Sequence comparative analysis using networks: Software for evaluating de novo transcript assembly from next-generation sequencing

Molecular Biology and Evolution

Volumn 30, Issue 8, 2013, Pages 1975-1986

  Misner, Ian ^a   Bicep, Cédric ^b   Lopez, Philippe ^b   Halary, Sébastien ^c   Bapteste, Eric ^b   Lane, Christopher E ^a  

^a UNIVERSITY OF RHODE ISLAND   (United States)

^b UMR CNRS 7138 Systématique Adaptation Evolution Université Pierre et Marie Curie ^*  (France)

^c UNIVERSITÉ DE MONTRÉAL   (Canada)

Author keywords

Comparative genomics; De novo assembly; Network; Next generation sequencing; Oomycete; Transcriptome

Indexed keywords

TRANSCRIPTOME;

ACCURACY; ACHLYA HYPOGYNA; ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; GENETIC ALGORITHM; GENOME; NONHUMAN; OOMYCETES; SEQUENCE ANALYSIS; SEQUENCE COMPARATIVE ANALYSIS USING NETWORKS; STATISTICAL ANALYSIS; BIOLOGY; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORK; GENOMICS; HIGH THROUGHPUT SEQUENCING; PROCEDURES; COMPARATIVE GENOMICS; DE NOVO ASSEMBLY; METHODOLOGY; NETWORK; NEXT-GENERATION SEQUENCING;

COMPUTATIONAL BIOLOGY; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORKS; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; SOFTWARE; TRANSCRIPTOME;

COMPARATIVE GENOMICS; DE NOVO ASSEMBLY; NETWORK; NEXT-GENERATION SEQUENCING; OOMYCETE; TRANSCRIPTOME;

EID: 84894362752     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst087     Document Type: Article

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