-
1
-
-
17444430392
-
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
doi: 10.1016/j.cell.2005.04.004
-
Allen, E., Xie, Z., Gustafson, A. M., and Carrington, J. C. (2005). microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121, 207-221. doi: 10.1016/j.cell.2005.04.004
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
2
-
-
84869825304
-
MicroRNA159 can act as a switch or tuning microRNA independently of its abundance in Arabidopsis
-
doi: 10.1371/journal.pone.0034751
-
Alonso-Peral, M. M., Sun, C., and Millar, A. A. (2012). MicroRNA159 can act as a switch or tuning microRNA independently of its abundance in Arabidopsis. PLoS ONE 7:e34751. doi: 10.1371/journal.pone.0034751
-
(2012)
PLoS ONE
, vol.7
-
-
Alonso-Peral, M.M.1
Sun, C.2
Millar, A.A.3
-
3
-
-
34547668337
-
Common functions for diverse small RNAs of land plants
-
doi: 10.1105/tpc.107.051706
-
Axtell, M. J., Snyder, J. A., and Bartel, D. P. (2007). Common functions for diverse small RNAs of land plants. Plant Cell 19, 1750-1769. doi: 10.1105/tpc.107.051706
-
(2007)
Plant Cell
, vol.19
, pp. 1750-1769
-
-
Axtell, M.J.1
Snyder, J.A.2
Bartel, D.P.3
-
4
-
-
38549110664
-
Update of ASRP: The Arabidopsis small RNA project database
-
doi: 10.1093/nar/gkm997
-
Backman, T. W., Sullivan, C. M., Cumbie, J. S., Miller, Z. A., Chapman, E. J., Fahlgren, N., et al. (2008). Update of ASRP: the Arabidopsis small RNA project database. Nucleic Acids Res. 36, D982-D985. doi: 10.1093/nar/gkm997
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Backman, T.W.1
Sullivan, C.M.2
Cumbie, J.S.3
Miller, Z.A.4
Chapman, E.J.5
Fahlgren, N.6
-
5
-
-
34548190012
-
A central integrator of transcription networks in plant stress and energy signalling
-
doi: 10.1038/nature06069
-
Baena-Gonzalez, E., Rolland, F., Thevelein, J. M., and Sheen, J. (2007). A central integrator of transcription networks in plant stress and energy signalling. Nature 448, 938-942. doi: 10.1038/nature06069
-
(2007)
Nature
, vol.448
, pp. 938-942
-
-
Baena-Gonzalez, E.1
Rolland, F.2
Thevelein, J.M.3
Sheen, J.4
-
6
-
-
50349090461
-
Convergent energy and stress signaling
-
doi: 10.1016/j.tplants.2008.06.006
-
Baena-Gonzalez, E., and Sheen, J. (2008). Convergent energy and stress signaling. Trends Plant Sci. 13, 474-482. doi: 10.1016/j.tplants.2008.06.006
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 474-482
-
-
Baena-Gonzalez, E.1
Sheen, J.2
-
7
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
doi: 10.1016/j.cell.2009.01.002
-
Bartel, D. P. (2009). MicroRNAs: target recognition and regulatory functions. Cell 136, 215-233. doi: 10.1016/j.cell.2009.01.002
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
8
-
-
33744973775
-
Relief of microRNA-mediated translational repression in human cells subjected to stress
-
doi: 10.1016/j.cell.2006.04.031
-
Bhattacharyya, S. N., Habermacher, R., Martine, U., Closs, E. I., and Filipowicz, W. (2006). Relief of microRNA-mediated translational repression in human cells subjected to stress. Cell 125, 1111-1124. doi: 10.1016/j.cell.2006.04.031
-
(2006)
Cell
, vol.125
, pp. 1111-1124
-
-
Bhattacharyya, S.N.1
Habermacher, R.2
Martine, U.3
Closs, E.I.4
Filipowicz, W.5
-
9
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
doi: 10.1126/science.1159151
-
Brodersen, P., Sakvarelidze-Achard, L., Bruun-Rasmussen, M., Dunoyer, P., Yamamoto, Y. Y., Sieburth, L., et al. (2008). Widespread translational inhibition by plant miRNAs and siRNAs. Science 320, 1185-1190. doi: 10.1126/science.1159151
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
-
10
-
-
84857136721
-
Isoprenoid biosynthesis is required for miRNA function and affects membrane association of ARGONAUTE 1 in Arabidopsis
-
doi: 10.1073/pnas.1112500109
