메뉴 건너뛰기




Volumn 185, Issue 2, 2014, Pages 203-214

Structure-guided engineering of Anticalins with improved binding behavior and biochemical characteristics for application in radio-immuno imaging and/or therapy

Author keywords

Crystal structure; Lipocalin; Metal binding; Protein engineering; Rational design

Indexed keywords

CRYSTAL STRUCTURE; LIPOCALIN; METAL BINDING; PROTEIN ENGINEERING; RATIONAL DESIGN;

EID: 84894986114     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2013.03.009     Document Type: Article
Times cited : (22)

References (61)
  • 3
    • 34848813590 scopus 로고    scopus 로고
    • Development of radioimmunotherapeutic and diagnostic antibodies: an inside-out view
    • Boswell C.A., Brechbiel M.W. Development of radioimmunotherapeutic and diagnostic antibodies: an inside-out view. Nucl. Med. Biol. 2007, 34:757-778.
    • (2007) Nucl. Med. Biol. , vol.34 , pp. 757-778
    • Boswell, C.A.1    Brechbiel, M.W.2
  • 4
  • 5
    • 0030767713 scopus 로고    scopus 로고
    • Free R value: cross-validation in crystallography
    • Brunger A.T. Free R value: cross-validation in crystallography. Methods Enzymol. 1997, 277:366-396.
    • (1997) Methods Enzymol. , vol.277 , pp. 366-396
    • Brunger, A.T.1
  • 6
    • 0028103275 scopus 로고
    • The CCP4 suite: programs for protein crystallography
    • CCP4
    • The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 1994, 50:760-763. CCP4.
    • (1994) Acta Crystallogr. D Biol. Crystallogr. , vol.50 , pp. 760-763
  • 7
    • 0037467468 scopus 로고    scopus 로고
    • A rare earth-DOTA-binding antibody: probe properties and binding affinity across the lanthanide series
    • Corneillie T.M., Whetstone P.A., Fisher A.J., Meares C.F. A rare earth-DOTA-binding antibody: probe properties and binding affinity across the lanthanide series. J. Am. Chem. Soc. 2003, 125:3436-3437.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 3436-3437
    • Corneillie, T.M.1    Whetstone, P.A.2    Fisher, A.J.3    Meares, C.F.4
  • 9
    • 0030043489 scopus 로고    scopus 로고
    • Cation-π interactions in chemistry and biology: a new view of benzene, Phe, Tyr, and Trp
    • Dougherty D.A. Cation-π interactions in chemistry and biology: a new view of benzene, Phe, Tyr, and Trp. Science 1996, 271:163-168.
    • (1996) Science , vol.271 , pp. 163-168
    • Dougherty, D.A.1
  • 12
    • 0022539027 scopus 로고
    • Peptide and protein molecular weight determination by electrophoresis using a high-molarity tris buffer system without urea
    • Fling S.P., Gregerson D.S. Peptide and protein molecular weight determination by electrophoresis using a high-molarity tris buffer system without urea. Anal. Biochem. 1986, 155:83-88.
    • (1986) Anal. Biochem. , vol.155 , pp. 83-88
    • Fling, S.P.1    Gregerson, D.S.2
  • 13
    • 0029790266 scopus 로고    scopus 로고
    • The lipocalin protein family: structure and function
    • Flower D.R. The lipocalin protein family: structure and function. Biochem. J. 1996, 318:1-14.
    • (1996) Biochem. J. , vol.318 , pp. 1-14
    • Flower, D.R.1
  • 14
    • 84856868697 scopus 로고    scopus 로고
    • Positive charges on the translocating polypeptide chain arrest movement through the translocon
    • Fujita H., Yamagishi M., Kida Y., Sakaguchi M. Positive charges on the translocating polypeptide chain arrest movement through the translocon. J. Cell Sci. 2011, 124:4184-4193.
    • (2011) J. Cell Sci. , vol.124 , pp. 4184-4193
    • Fujita, H.1    Yamagishi, M.2    Kida, Y.3    Sakaguchi, M.4
  • 15
    • 0043122944 scopus 로고    scopus 로고
    • ExPASy: The proteomics server for in-depth protein knowledge and analysis
    • Gasteiger E., Gattiker A., Hoogland C., Ivanyi I., Appel R.D., et al. ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 2003, 31:3784-3788.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3784-3788
    • Gasteiger, E.1    Gattiker, A.2    Hoogland, C.3    Ivanyi, I.4    Appel, R.D.5
  • 16
    • 67649872364 scopus 로고    scopus 로고
    • Engineered protein scaffolds as next-generation antibody therapeutics
    • Gebauer M., Skerra A. Engineered protein scaffolds as next-generation antibody therapeutics. Curr. Opin. Chem. Biol. 2009, 13:245-255.
