-
1
-
-
33747019241
-
Differences in the evolutionary history of disease genes affected by dominant or recessive mutations
-
S. J. Furney, M. M. Albà, and N. López-Bigas, "Differences in the evolutionary history of disease genes affected by dominant or recessive mutations," BMC genomics, vol. 7, no. 1, p. 165, 2006.
-
(2006)
BMC Genomics
, vol.7
, Issue.1
, pp. 165
-
-
Furney, S.J.1
Albà, M.M.2
López-Bigas, N.3
-
2
-
-
34548108138
-
Targeting virulence: A new paradigm for antimicrobial therapy
-
A. E. Clatworthy, E. Pierson, and D. T. Hung, "Targeting virulence: a new paradigm for antimicrobial therapy," Nature chemical biology, vol. 3, no. 9, pp. 541-548, 2007.
-
(2007)
Nature Chemical Biology
, vol.3
, Issue.9
, pp. 541-548
-
-
Clatworthy, A.E.1
Pierson, E.2
Hung, D.T.3
-
3
-
-
71449100299
-
A systems biology tour de force for a near-minimal bacterium
-
J. I. Glass, C. A. Hutchison III, H. O. Smith, and J. C. Venter, "A systems biology tour de force for a near-minimal bacterium," Molecular systems biology, vol. 5, no. 1, 2009.
-
(2009)
Molecular Systems Biology
, vol.5
, Issue.1
-
-
Glass, J.I.1
Hutchison III, C.A.2
Smith, H.O.3
Venter, J.C.4
-
4
-
-
0037173615
-
Functional profiling of the saccharomyces cerevisiae genome
-
G. Giaever, A. M. Chu, L. Ni, C. Connelly, L. Riles, S. Veronneau, S. Dow, A. Lucau-Danila, K. Anderson, B. Andre et al., "Functional profiling of the saccharomyces cerevisiae genome," Nature, vol. 418, no. 6896, pp. 387-391, 2002.
-
(2002)
Nature
, vol.418
, Issue.6896
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Veronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
Andre, B.10
-
5
-
-
20444424942
-
Genome-wide screening for gene function using rnai in mammalian cells
-
L. M. Cullen and G. M. Arndt, "Genome-wide screening for gene function using rnai in mammalian cells," Immunology and cell biology, vol. 83, no. 3, pp. 217-223, 2005.
-
(2005)
Immunology and Cell Biology
, vol.83
, Issue.3
, pp. 217-223
-
-
Cullen, L.M.1
Arndt, G.M.2
-
6
-
-
0141818929
-
Large-scale essential gene identification in candida albicans and applications to antifungal drug discovery
-
T. Roemer, B. Jiang, J. Davison, T. Ketela, K. Veillette, A. Breton, F. Tandia, A. Linteau, S. Sillaots, C. Marta et al., "Large-scale essential gene identification in candida albicans and applications to antifungal drug discovery," Molecular microbiology, vol. 50, no. 1, pp. 167-181, 2003.
-
(2003)
Molecular Microbiology
, vol.50
, Issue.1
, pp. 167-181
-
-
Roemer, T.1
Jiang, B.2
Davison, J.3
Ketela, T.4
Veillette, K.5
Breton, A.6
Tandia, F.7
Linteau, A.8
Sillaots, S.9
Marta, C.10
-
7
-
-
0035799707
-
Lethality and centrality in protein networks
-
H. Jeong, S. P. Mason, A.-L. Barabási, and Z. N. Oltvai, "Lethality and centrality in protein networks," Nature, vol. 411, no. 6833, pp. 41-42, 2001.
-
(2001)
Nature
, vol.411
, Issue.6833
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabási, A.-L.3
Oltvai, Z.N.4
-
8
-
-
16344381521
-
Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks
-
M. W. Hahn and A. D. Kern, "Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks," Molecular Biology and Evolution, vol. 22, no. 4, pp. 803-806, 2005.
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.4
, pp. 803-806
-
-
Hahn, M.W.1
Kern, A.D.2
-
9
-
-
27744469130
-
High-betweenness proteins in the yeast protein interaction network
-
M. P. Joy, A. Brock, D. E. Ingber, and S. Huang, "High-betweenness proteins in the yeast protein interaction network," BioMed Research International, vol. 2005, no. 2, pp. 96-103, 2005.
-
(2005)
BioMed Research International
, vol.2005
, Issue.2
, pp. 96-103
-
-
Joy, M.P.1
Brock, A.2
Ingber, D.E.3
Huang, S.4
-
10
-
-
0038700482
-
Centers of complex networks
-
S. Wuchty and P. F. Stadler, "Centers of complex networks," Journal of Theoretical Biology, vol. 223, no. 1, pp. 45-53, 2003.