-
Brodersen, P., Sakvarelidze-Achard, L., Schaller, H., Khafif, M., Schott, G., Bendahmane, A., et al. (2012). Isoprenoid biosynthesis is required for miRNA function and affects membrane association of ARGONAUTE 1 in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 109, 1778-1783. doi: 10.1073/pnas.1112500109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 1778-1783
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Schaller, H.3
Khafif, M.4
Schott, G.5
Bendahmane, A.6
-
11
-
-
60549111213
-
PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups
-
doi: 10.1186/1471-2164-9-561
-
Chang, W. C., Lee, T. Y., Huang, H. D., Huang, H. Y., and Pan, R. L. (2008). PlantPAN: plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups. BMC Genomics 9:561. doi: 10.1186/1471-2164-9-561
-
(2008)
BMC Genomics
, vol.9
, pp. 561
-
-
Chang, W.C.1
Lee, T.Y.2
Huang, H.D.3
Huang, H.Y.4
Pan, R.L.5
-
12
-
-
84874284215
-
Changes in mRNA stability associated with cold stress in Arabidopsis cells
-
doi: 10.1093/pcp/pcs164
-
Chiba, Y., Mineta, K., Hirai, M. Y., Suzuki, Y., Kanaya, S., Takahashi, H., et al. (2013). Changes in mRNA stability associated with cold stress in Arabidopsis cells. Plant Cell Physiol. 54, 180-194. doi: 10.1093/pcp/pcs164
-
(2013)
Plant Cell Physiol.
, vol.54
, pp. 180-194
-
-
Chiba, Y.1
Mineta, K.2
Hirai, M.Y.3
Suzuki, Y.4
Kanaya, S.5
Takahashi, H.6
-
13
-
-
79959967431
-
psRNATarget: A plant small RNA target analysis server
-
doi: 10.1093/nar/gkr319
-
Dai, X., and Zhao, P. X. (2011). psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res. 39, W155-W159. doi: 10.1093/nar/gkr319
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Dai, X.1
Zhao, P.X.2
-
14
-
-
44749093486
-
Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases
-
doi: 10.1007/s11103-008-9329-1
-
Dugas, D. V., and Bartel, B. (2008). Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases. Plant Mol. Biol. 67, 403-417. doi: 10.1007/s11103-008-9329-1
-
(2008)
Plant Mol. Biol.
, vol.67
, pp. 403-417
-
-
Dugas, D.V.1
Bartel, B.2
-
15
-
-
79551629737
-
An endogenous F-box protein regulates ARGONAUTE1 in Arabidopsis thaliana
-
doi: 10.1186/1758-907X-1-15
-
Earley, K., Smith, M., Weber, R., Gregory, B., and Poethig, R. (2010). An endogenous F-box protein regulates ARGONAUTE1 in Arabidopsis thaliana. Silence 1, 15. doi: 10.1186/1758-907X-1-15
-
(2010)
Silence
, vol.1
, pp. 15
-
-
Earley, K.1
Smith, M.2
Weber, R.3
Gregory, B.4
Poethig, R.5
-
16
-
-
80055092838
-
Binding of the cyclophilin 40 ortholog SQUINT to Hsp90 protein is required for SQUINT function in Arabidopsis
-
doi: 10.1074/jbc.M111.290130
-
Earley, K. W., and Poethig, R. S. (2011). Binding of the cyclophilin 40 ortholog SQUINT to Hsp90 protein is required for SQUINT function in Arabidopsis. J. Biol. Chem. 286, 38184-38189. doi: 10.1074/jbc.M111.290130
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 38184-38189
-
-
Earley, K.W.1
Poethig, R.S.2
-
17
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes
-
doi: 10.1371/journal.pone.0000219
-
Fahlgren, N., Howell, M. D., Kasschau, K. D., Chapman, E. J., Sullivan, C. M., Cumbie, J. S., et al. (2007). High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS ONE 2:e219. doi: 10.1371/journal.pone.0000219
-
(2007)
PLoS ONE
, vol.2
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
-
18
-
-
0003374598
-
T-DNA insertion mutagenesis in Arabidopsis: Seed infection/transformation
-
in, eds N.-H. Chua, C. Koncz, and J. Schell (Singapore: World Scientific)
-
Feldmann, K. A. (1992). "T-DNA insertion mutagenesis in Arabidopsis: seed infection/transformation, " in Methods in Arabidopsis Research, eds N.-H. Chua, C. Koncz, and J. Schell (Singapore: World Scientific), 274-289.