    • (2009) Curr. Opin. Chem. Biol. , vol.13 , pp. 245-255
    • Gebauer, M.1    Skerra, A.2
  • 17
    • 84855604118 scopus 로고    scopus 로고
    • Anticalins: small engineered binding proteins based on the lipocalin scaffold
    • Gebauer M., Skerra A. Anticalins: small engineered binding proteins based on the lipocalin scaffold. Methods Enzymol. 2012, 503:157-188.
    • (2012) Methods Enzymol. , vol.503 , pp. 157-188
    • Gebauer, M.1    Skerra, A.2
  • 18
    • 84873414124 scopus 로고    scopus 로고
    • Combinatorial design of an Anticalin directed against the extra-domain B for the specific targeting of oncofetal fibronectin
    • Gebauer M., Schiefner A., Matschiner G., Skerra A. Combinatorial design of an Anticalin directed against the extra-domain B for the specific targeting of oncofetal fibronectin. J. Mol. Biol. 2013, 425:780-802.
    • (2013) J. Mol. Biol. , vol.425 , pp. 780-802
    • Gebauer, M.1    Schiefner, A.2    Matschiner, G.3    Skerra, A.4
  • 19
    • 0036865552 scopus 로고    scopus 로고
    • The neutrophil lipocalin NGAL is a bacteriostatic agent that interferes with siderophore-mediated iron acquisition
    • Goetz D.H., Holmes M.A., Borregaard N., Bluhm M.E., Raymond K.N., et al. The neutrophil lipocalin NGAL is a bacteriostatic agent that interferes with siderophore-mediated iron acquisition. Mol. Cell 2002, 10:1033-1043.
    • (2002) Mol. Cell , vol.10 , pp. 1033-1043
    • Goetz, D.H.1    Holmes, M.A.2    Borregaard, N.3    Bluhm, M.E.4    Raymond, K.N.5
  • 20
  • 22
    • 27144432842 scopus 로고    scopus 로고
    • Engineered antibody fragments and the rise of single domains
    • Holliger P., Hudson P.J. Engineered antibody fragments and the rise of single domains. Nat. Biotechnol. 2005, 23:1126-1136.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 1126-1136
    • Holliger, P.1    Hudson, P.J.2
  • 24
    • 33646150437 scopus 로고    scopus 로고
    • Kinetic analysis of a high-affinity antibody/antigen interaction performed by multiple Biacore users
    • Katsamba P.S., Navratilova I., Calderon-Cacia M., Fan L., Thornton K., et al. Kinetic analysis of a high-affinity antibody/antigen interaction performed by multiple Biacore users. Anal. Biochem. 2006, 352:208-221.
    • (2006) Anal. Biochem. , vol.352 , pp. 208-221
    • Katsamba, P.S.1    Navratilova, I.2    Calderon-Cacia, M.3    Fan, L.4    Thornton, K.5
  • 26
    • 30344482513 scopus 로고    scopus 로고
    • Tailoring antibodies for radionuclide delivery
    • Kenanova V., Wu A.M. Tailoring antibodies for radionuclide delivery. Expert Opin. Drug Deliv. 2006, 3:53-70.
    • (2006) Expert Opin. Drug Deliv. , vol.3 , pp. 53-70
    • Kenanova, V.1    Wu, A.M.2
  • 27
    • 67749142080 scopus 로고    scopus 로고
    • High-affinity recognition of lanthanide(III) chelate complexes by a reprogrammed human lipocalin 2
    • Kim H.J., Eichinger A., Skerra A. High-affinity recognition of lanthanide(III) chelate complexes by a reprogrammed human lipocalin 2. J. Am. Chem. Soc. 2009, 131:3565-3576.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 3565-3576
    • Kim, H.J.1    Eichinger, A.2    Skerra, A.3
  • 28
    • 84855607859 scopus 로고    scopus 로고
    • Design and engineering of synthetic binding proteins using nonantibody scaffolds
    • CRC Press, Boca Raton, Florida, S.J. Park, J.R. Cochran (Eds.)