-
(2003)
Journal of Theoretical Biology
, vol.223
, Issue.1
, pp. 45-53
-
-
Wuchty, S.1
Stadler, P.F.2
-
11
-
-
26944450851
-
Subgraph centrality in complex networks
-
E. Estrada and J. A. Rodríguez-Velázquez, "Subgraph centrality in complex networks," Physical Review E, vol. 71, no. 5, p. 056103, 2005.
-
(2005)
Physical Review E
, vol.71
, Issue.5
, pp. 056103
-
-
Estrada, E.1
Rodríguez-Velázquez, J.A.2
-
12
-
-
84936824655
-
Power and centrality: A family of measures
-
P. Bonacich, "Power and centrality: A family of measures," American journal of sociology, pp. 1170-1182, 1987.
-
(1987)
American Journal of Sociology
, pp. 1170-1182
-
-
Bonacich, P.1
-
13
-
-
45249126392
-
Rethinking centrality: Methods and examples
-
K. Stephenson and M. Zelen, "Rethinking centrality: Methods and examples," Social Networks, vol. 11, no. 1, pp. 1-37, 1989.
-
(1989)
Social Networks
, vol.11
, Issue.1
, pp. 1-37
-
-
Stephenson, K.1
Zelen, M.2
-
14
-
-
84861492539
-
Identification of essential proteins based on edge clustering coefficient
-
J. Wang, M. Li, H. Wang, and Y. Pan, "Identification of essential proteins based on edge clustering coefficient," Computational Biology and Bioinformatics, IEEE/ACM Transactions on, vol. 9, no. 4, pp. 1070-1080, 2012.
-
(2012)
Computational Biology and Bioinformatics, IEEE/ACM Transactions on
, vol.9
, Issue.4
, pp. 1070-1080
-
-
Wang, J.1
Li, M.2
Wang, H.3
Pan, Y.4
-
15
-
-
34547787599
-
A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality
-
G. T. Hart, I. Lee, and E. M. Marcotte, "A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality," BMC bioinformatics, vol. 8, no. 1, p. 236, 2007.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1
, pp. 236
-
-
Hart, G.T.1
Lee, I.2
Marcotte, E.M.3
-
16
-
-
79955847235
-
Prediction of essential proteins by integration of ppi network topology and protein complexes information
-
Springer
-
J. Ren, J. Wang, M. Li, H. Wang, and B. Liu, "Prediction of essential proteins by integration of ppi network topology and protein complexes information," in Bioinformatics Research and Applications. Springer, 2011, pp. 12-24.
-
(2011)
Bioinformatics Research and Applications
, pp. 12-24
-
-
Ren, J.1
Wang, J.2
Li, M.3
Wang, H.4
Liu, B.5
-
17
-
-
84862787765
-
A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data
-
M. Li, H. Zhang, J.-x. Wang, and Y. Pan, "A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data," BMC systems biology, vol. 6, no. 1, p. 15, 2012.
-
(2012)
BMC Systems Biology
, vol.6
, Issue.1
, pp. 15
-
-
Li, M.1
Zhang, H.2
Wang, J.-X.3
Pan, Y.4
-
18
-
-
0036078078
-
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
-
I. K. Jordan, I. B. Rogozin, Y. I. Wolf, and E. V. Koonin, "Essential genes are more evolutionarily conserved than are nonessential genes in bacteria," Genome research, vol. 12, no. 6, pp. 962-968, 2002.
-
(2002)
Genome Research
, vol.12
, Issue.6
, pp. 962-968
-
-
Jordan, I.K.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
19
-
-
84867613437
-
Iteration method for predicting essential proteins based on orthology and proteinprotein interaction networks
-
W. Peng, J. Wang, W. Wang, Q. Liu, F.-X. Wu, and Y. Pan, "Iteration method for predicting essential proteins based on orthology and proteinprotein interaction networks," BMC systems biology, vol. 6, no. 1, p. 87, 2012.
-
(2012)
BMC Systems Biology
, vol.6
, Issue.1
, pp. 87
-
-
Peng, W.1
Wang, J.2
Wang, W.3
Liu, Q.4
Wu, F.-X.5
Pan, Y.6
-
20
-
-
79951573994
-
Investigating the predictability of essential genes across distantly related organisms using an integrative approach
-
J. Deng, L. Deng, S. Su, M. Zhang, X. Lin, L. Wei, A. A. Minai, D. J. Hassett, and L. J. Lu, "Investigating the predictability of essential genes across distantly related organisms using an integrative approach," Nucleic acids research, vol. 39, no. 3, pp. 795-807, 2011.