-
(1992)
Methods in Arabidopsis Research
, pp. 274-289
-
-
Feldmann, K.A.1
-
19
-
-
84864459173
-
PAREsnip: A tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing
-
doi: 10.1093/nar/gks277
-
Folkes, L., Moxon, S., Woolfenden, H. C., Stocks, M. B., Szittya, G., Dalmay, T., et al. (2012). PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Res. 40:e103. doi: 10.1093/nar/gks277
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Folkes, L.1
Moxon, S.2
Woolfenden, H.C.3
Stocks, M.B.4
Szittya, G.5
Dalmay, T.6
-
20
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
doi: 10.1038/ng2079
-
Franco-Zorrilla, J. M., Valli, A., Todesco, M., Mateos, I., Puga, M. I., Rubio-Somoza, I., et al. (2007). Target mimicry provides a new mechanism for regulation of microRNA activity. Nat. Genet. 39, 1033-1037. doi: 10.1038/ng2079
-
(2007)
Nat. Genet.
, vol.39
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
Valli, A.2
Todesco, M.3
Mateos, I.4
Puga, M.I.5
Rubio-Somoza, I.6
-
21
-
-
49449118943
-
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
-
doi: 10.1038/nbt1417
-
German, M. A., Pillay, M., Jeong, D. H., Hetawal, A., Luo, S., Janardhanan, P., et al. (2008). Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat. Biotechnol. 26, 941-946. doi: 10.1038/nbt1417
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 941-946
-
-
German, M.A.1
Pillay, M.2
Jeong, D.H.3
Hetawal, A.4
Luo, S.5
Janardhanan, P.6
-
22
-
-
79551633211
-
TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana
-
doi: 10.1105/tpc.110.074518
-
Giraud, E., Ng, S., Carrie, C., Duncan, O., Low, J., Lee, C. P., et al. (2010). TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana. Plant Cell 22, 3921-3934. doi: 10.1105/tpc.110.074518
-
(2010)
Plant Cell
, vol.22
, pp. 3921-3934
-
-
Giraud, E.1
Ng, S.2
Carrie, C.3
Duncan, O.4
Low, J.5
Lee, C.P.6
-
23
-
-
0037239022
-
Metabolic signalling and carbon partitioning: Role of Snf1-related (SnRK1) protein kinase
-
doi: 10.1093/jxb/erg038
-
Halford, N. G., Hey, S., Jhurreea, D., Laurie, S., McKibbin, R. S., Paul, M., et al. (2003). Metabolic signalling and carbon partitioning: role of Snf1-related (SnRK1) protein kinase. J. Exp. Bot. 54, 467-475. doi: 10.1093/jxb/erg038
-
(2003)
