A systems biology tour de force for a near-minimal bacterium

Molecular Systems Biology

Volumn 5, Issue , 2009, Pages

  Glass, John I ^a   Hutchison Iii, Clyde A ^a   Smith, Hamilton O ^a   Venter, J Craig ^a  

^a J CRAIG VENTER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; BACTERIAL RNA;

BACILLUS SUBTILIS; BACTERIAL CELL; BACTERIAL GENOME; BACTERIOLOGY; BACTERIUM; DNA SEQUENCE; ESCHERICHIA COLI; GENE SEQUENCE; GENETIC TRANSCRIPTION; MYCOPLASMA GENITALIUM; MYCOPLASMA PNEUMONIAE; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SHORT SURVEY; GENE EXPRESSION REGULATION; NOTE; SYSTEMS BIOLOGY;

BACTERIA (MICROORGANISMS);

GENE EXPRESSION REGULATION, BACTERIAL; SYSTEMS BIOLOGY;

EID: 71449100299     PISSN: 17444292     EISSN: 17444292     Source Type: Journal    
DOI: 10.1038/msb.2009.89     Document Type: Short Survey

References (16)

1. Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, Fleischmann RD, Bult CJ, Kerlavage AR, Sutton G, Kelley JM, Fritchman RD, Weidman JF, Small KV, Sandusky M, Fuhrmann J, Nguyen D, Utterback TR, Saudek DM, Phillips CA, Merrick JM, et al (1995) The minimal gene complement of Mycoplasma genitalium. Science 270: 397-403
2. Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dumpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Schelder M, Schirle M, Remor M et al (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440: 631-636
3. Gibson DG, Benders GA, Andrews-Pfannkoch C, Denisova EA, Baden-Tillson H, Zaveri J, Stockwell TB, Brownley A, Thomas DW, Algire MA, Merryman C, Young L, Noskov VN, Glass JI, Venter JC, Hutchison III CA, Smith HO (2008) Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. Science 319: 1215-1220
4. Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison III CA, Smith HO, Venter JC (2006) Essential genes of a minimal bacterium. Proc Natl Acad Sci USA 103: 425-430
5. Gü ell M, van Noort V, Yus E, Chen WH, Leigh-Bell J, Michalodimitrakis K, Yamada T, Arumugam M, Doerks T, Kühner S, Rode M, Suyama M, Schmidt S, Gavin AC, Bork P, Serrano L (2009) Transcriptome complexity in a genome-reduced bacterium. Science 326: 1268
6. Himmelreich R, Hilbert H, Plagens H, Pirkl E, Li BC, Herrmann R (1996) Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res 24: 4420-4449 (Pubitemid 26388629)
7. Hutchison CA, Peterson SN, Gill SR, Cline RT, White O, Fraser CM, Smith HO, Venter JC (1999) Global transposon mutagenesis and a minimal Mycoplasma genome. Science 286: 2165-2169
8. Jaffe JD, Stange-Thomann N, Smith C, DeCaprio D, Fisher S, Butler J, Calvo S, Elkins T, FitzGerald MG, Hafez N, Kodira CD, Major J, Wang S, Wilkinson J, Nicol R, Nusbaum C, Birren B, Berg HC, Church GM (2004) The complete genome and proteome of Mycoplasma mobile. Genome Res 14: 1447-1461
9. Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrin-Alvarez JM, Shales M, Zhang X, DaveyM, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B et al (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440: 637-643
10. Kühner S, van Noort V, Betts MJ, Leo-Macias A, Batisse C, Rode M, Yamada T, Maier T, Bader S, Beltran-Alvarez P, Castaño-Diez D, Chen WH, Devos D, Gü ell M, Norambuena T, Racke I, Rybin V, Schmidt A, Yus E, Aebersold R et al (2009) Proteome organization in a genome-reduced bacterium. Science 326: 1235
11. Lartigue C, Glass JI, Alperovich N, Pieper R, Parmar PP, Hutchison III CA, Smith HO, Venter JC (2007) Genome transplantation in bacteria: changing one species to another. Science 317: 632-638
12. Lartigue C, Vashee S, Algire MA, Chuang RY, Benders GA, Ma L, Noskov VN, Denisova EA, Gibson DG, Assad-Garcia N, Alperovich N, Thomas DW, Merryman C, Hutchison III CA, Smith HO, Venter JC, Glass JI (2009) Creating bacterial strains from genomes that have been cloned and engineered in yeast. Science 325: 1693-1696
13. Tarassov K, Messier V, Landry CR, Radinovic S, Serna Molina MM, Shames I, Malitskaya Y, Vogel J, Bussey H, Michnick SW (2008) An in vivo map of the yeast protein interactome. Science 320: 1465-1470
14. Ueberle B, Frank R, Herrmann R (2002) The proteome of the bacterium Mycoplasma pneumoniae: comparing predicted open reading frames to identified gene products. Proteomics 2: 754-764
15. Wasinger VC, Pollack JD, Humphery-Smith I (2000) The proteome of Mycoplasma genitalium. Chaps-soluble component. Eur J Biochem 267: 1571-1582
16. Yus E, Maier T, Michalodimitrakis K, van Noort V, Yamada T, Chen WH, Wodke JAH, Gü ell M, Mart?̀nez S, Bourgeois R, Kühner S, Raineri E, Letunic I, Kalinina OV, Rode M, Herrmann R, Gutiérrez- Gallego R, Russell RB, Gavin AC, Bork P et al. (2009) Impact of genome reduction on bacterial metabolism and its regulation. Science 326: 1263