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.3
, pp. 795-807
-
-
Deng, J.1
Deng, L.2
Su, S.3
Zhang, M.4
Lin, X.5
Wei, L.6
Minai, A.A.7
Hassett, D.J.8
Lu, L.J.9
-
21
-
-
33750488443
-
Towards the identification of essential genes using targeted genome sequencing and comparative analysis
-
A. Gustafson, E. Snitkin, S. Parker, C. DeLisi, and S. Kasif, "Towards the identification of essential genes using targeted genome sequencing and comparative analysis," Bmc Genomics, vol. 7, no. 1, p. 265, 2006.
-
(2006)
Bmc Genomics
, vol.7
, Issue.1
, pp. 265
-
-
Gustafson, A.1
Snitkin, E.2
Parker, S.3
Delisi, C.4
Kasif, S.5
-
22
-
-
70449369491
-
Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information
-
M. L. Acencio and N. Lemke, "Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information," BMC bioinformatics, vol. 10, no. 1, p. 290, 2009.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.1
, pp. 290
-
-
Acencio, M.L.1
Lemke, N.2
-
23
-
-
72949094885
-
Predicting essential genes based on network and sequence analysis
-
Y.-C. Hwang, C.-C. Lin, J.-Y. Chang, H. Mori, H.-F. Juan, and H.- C. Huang, "Predicting essential genes based on network and sequence analysis," Molecular BioSystems, vol. 5, no. 12, pp. 1672-1678, 2009.
-
(2009)
Molecular BioSystems
, vol.5
, Issue.12
, pp. 1672-1678
-
-
Hwang, Y.-C.1
Lin, C.-C.2
Chang, J.-Y.3
Mori, H.4
Juan, H.-F.5
Huang, H.-C.6
-
24
-
-
84872707941
-
Computational approaches to predicting essential proteins: A survey
-
J. Wang, W. Peng, and F.-X. Wu, "Computational approaches to predicting essential proteins: A survey," PROTEOMICS-Clinical Applications, vol. 7, no. 1-2, pp. 181-192, 2013.
-
(2013)
PROTEOMICS-Clinical Applications
, vol.7
, Issue.1-2
, pp. 181-192
-
-
Wang, J.1
Peng, W.2
Wu, F.-X.3
-
25
-
-
0029006062
-
The multiplicity of domains in proteins
-
R. F. Doolittle, "The multiplicity of domains in proteins," Annual review of biochemistry, vol. 64, no. 1, pp. 287-314, 1995.
-
(1995)
Annual Review of Biochemistry
, vol.64
, Issue.1
, pp. 287-314
-
-
Doolittle, R.F.1
-
27
-
-
0031813130
-
Pfam: Multiple sequence alignments and hmm-profiles of protein domains
-
E. L. Sonnhammer, S. R. Eddy, E. Birney, A. Bateman, and R. Durbin, "Pfam: multiple sequence alignments and hmm-profiles of protein domains," Nucleic acids research, vol. 26, no. 1, pp. 320-322, 1998.
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.1
, pp. 320-322
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
Durbin, R.5
-
28
-
-
75549090603
-
The pfam protein families database
-
R. D. Finn, J. Mistry, J. Tate, P. Coggill, A. Heger, J. E. Pollington, O. L. Gavin, P. Gunasekaran, G. Ceric, K. Forslund et al., "The pfam protein families database," Nucleic acids research, vol. 38, no. suppl 1, pp. D211-D222, 2010.
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.SUPPL. 1
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
-
29
-
-
75549087533
-
Prosite, a protein domain database for functional characterization and annotation
-
C. J. Sigrist, L. Cerutti, E. De Castro, P. S. Langendijk-Genevaux, V. Bulliard, A. Bairoch, and N. Hulo, "Prosite, a protein domain database for functional characterization and annotation," Nucleic acids research, vol. 38, no. suppl 1, pp. D161-D166, 2010.
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.SUPPL. 1
-
-
Sigrist, C.J.1
Cerutti, L.2
De Castro, E.3
Langendijk-Genevaux, P.S.4
Bulliard, V.5
Bairoch, A.6
Hulo, N.7
-
30
-
-
78651285748
-
Cdd: A conserved domain database for the functional annotation of proteins
-
A. Marchler-Bauer, S. Lu, J. B. Anderson, F. Chitsaz, M. K. Derbyshire, C. DeWeese-Scott, J. H. Fong, L. Y. Geer, R. C. Geer, N. R. Gonzales et al., "Cdd: a conserved domain database for the functional annotation of proteins," Nucleic acids research, vol. 39, no. suppl 1, pp. D225- D229, 2011.
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.SUPPL. 1
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
Deweese-Scott, C.6
Fong, J.H.7
Geer, L.Y.8
Geer, R.C.9
Gonzales, N.R.10
-
31
-
-
14544283040
-
An exponential core in the heart of the yeast protein interaction network
-
J. B. Pereira-Leal, B. Audit, J. M. Peregrin-Alvarez, and C. A. Ouzounis, "An exponential core in the heart of the yeast protein interaction network," Molecular biology and evolution, vol. 22, no. 3, pp. 421-425, 2005.