J. Exp. Bot.
, vol.54
, pp. 467-475
-
-
Halford, N.G.1
Hey, S.2
Jhurreea, D.3
Laurie, S.4
McKibbin, R.S.5
Paul, M.6
-
24
-
-
58149097010
-
Posttranscriptional crossregulation between Drosha and DGCR8
-
doi: 10.1016/j.cell.2008.10.053
-
Han, J., Pedersen, J. S., Kwon, S. C., Belair, C. D., Kim, Y. K., Yeom, K. H., et al. (2009). Posttranscriptional crossregulation between Drosha and DGCR8. Cell 136, 75-84. doi: 10.1016/j.cell.2008.10.053
-
(2009)
Cell
, vol.136
, pp. 75-84
-
-
Han, J.1
Pedersen, J.S.2
Kwon, S.C.3
Belair, C.D.4
Kim, Y.K.5
Yeom, K.H.6
-
25
-
-
40549087313
-
The sucrose regulated transcription factor bZIP11 affects amino acid metabolism by regulating the expression of ASPARAGINE SYNTHETASE1 and PROLINE DEHYDROGENASE2
-
doi: 10.1111/j.1365-313X.2007.03385.x
-
Hanson, J., Hanssen, M., Wiese, A., Hendriks, M. M., and Smeekens, S. (2008). The sucrose regulated transcription factor bZIP11 affects amino acid metabolism by regulating the expression of ASPARAGINE SYNTHETASE1 and PROLINE DEHYDROGENASE2. Plant J. 53, 935-949. doi: 10.1111/j.1365-313X.2007.03385.x
-
(2008)
Plant J.
, vol.53
, pp. 935-949
-
-
Hanson, J.1
Hanssen, M.2
Wiese, A.3
Hendriks, M.M.4
Smeekens, S.5
-
26
-
-
0037392696
-
Geminivirus AL2 and L2 proteins interact with and inactivate SNF1 kinase
-
doi: 10.1105/tpc.009530
-
Hao, L., Wang, H., Sunter, G., and Bisaro, D. M. (2003). Geminivirus AL2 and L2 proteins interact with and inactivate SNF1 kinase. Plant Cell 15, 1034-1048. doi: 10.1105/tpc.009530
-
(2003)
Plant Cell
, vol.15
, pp. 1034-1048
-
-
Hao, L.1
Wang, H.2
Sunter, G.3
Bisaro, D.M.4
-
27
-
-
34648828532
-
AMP-activated/SNF1 protein kinases: Conserved guardians of cellular energy
-
doi: 10.1038/nrm2249
-
Hardie, D. G. (2007). AMP-activated/SNF1 protein kinases: conserved guardians of cellular energy. Nat. Rev. Mol. Cell Biol. 8, 774-785. doi: 10.1038/nrm2249
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 774-785
-
-
Hardie, D.G.1
-
28
-
-
38449110592
-
SNF1/AMPK pathways in yeast
-
doi: 10.2741/2854
-
Hedbacker, K., and Carlson, M. (2008). SNF1/AMPK pathways in yeast. Front. Biosci. 13, 2408-2420. doi: 10.2741/2854
-
(2008)
Front. Biosci.
, vol.13
, pp. 2408-2420
-
-
Hedbacker, K.1
Carlson, M.2
-
29
-
-
57149108258
-
Arabidopsis small RNAs and their targets during cyst nematode parasitism
-
doi: 10.1094/MPMI-21-12-1622
-
Hewezi, T., Howe, P., Maier, T. R., and Baum, T. J. (2008). Arabidopsis small RNAs and their targets during cyst nematode parasitism. Mol. Plant Microbe Interact. 21, 1622-1634. doi: 10.1094/MPMI-21-12-1622
-
(2008)
Mol. Plant Microbe Interact.
, vol.21
, pp. 1622-1634
-
-
Hewezi, T.1
Howe, P.2
Maier, T.R.3
Baum, T.J.4
-
30
-
-
71049136041
-
Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
-
doi: 10.1104/pp.109.147280
-
Hsieh, L. C., Lin, S. I., Shih, A. C., Chen, J. W., Lin, W. Y., Tseng, C. Y., et al. (2009). Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Plant Physiol. 151, 2120-2132. doi: 10.1104/pp.109.147280
-
(2009)
Plant Physiol.
, vol.151
, pp. 2120-2132
-
-
Hsieh, L.C.1
Lin, S.I.2
Shih, A.C.3
Chen, J.W.4
Lin, W.Y.5
Tseng, C.Y.6
-
31
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
doi: 10.1038/nprot.2008.211
-
Huang Da, W., Sherman, B. T., and Lempicki, R. A. (2009). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4, 44-57. doi: 10.1038/nprot.2008.211
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
32
-
-
0033385170
-
Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems
-
Jacobsen, S. E., Running, M. P., and Meyerowitz, E. M. (1999). Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems. Development 126, 5231-5243.
-
(1999)
Development
, vol.126
, pp. 5231-5243
-
-
Jacobsen, S.E.1
Running, M.P.2
Meyerowitz, E.M.3
-
33
-
-
84874315109
-
MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis
-
doi: 10.1007/s11103-013-0015-6
-
Jia, F., and Rock, C. D. (2013). MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis. Plant Mol. Biol. 81, 447-460. doi: 10.1007/s11103-013-0015-6
-
(2013)
Plant Mol. Biol.
, vol.81
, pp. 447-460
-
-
Jia, F.1
Rock, C.D.2
-
34
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
doi: 10.1016/j.molcel.2004.05.027
-
Jones-Rhoades, M. W., and Bartel, D. P. (2004). Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell 14, 787-799. doi: 10.1016/j.molcel.2004.05.027
-
(2004)
Mol. Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
35
-
-
33645525893
-
MicroRNAS and their regulatory roles in plants
-
doi: 10.1146/annurev.arplant.57.032905.105218
-
Jones-Rhoades, M. W., Bartel, D. P., and Bartel, B. (2006). MicroRNAS and their regulatory roles in plants. Annu. Rev. Plant Biol. 57, 19-53. doi: 10.1146/annurev.arplant.57.032905.105218
-
(2006)
Annu. Rev. Plant Biol.
, vol.57
, pp. 19-53
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
Bartel, B.3
-
36
-
-
84860871349
-
Arabidopsis RNA-binding protein FCA regulates microRNA172 processing in thermosensory flowering
-
doi: 10.1074/jbc.M111.337485
-
Jung, J. H., Seo, P. J., Ahn, J. H., and Park, C. M. (2012). Arabidopsis RNA-binding protein FCA regulates microRNA172 processing in thermosensory flowering. J. Biol. Chem. 287, 16007-16016. doi: 10.1074/jbc.M111.337485
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 16007-16016
-
-
Jung, J.H.1
Seo, P.J.2
Ahn, J.H.3
Park, C.M.4
-
37
-
-
79958203029
-
AtHsp70-15-deficient Arabidopsis plants are characterized by reduced growth, a constitutive cytosolic protein response and enhanced resistance to TuMV
-
doi: 10.1111/j.1365-313X.2011.04558.x
-
Jungkunz, I., Link, K., Vogel, F., Voll, L. M., Sonnewald, S., and Sonnewald, U. (2011). AtHsp70-15-deficient Arabidopsis plants are characterized by reduced growth, a constitutive cytosolic protein response and enhanced resistance to TuMV. Plant J. 66, 983-995. doi: 10.1111/j.1365-313X.2011.04558.x
-
(2011)
Plant J.
, vol.66
, pp. 983-995
-
-
Jungkunz, I.1
Link, K.2
Vogel, F.3
Voll, L.M.4
Sonnewald, S.5
Sonnewald, U.6
-
38
-
-
84856594225
-
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
-
doi: 10.1016/j.bbagrm.2011.05.001
-
Khraiwesh, B., Zhu, J. K., and Zhu, J. (2012). Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim. Biophys. Acta 1819, 137-148. doi: 10.1016/j.bbagrm.2011.05.001
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 137-148
-
-
Khraiwesh, B.1
Zhu, J.K.2
Zhu, J.3
-
39
-
-
1542377275
-
Spatially restricted microRNA directs leaf polarity through ARGONAUTE1
-
doi: 10.1038/nature02366
-
Kidner, C. A., and Martienssen, R. A. (2004). Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature 428, 81-84. doi: 10.1038/nature02366
-
(2004)
Nature
, vol.428
, pp. 81-84
-
-
Kidner, C.A.1
Martienssen, R.A.2
-
40
-
-
56449129474
-
Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs
-
doi: 10.1093/pcp/pcn146
-
Kim, S., Yang, J. Y., Xu, J., Jang, I. C., Prigge, M. J., and Chua, N. H. (2008). Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs. Plant Cell Physiol. 49, 1634-1644. doi: 10.1093/pcp/pcn146
-
(2008)
Plant Cell Physiol.
, vol.49
, pp. 1634-1644
-
-
Kim, S.1
Yang, J.Y.2
Xu, J.3
Jang, I.C.4
Prigge, M.J.5
Chua, N.H.6
-
41
-
-
84862879743
-
Drosha regulates neurogenesis by controlling neurogenin 2 expression independent of microRNAs
-
doi: 10.1038/nn.3139
-
Knuckles, P., Vogt, M. A., Lugert, S., Milo, M., Chong, M. M., Hautbergue, G. M., et al. (2012). Drosha regulates neurogenesis by controlling neurogenin 2 expression independent of microRNAs. Nat. Neurosci. 15, 962-969. doi: 10.1038/nn.3139
-
(2012)
Nat. Neurosci.
, vol.15
, pp. 962-969
-
-
Knuckles, P.1
Vogt, M.A.2
Lugert, S.3
Milo, M.4
Chong, M.M.5
Hautbergue, G.M.6
-
42
-
-
78651293534
-
miRBase: Integrating microRNA annotation and deep-sequencing data
-
doi: 10.1093/nar/gkq1027
-
Kozomara, A., and Griffiths-Jones, S. (2011). miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39, D152-D157. doi: 10.1093/nar/gkq1027
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
43
-
-
68949115601
-
Biochemical evidence for translational repression by Arabidopsis microRNAs
-
doi: 10.1105/tpc.108.063412
-
Lanet, E., Delannoy, E., Sormani, R., Floris, M., Brodersen, P., Crete, P., et al. (2009). Biochemical evidence for translational repression by Arabidopsis microRNAs. Plant Cell 21, 1762-1768. doi: 10.1105/tpc.108.063412
-
(2009)
Plant Cell
, vol.21
, pp. 1762-1768
-
-
Lanet, E.1
Delannoy, E.2
Sormani, R.3
Floris, M.4
Brodersen, P.5
Crete, P.6
-
44
-
-
78049308083
-
Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome
-
doi: 10.1073/pnas.1012891107
-
Laubinger, S., Zeller, G., Henz, S. R., Buechel, S., Sachsenberg, T., Wang, J. W., et al. (2010). Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proc. Natl. Acad. Sci. U.S.A. 107, 17466-17473. doi: 10.1073/pnas.1012891107
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 17466-17473
-
-
Laubinger, S.1
Zeller, G.2
Henz, S.R.3
Buechel, S.4
Sachsenberg, T.5
Wang, J.W.6
-
45
-
-
77449150559
-
Coordinated responses to oxygen and sugar deficiency allow rice seedlings to tolerate flooding
-
doi: 10.1126/scisignal.2000333
-
Lee, K. W., Chen, P. W., Lu, C. A., Chen, S., Ho, T. H., and Yu, S. M. (2009). Coordinated responses to oxygen and sugar deficiency allow rice seedlings to tolerate flooding. Sci. Signal. 2:ra61. doi: 10.1126/scisignal.2000333
-
(2009)
Sci. Signal.
, vol.2
-
-
Lee, K.W.1
Chen, P.W.2
Lu, C.A.3
Chen, S.4
Ho, T.H.5
Yu, S.M.6
-
46
-
-
17744413236
-
Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
-
RESEARCH0032. doi: 10.1186/gb-2001-2-8-research0032
-
Li, C., and Hung Wong, W. (2001). Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biol. 2:RESEARCH0032. doi: 10.1186/gb-2001-2-8-research0032
-
(2001)
Genome Biol.
, vol.2
-
-
Li, C.1
Hung Wong, W.2
-
47
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
doi: 10.1073/pnas.98.1.31
-
Li, C., and Wong, W. H. (2001). Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc. Natl. Acad. Sci. U.S.A. 98, 31-36. doi: 10.1073/pnas.98.1.31
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
48
-
-
84865596150
-
Autophagy: A multifaceted intracellular system for bulk and selective recycling
-
doi: 10.1016/j.tplants.2012.05.006
-
Li, F., and Vierstra, R. D. (2012). Autophagy: a multifaceted intracellular system for bulk and selective recycling. Trends Plant Sci. 17, 526-537. doi: 10.1016/j.tplants.2012.05.006
-
(2012)
Trends Plant Sci.
, vol.17
, pp. 526-537
-
-
Li, F.1
Vierstra, R.D.2
-
49
-
-
84863298341
-
Transcriptional regulation of Arabidopsis MIR168a and argonaute1 homeostasis in abscisic acid and abiotic stress responses
-
doi: 10.1104/pp.111.188789
-
Li, W., Cui, X., Meng, Z., Huang, X., Xie, Q., Wu, H., et al. (2012). Transcriptional regulation of Arabidopsis MIR168a and argonaute1 homeostasis in abscisic acid and abiotic stress responses. Plant Physiol. 158, 1279-1292. doi: 10.1104/pp.111.188789
-
(2012)
Plant Physiol.
, vol.158
, pp. 1279-1292
-
-
Li, W.1
Cui, X.2
Meng, Z.3
Huang, X.4
Xie, Q.5
Wu, H.6
-
50
-
-
57749110646
-
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance
-
doi: 10.1105/tpc.108.059444
-
Li, W. X., Oono, Y., Zhu, J., He, X. J., Wu, J. M., Iida, K., et al. (2008). The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell 20, 2238-2251. doi: 10.1105/tpc.108.059444
-
(2008)
Plant Cell
, vol.20
, pp. 2238-2251
-
-
Li, W.X.1
Oono, Y.2
Zhu, J.3
He, X.J.4
Wu, J.M.5
Iida, K.6
-
51
-
-
84869099388
-
Identification of nitrogen starvation-responsive microRNAs in Arabidopsis thaliana
-
doi: 10.1371/journal.pone.0048951
-
Liang, G., He, H., and Yu, D. (2012). Identification of nitrogen starvation-responsive microRNAs in Arabidopsis thaliana. PLoS ONE 7:e48951. doi: 10.1371/journal.pone.0048951
-
(2012)
PLoS ONE
, vol.7
-
-
Liang, G.1
He, H.2
Yu, D.3
-
52
-
-
79953067376
-
Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability
-
doi: 10.1111/j.1469-8137.2010.03451.x
-
Licausi, F., Weits, D. A., Pant, B. D., Scheible, W. R., Geigenberger, P., and Van Dongen, J. T. (2011). Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability. New Phytol. 190, 442-456. doi: 10.1111/j.1469-8137.2010.03451.x
-
(2011)
New Phytol.
, vol.190
, pp. 442-456
-
-
Licausi, F.1
Weits, D.A.2
Pant, B.D.3
Scheible, W.R.4
Geigenberger, P.5
Van Dongen, J.T.6
-
53
-
-
84859151759
-
Cotranscriptional role for Arabidopsis DICER-LIKE 4 in transcription termination
-
doi: 10.1126/science.1214402
-
Liu, F., Bakht, S., and Dean, C. (2012). Cotranscriptional role for Arabidopsis DICER-LIKE 4 in transcription termination. Science 335, 1621-1623. doi: 10.1126/science.1214402
-
(2012)
Science
, vol.335
, pp. 1621-1623
-
-
Liu, F.1
Bakht, S.2
Dean, C.3
-
54
-
-
42449109504
-
Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana
-
doi: 10.1261/rna.895308
-
Liu, H. H., Tian, X., Li, Y. J., Wu, C. A., and Zheng, C. C. (2008). Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 14, 836-843. doi: 10.1261/rna.895308
-
(2008)
RNA
, vol.14
, pp. 836-843
-
-
Liu, H.H.1
Tian, X.2
Li, Y.J.3
Wu, C.A.4
Zheng, C.C.5
-
55
-
-
84870377279
-
Analysis of microRNA expression profile induced by AICAR in mouse hepatocytes
-
doi: 10.1016/j.gene.2012.09.118
-
Liu, J., Liu, W., Ying, H., Zhao, W., and Zhang, H. (2013). Analysis of microRNA expression profile induced by AICAR in mouse hepatocytes. Gene 512, 364-372. doi: 10.1016/j.gene.2012.09.118
-
(2013)
Gene
, vol.512
, pp. 364-372
-
-
Liu, J.1
Liu, W.2
Ying, H.3
Zhao, W.4
Zhang, H.5
-
56
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta C(T) Method
-
doi: 10.1006/meth.2001.1262
-
Livak, K. J., and Schmittgen, T. D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta C(T) Method. Methods 25, 402-408. doi: 10.1006/meth.2001.1262
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
57
-
-
0037241192
-
Antisense repression of StubGAL83 affects root and tuber development in potato
-
doi: 10.1046/j.1365-313X.2003.016015.x
-
Lovas, A., Bimbo, A., Szabo, L., and Banfalvi, Z. (2003). Antisense repression of StubGAL83 affects root and tuber development in potato. Plant J. 33, 139-147. doi: 10.1046/j.1365-313X.2003.016015.x
-
(2003)
Plant J.
, vol.33
, pp. 139-147
-
-
Lovas, A.1
Bimbo, A.2
Szabo, L.3
Banfalvi, Z.4
-
58
-
-
0034485822
-
A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin
-
Lu, C., and Fedoroff, N. (2000). A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin. Plant Cell 12, 2351-2366.
-
(2000)
Plant Cell
, vol.12
, pp. 2351-2366
-
-
Lu, C.1
Fedoroff, N.2
-
59
-
-
77952884377
-
Profiling of cold-stress-responsive miRNAs in rice by microarrays
-
doi: 10.1016/j.gene.2010.03.011
-
Lv, D. K., Bai, X., Li, Y., Ding, X. D., Ge, Y., Cai, H., et al. (2010). Profiling of cold-stress-responsive miRNAs in rice by microarrays. Gene 459, 39-47. doi: 10.1016/j.gene.2010.03.011
-
(2010)
Gene
, vol.459
, pp. 39-47
-
-
Lv, D.K.1
Bai, X.2
Li, Y.3
Ding, X.D.4
Ge, Y.5
Cai, H.6
-
60
-
-
46149102667
-
MicroRNA-directed regulation: To cleave or not to cleave
-
doi: 10.1016/j.tplants.2008.03.007
-
Mallory, A. C., and Bouche, N. (2008). MicroRNA-directed regulation: to cleave or not to cleave. Trends Plant Sci. 13, 359-367. doi: 10.1016/j.tplants.2008.03.007
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 359-367
-
-
Mallory, A.C.1
Bouche, N.2
-
61
-
-
38449083934
-
AMPK and transcriptional regulation
-
doi: 10.2741/2907
-
McGee, S. L., and Hargreaves, M. (2008). AMPK and transcriptional regulation. Front. Biosci. 13, 3022-3033. doi: 10.2741/2907
-
(2008)
Front. Biosci.
, vol.13
, pp. 3022-3033
-
-
McGee, S.L.1
Hargreaves, M.2
-
62
-
-
84868204370
-
The Snf1-related protein kinases SnRK2.4 and SnRK2.10 are involved in maintenance of root system architecture during salt stress
-
doi: 10.1111/j.1365-313X.2012.05089.x
-
McLoughlin, F., Galvan-Ampudia, C. S., Julkowska, M. M., Caarls, L., Van Der Does, D., Lauriere, C., et al. (2012). The Snf1-related protein kinases SnRK2.4 and SnRK2.10 are involved in maintenance of root system architecture during salt stress. Plant J. 72, 436-449. doi: 10.1111/j.1365-313X.2012.05089.x
-
(2012)
Plant J.
, vol.72
, pp. 436-449
-
-
McLoughlin, F.1
Galvan-Ampudia, C.S.2
Julkowska, M.M.3
Caarls, L.4
Van Der Does, D.5
Lauriere, C.6
-
63
-
-
77956584277
-
High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism
-
doi: 10.1093/jxb/erq209
-
Meng, Y., Gou, L., Chen, D., Wu, P., and Chen, M. (2010). High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism. J. Exp. Bot. 61, 3833-3837. doi: 10.1093/jxb/erq209
-
(2010)
J. Exp. Bot.
, vol.61
, pp. 3833-3837
-
-
Meng, Y.1
Gou, L.2
Chen, D.3
Wu, P.4
Chen, M.5
-
64
-
-
72049103210
-
Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
-
doi: 10.1093/jxb/erp296
-
Moldovan, D., Spriggs, A., