOJAU 0006-3495 89, 1612 (2005). 10.1529/biophysj.104.055186 (Pubitemid 41233518)
-
(2005)
Biophysical Journal
, vol.89
, Issue.3
, pp. 1612-1620
-
-
Wang, J.1
Zhang, K.2
Lu, H.3
Wang, E.4
-
18
-
-
33646350033
-
Dominant kinetic paths on biomolecular binding-folding energy landscape
-
DOI 10.1103/PhysRevLett.96.168101
-
J. Wang, K. Zhang, H. Y. Lu, and E. K. Wang, Phys. Rev. Lett. PRLTAO 0031-9007 96, 168101 (2006). 10.1103/PhysRevLett.96.168101 (Pubitemid 43667800)
-
(2006)
Physical Review Letters
, vol.96
, Issue.16
, pp. 168101
-
-
Wang, J.1
Zhang, K.2
Lu, H.3
Wang, E.4
-
19
-
-
33748518934
-
Dominant pathways in protein folding
-
DOI 10.1103/PhysRevLett.97.108101
-
P, Faccioli, M. Sega, F. Pederiva, and H. Orland, Phys. Rev. Lett. PRLTAO 0031-9007 97, 108101 (2006). 10.1103/PhysRevLett.97.108101 (Pubitemid 44362956)
-
(2006)
Physical Review Letters
, vol.97
, Issue.10
, pp. 108101
-
-
Faccioli, P.1
Sega, M.2
Pederiva, F.3
Orland, H.4
-
20
-
-
18144390105
-
-
PLEEE8 1063-651X,. 10.1103/PhysRevE.48.931
-
R. S. Maier and D. L. Stein, Phys. Rev. E PLEEE8 1063-651X 48, 931 (1993). 10.1103/PhysRevE.48.931
-
(1993)
Phys. Rev. e
, vol.48
, pp. 931
-
-
Maier, R.S.1
Stein, D.L.2
-
21
-
-
4243911221
-
-
PRLTAO 0031-9007,. 10.1103/PhysRevLett.88.048101
-
E. Aurell and K. Sneppen, Phys. Rev. Lett. PRLTAO 0031-9007 88, 048101 (2002). 10.1103/PhysRevLett.88.048101
-
(2002)
Phys. Rev. Lett.
, vol.88
, pp. 048101
-
-
Aurell, E.1
Sneppen, K.2
-
22
-
-
41349084732
-
Optimal path to epigenetic switching
-
DOI 10.1103/PhysRevE.71.011902, 011902
-
D. M. Roma, R. A. O'Flanagan, A. E. Ruckenstein, A. M. Sengupta, and R. Mukhopadhyay, Phys. Rev. E PLEEE8 1063-651X 71, 011902 (2005). 10.1103/PhysRevE.71.011902 (Pubitemid 40619963)
-
(2005)
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
, vol.71
, Issue.1
-
-
Roma, D.M.1
O'Flanagan, R.A.2
Ruckenstein, A.E.3
Sengupta, A.M.4
Mukhopadhyay, R.5
-
23
-
-
0022429106
-
-
JMOBAK 0022-2836,. 10.1016/0022-2836(85)90086-5
-
M. A. Shea and G. K. Ackers, J. Mol. Biol. JMOBAK 0022-2836 181, 211 (1985). 10.1016/0022-2836(85)90086-5
-
(1985)
J. Mol. Biol.
, vol.181
, pp. 211
-
-
Shea, M.A.1
Ackers, G.K.2
-
24
-
-
0033517148
-
Robustness of a gene regulatory circuit
-
DOI 10.1093/emboj/18.15.4299
-
J. W. Little, D. P. Shepley, and D. W. Wert, EMBO J. EMJODG 0261-4189 18, 4299 (1999). 10.1093/emboj/18.15.4299 (Pubitemid 29364132)
-
(1999)
EMBO Journal
, vol.18
, Issue.15
, pp. 4299-4307
-
-
Little, J.W.1
Shepley, D.P.2
Wert, D.W.3
-
25
-
-
11144321198
-
Robustness, stability and efficiency of phage λ genetic switch: Dynamical structure analysis
-
DOI 10.1142/S0219720004000946, PII S0219720004000946
-
X. M. Zhu, L. Yin, L. Hood, and P. Ao, J. Bioinf. Comput. Biol. JBCBBK 0219-7200 2, 785 (2004). 10.1142/S0219720004000946 (Pubitemid 40021758)
-
(2004)
Journal of Bioinformatics and Computational Biology
, vol.2
, Issue.4
, pp. 785-817
-
-
Zhu, X.-M.1
Yin, L.2
Hood, L.3
Ao, P.4
-
26
-
-
0036790975
-
-
PNASA6 0027-8424,. 10.1073/pnas.162041399
-
P. S. Swain, M. B. Elowitz, and E. D. Siggia, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 99, 12795 (2002). 10.1073/pnas.162041399
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 12795
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
28
-
-
41349109494
-
-
PLEEE8 1063-651X,. 10.1103/PhysRevE.65.016102
-
H. Qian, Phys. Rev. E PLEEE8 1063-651X 65, 016102 (2001). 10.1103/PhysRevE.65.016102
-
(2001)
Phys. Rev. e
, vol.65
, pp. 016102
-
-
Qian, H.1
-
30
-
-
67749147584
-
-
PNASA6 0027-8424,. 10.1073/pnas.0901178106
-
H. S. Chung, J. M. Louis, and W. A. Eaton, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 106, 11837 (2009). 10.1073/pnas.0901178106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 11837
-
-
Chung, H.S.1
Louis, J.M.2
Eaton, W.A.3
-
31
-
-
30044434963
-
Absolute rate theories of epigenetic stability
-
DOI 10.1073/pnas.0509547102
-
A. M. Walczak, J. N. Onuchic, and P. G. Wolynes, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 102, 18926 (2005). 10.1073/pnas.0509547102 (Pubitemid 43049543)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.52
, pp. 18926-18931
-
-
Walczak, A.M.1
Onuchic, J.N.2
Wolynes, P.G.3
-
32
-
-
59849113447
-
-
in, edited by S. Choi (Humana, Totowa), 10.1007/978-1-59745-531-2-18
-
X. M. Zhu, L. Yin, L. Hood, D. Galas, and P. Ao, in Introduction to Systems Biology, edited by, S. Choi, (Humana, Totowa, 2007), pp. 336-371. 10.1007/978-1-59745-531-2-18
-
(2007)
Introduction to Systems Biology
, pp. 336-371
-
-
Zhu, X.M.1
Yin, L.2
Hood, L.3
Galas, D.4
Ao, P.5
-
33
-
-
16444370098
-
-
JPCBFK 1089-5647,. 10.1021/jp983774z
-
R. Elber, J. Meller, and R. Olender, J. Phys. Chem. B JPCBFK 1089-5647 103, 899 (1999). 10.1021/jp983774z
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 899
-
-
Elber, R.1
Meller, J.2
Olender, R.3
-
34
-
-
29444451132
-
-
APNYA6 0003-4916,. 10.1016/0003-4916(67)90200-X
-
J. S. Langer, Ann. Phys. (N.Y.) APNYA6 0003-4916 41, 108 (1967). 10.1016/0003-4916(67)90200-X
-
(1967)
Ann. Phys. (N.Y.)
, vol.41
, pp. 108
-
-
Langer, J.S.1
-
35
-
-
0001387583
-
-
PRVDAQ 0556-2821,. 10.1103/PhysRevD.15.2929
-
S. Coleman, Phys. Rev. D PRVDAQ 0556-2821 15, 2929 (1977). 10.1103/PhysRevD.15.2929
-
(1977)
Phys. Rev. D
, vol.15
, pp. 2929
-
-
Coleman, S.1
-
36
-
-
19644367467
-
-
PRVDAQ 0556-2821,. 10.1103/PhysRevD.16.1762
-
C. G. Callan, Jr. and S. Coleman, Phys. Rev. D PRVDAQ 0556-2821 16, 1762 (1977). 10.1103/PhysRevD.16.1762
-
(1977)
Phys. Rev. D
, vol.16
, pp. 1762
-
-
Callan, Jr.C.G.1
Coleman, S.2
-
37
-
-
33645584124
-
-
PFLDAS 0031-9171,. 10.1063/1.1693562
-
J. B. Jalickee, F. W. Wiegel, and D. J. Vezzetti, Phys. Fluids PFLDAS 0031-9171 14, 1041 (1971). 10.1063/1.1693562
-
(1971)
Phys. Fluids
, vol.14
, pp. 1041
-
-
Jalickee, J.B.1
Wiegel, F.W.2
Vezzetti, D.J.3
|