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.3
, pp. 421-425
-
-
Pereira-Leal, J.B.1
Audit, B.2
Peregrin-Alvarez, J.M.3
Ouzounis, C.A.4
-
32
-
-
33745712594
-
Why do hubs tend to be essential in protein networks?
-
X. He and J. Zhang, "Why do hubs tend to be essential in protein networks?" PLoS genetics, vol. 2, no. 6, p. e88, 2006.
-
(2006)
PLoS Genetics
, vol.2
, Issue.6
-
-
He, X.1
Zhang, J.2
-
33
-
-
0036088133
-
Dip, the database of interacting proteins: A research tool for studying cellular networks of protein interactions
-
I. Xenarios, L. Salwinski, X. J. Duan, P. Higney, S.-M. Kim, and D. Eisenberg, "Dip, the database of interacting proteins: a research tool for studying cellular networks of protein interactions," Nucleic acids research, vol. 30, no. 1, pp. 303-305, 2002.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 303-305
-
-
Xenarios, I.1
Salwinski, L.2
Duan, X.J.3
Higney, P.4
Kim, S.-M.5
Eisenberg, D.6
-
34
-
-
33644875537
-
Mips: Analysis and annotation of proteins from whole genomes in 2005
-
H.-W. Mewes, D. Frishman, K. F. Mayer, M. Münsterkötter, O. Noubibou, P. Pagel, T. Rattei, M. Oesterheld, A. Ruepp, and V. Stümpflen, "Mips: analysis and annotation of proteins from whole genomes in 2005," Nucleic acids research, vol. 34, no. suppl 1, pp. D169-D172, 2006.
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.SUPPL. 1
-
-
Mewes, H.-W.1
Frishman, D.2
Mayer, K.F.3
Münsterkötter, M.4
Noubibou, O.5
Pagel, P.6
Rattei, T.7
Oesterheld, M.8
Ruepp, A.9
Stümpflen, V.10
-
35
-
-
0031858914
-
Sgd: Saccharomyces genome database
-
J. M. Cherry, C. Adler, C. Ball, S. A. Chervitz, S. S. Dwight, E. T. Hester, Y. Jia, G. Juvik, T. Roe, M. Schroeder et al., "Sgd: Saccharomyces genome database," Nucleic acids research, vol. 26, no. 1, pp. 73-79, 1998.
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.1
, pp. 73-79
-
-
Cherry, J.M.1
Adler, C.2
Ball, C.3
Chervitz, S.A.4
Dwight, S.S.5
Hester, E.T.6
Jia, Y.7
Juvik, G.8
Roe, T.9
Schroeder, M.10
-
36
-
-
58149197597
-
Deg 5.0, a database of essential genes in both prokaryotes and eukaryotes
-
R. Zhang and Y. Lin, "Deg 5.0, a database of essential genes in both prokaryotes and eukaryotes," Nucleic acids research, vol. 37, no. suppl 1, pp. D455-D458, 2009.
-
(2009)
Nucleic Acids Research
, vol.37
, Issue.SUPPL. 1
-
-
Zhang, R.1
Lin, Y.2
-
37
-
-
33749075731
-
In silico prediction of yeast deletion phenotypes
-
S. Saha, S. Heber et al., "In silico prediction of yeast deletion phenotypes," Genet Mol Res, vol. 5, no. 1, pp. 224-232, 2006.
-
(2006)
Genet Mol Res
, vol.5
, Issue.1
, pp. 224-232
-
-
Saha, S.1
Heber, S.2
-
38
-
-
84876925278
-
The role of protein interactions in mediating essentiality and synthetic lethality
-
D. Talavera, D. L. Robertson, and S. C. Lovell, "The role of protein interactions in mediating essentiality and synthetic lethality," PloS one, vol. 8, no. 4, p. e62866, 2013.
-
(2013)
PloS One
, vol.8
, Issue.4
-
-
Talavera, D.1
Robertson, D.L.2
Lovell, S.C.3
-
39
-
-
50949092459
-
Why do hubs in the yeast protein interaction network tend to be essential: Reexamining the connection between the network topology and essentiality
-
E. Zotenko, J. Mestre, D. P. O'Leary, and T. M. Przytycka, "Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality," PLoS computational biology, vol. 4, no. 8, p. e1000140, 2008.
-
(2008)
PLoS Computational Biology
, vol.4
, Issue.8
-
-
Zotenko, E.1
Mestre, J.2
O'Leary, D.P.3
Przytycka, T.M.4
|