    • Koide S. Design and engineering of synthetic binding proteins using nonantibody scaffolds. Protein Engineering and Design 2010, 109-130. CRC Press, Boca Raton, Florida. S.J. Park, J.R. Cochran (Eds.).
    • (2010) Protein Engineering and Design , pp. 109-130
    • Koide, S.1
  • 29
    • 34548232365 scopus 로고    scopus 로고
    • Inference of macromolecular assemblies from crystalline state
    • Krissinel E., Henrick K. Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 2007, 372:774-797.
    • (2007) J. Mol. Biol. , vol.372 , pp. 774-797
    • Krissinel, E.1    Henrick, K.2
  • 30
    • 50249136103 scopus 로고    scopus 로고
    • Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7
    • Langer G., Cohen S.X., Lamzin V.S., Perrakis A. Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7. Nat. Protoc. 2008, 3:1171-1179.
    • (2008) Nat. Protoc. , vol.3 , pp. 1171-1179
    • Langer, G.1    Cohen, S.X.2    Lamzin, V.S.3    Perrakis, A.4
  • 31
  • 32
    • 77953130101 scopus 로고    scopus 로고
    • Affibody molecules: engineered proteins for therapeutic, diagnostic and biotechnological applications
    • Löfblom J., Feldwisch J., Tolmachev V., Carlsson J., Ståhl S., et al. Affibody molecules: engineered proteins for therapeutic, diagnostic and biotechnological applications. FEBS Lett. 2010, 584:2670-2680.
    • (2010) FEBS Lett. , vol.584 , pp. 2670-2680
    • Löfblom, J.1    Feldwisch, J.2    Tolmachev, V.3    Carlsson, J.4    Ståhl, S.5
  • 33
    • 0027522084 scopus 로고
    • How the anti-(metal chelate) antibody CHA255 is specific for the metal ion of its antigen: X-ray structures for two Fab'/hapten complexes with different metals in the chelate
    • Love R.A., Villafranca J.E., Aust R.M., Nakamura K.K., Jue R.A., et al. How the anti-(metal chelate) antibody CHA255 is specific for the metal ion of its antigen: X-ray structures for two Fab'/hapten complexes with different metals in the chelate. Biochemistry 1993, 32:10950-10959.
    • (1993) Biochemistry , vol.32 , pp. 10950-10959
    • Love, R.A.1    Villafranca, J.E.2    Aust, R.M.3    Nakamura, K.K.4    Jue, R.A.5
  • 35
    • 84855215798 scopus 로고    scopus 로고
    • Protein scaffold-based molecular probes for cancer molecular imaging
    • Miao Z., Levi J., Cheng Z. Protein scaffold-based molecular probes for cancer molecular imaging. Amino Acids 2011, 41:1037-1047.
    • (2011) Amino Acids , vol.41 , pp. 1037-1047
    • Miao, Z.1    Levi, J.2    Cheng, Z.3
  • 37
    • 0032701484 scopus 로고    scopus 로고
    • Improving biosensor analysis
    • Myszka D.G. Improving biosensor analysis. J. Mol. Recognit. 1999, 12:279-284.
    • (1999) J. Mol. Recognit. , vol.12 , pp. 279-284
    • Myszka, D.G.1
  • 38
    • 79551688075 scopus 로고    scopus 로고
    • Engineering an antibody with picomolar affinity to DOTA chelates of multiple radionuclides for pretargeted radioimmunotherapy and imaging
    • Orcutt K.D., Slusarczyk A.L., Cieslewicz M., Ruiz-Yi B., Bhushan K.R., et al. Engineering an antibody with picomolar affinity to DOTA chelates of multiple radionuclides for pretargeted radioimmunotherapy and imaging. Nucl. Med. Biol. 2011, 38:223-233.
    • (2011) Nucl. Med. Biol. , vol.38 , pp. 223-233
    • Orcutt, K.D.1    Slusarczyk, A.L.2    Cieslewicz, M.3    Ruiz-Yi, B.4    Bhushan, K.R.5
  • 39
    • 59949104434 scopus 로고    scopus 로고
    • Methionine oxidation in human IgG2 Fc decreases binding affinities to protein A and FcRn
    • Pan H., Chen K., Chu L., Kinderman F., Apostol I., et al. Methionine oxidation in human IgG2 Fc decreases binding affinities to protein A and FcRn. Protein Sci. 2009, 18:424-433.
    • (2009) Protein Sci. , vol.18 , pp. 424-433
    • Pan, H.1    Chen, K.2    Chu, L.3    Kinderman, F.4    Apostol, I.5
  • 41
    • 0037389797 scopus 로고    scopus 로고
    • Enterobactin: an archetype for microbial iron transport
    • Raymond K.N., Dertz E.A., Kim S.S. Enterobactin: an archetype for microbial iron transport. Proc. Natl. Acad. Sci. USA 2003, 100:3584-3588.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 3584-3588
    • Raymond, K.N.1    Dertz, E.A.2    Kim, S.S.3
  • 42
    • 78651387929 scopus 로고    scopus 로고
    • Antibody-based therapeutics to watch in 2011
    • Reichert J.M. Antibody-based therapeutics to watch in 2011. MAbs 2011, 3:76-99.
    • (2011) MAbs , vol.3 , pp. 76-99
    • Reichert, J.M.1
  • 43
    • 23844469508 scopus 로고    scopus 로고
    • Pretargeted radioimmunotherapy of mesothelin-expressing cancer using a tetravalent single-chain Fv-streptavidin fusion protein
    • Sato N., Hassan R., Axworthy D.B., Wong K.J., Yu S., et al. Pretargeted radioimmunotherapy of mesothelin-expressing cancer using a tetravalent single-chain Fv-streptavidin fusion protein. J. Nucl. Med. 2005, 46:1201-1209.
    • (2005) J. Nucl. Med. , vol.46 , pp. 1201-1209
    • Sato, N.1    Hassan, R.2    Axworthy, D.B.3    Wong, K.J.4    Yu, S.5
  • 44
    • 0034780636 scopus 로고    scopus 로고
    • Duocalins: engineered ligand-binding proteins with dual specificity derived from the lipocalin fold
    • Schlehuber S., Skerra A. Duocalins: engineered ligand-binding proteins with dual specificity derived from the lipocalin fold. Biol. Chem. 2001, 382:1335-1342.
    • (2001) Biol. Chem. , vol.382 , pp. 1335-1342
    • Schlehuber, S.1    Skerra, A.2
  • 45
    • 0037007445 scopus 로고    scopus 로고
    • Tuning ligand affinity, specificity, and folding stability of an engineered lipocalin variant - a so-called 'anticalin' - using a molecular random approach
    • Schlehuber S., Skerra A. Tuning ligand affinity, specificity, and folding stability of an engineered lipocalin variant - a so-called 'anticalin' - using a molecular random approach. Biophys. Chem. 2002, 96:213-228.
    • (2002) Biophys. Chem. , vol.96 , pp. 213-228
    • Schlehuber, S.1    Skerra, A.2
  • 46
    • 0034646561 scopus 로고    scopus 로고
    • A novel type of receptor protein, based on the lipocalin scaffold, with specificity for digoxigenin
    • Schlehuber S., Beste G., Skerra A. A novel type of receptor protein, based on the lipocalin scaffold, with specificity for digoxigenin. J. Mol. Biol. 2000, 297:1105-1120.
    • (2000) J. Mol. Biol. , vol.297 , pp. 1105-1120
    • Schlehuber, S.1    Beste, G.2    Skerra, A.3
  • 47
    • 34250766201 scopus 로고    scopus 로고
    • The Strep-tag system for one-step purification and high-affinity detection or capturing of proteins
    • Schmidt T.G., Skerra A. The Strep-tag system for one-step purification and high-affinity detection or capturing of proteins. Nat. Protoc. 2007, 2:1528-1535.
    • (2007) Nat. Protoc. , vol.2 , pp. 1528-1535
    • Schmidt, T.G.1    Skerra, A.2
  • 48
    • 66349127669 scopus 로고    scopus 로고
    • An engineered lipocalin specific for CTLA-4 reveals a combining site with structural and conformational features similar to antibodies
    • Schönfeld D., Matschiner G., Chatwell L., Trentmann S., Gille H., et al. An engineered lipocalin specific for CTLA-4 reveals a combining site with structural and conformational features similar to antibodies. Proc. Natl. Acad. Sci. USA 2009, 106:8198-8203.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 8198-8203
    • Schönfeld, D.1    Matschiner, G.2    Chatwell, L.3    Trentmann, S.4    Gille, H.5
  • 49
    • 79958079887 scopus 로고    scopus 로고
    • A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions
    • Shapovalov M.V., Dunbrack R.L. A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions. Structure 2011, 19:844-858.
    • (2011) Structure , vol.19 , pp. 844-858
    • Shapovalov, M.V.1    Dunbrack, R.L.2
  • 50
    • 26444440483 scopus 로고    scopus 로고
    • Improving the delivery of radionuclides for imaging and therapy of cancer using pretargeting methods
    • Sharkey R.M., Karacay H., Cardillo T.M., Chang C.H., McBride W.J., et al. Improving the delivery of radionuclides for imaging and therapy of cancer using pretargeting methods. Clin. Cancer Res. 2005, 11:7109s-7121s.
    • (2005) Clin. Cancer Res. , vol.11
    • Sharkey, R.M.1    Karacay, H.2    Cardillo, T.M.3    Chang, C.H.4    McBride, W.J.5
  • 53
    • 0034684235 scopus 로고    scopus 로고
    • Lipocalins as a scaffold
    • Skerra A. Lipocalins as a scaffold. Biochim. Biophys. Acta 2000, 1482:337-350.
    • (2000) Biochim. Biophys. Acta , vol.1482 , pp. 337-350
    • Skerra, A.1
  • 54
    • 34547911739 scopus 로고    scopus 로고
    • Anticalins as alternative binding proteins for therapeutic use
    • Skerra A. Anticalins as alternative binding proteins for therapeutic use. Curr. Opin. Mol. Ther. 2007, 9:336-344.
    • (2007) Curr. Opin. Mol. Ther. , vol.9 , pp. 336-344
    • Skerra, A.1
  • 55
    • 34548522063 scopus 로고    scopus 로고
    • Alternative non-antibody scaffolds for molecular recognition
    • Skerra A. Alternative non-antibody scaffolds for molecular recognition. Curr. Opin. Biotechnol. 2007, 18:295-304.
    • (2007) Curr. Opin. Biotechnol. , vol.18 , pp. 295-304
    • Skerra, A.1
  • 56
    • 43549110330 scopus 로고    scopus 로고
    • Alternative binding proteins: anticalins - harnessing the structural plasticity of the lipocalin ligand pocket to engineer novel binding activities
    • Skerra A. Alternative binding proteins: anticalins - harnessing the structural plasticity of the lipocalin ligand pocket to engineer novel binding activities. FEBS J. 2008, 275:2677-2683.
    • (2008) FEBS J. , vol.275 , pp. 2677-2683
    • Skerra, A.1
  • 57
    • 80054092984 scopus 로고    scopus 로고
    • Antibody-radionuclide conjugates for cancer therapy: historical considerations and new trends
    • Steiner M., Neri D. Antibody-radionuclide conjugates for cancer therapy: historical considerations and new trends. Clin. Cancer Res. 2011, 17:6406-6416.
    • (2011) Clin. Cancer Res. , vol.17 , pp. 6406-6416
    • Steiner, M.1    Neri, D.2
  • 59
    • 84864504946 scopus 로고    scopus 로고
    • Radioimmunotherapy for B-cell non-hodgkin lymphomas
    • Tomblyn M. Radioimmunotherapy for B-cell non-hodgkin lymphomas. Cancer Control 2012, 19:196-203.
    • (2012) Cancer Control , vol.19 , pp. 196-203
    • Tomblyn, M.1
  • 60
    • 9344223986 scopus 로고    scopus 로고
    • Human antibodies with sub-nanomolar affinities isolated from a large non-immunized phage display library
    • Vaughan T.J., Williams A.J., Pritchard K., Osbourn J.K., Pope A.R., et al. Human antibodies with sub-nanomolar affinities isolated from a large non-immunized phage display library. Nat. Biotechnol. 1996, 14:309-314.
    • (1996) Nat. Biotechnol. , vol.14 , pp. 309-314
    • Vaughan, T.J.1    Williams, A.J.2    Pritchard, K.3    Osbourn, J.K.4    Pope, A.R.5
  • 61
    • 34547593171 scopus 로고    scopus 로고
    • NQ-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures
    • Weichenberger C.X., Sippl M.J. NQ-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures. Nucleic Acids Res. 2007, 35:W403-W406.
    • (2007) Nucleic Acids Res. , vol.35
    • Weichenberger, C.X.1    Sippl, M.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.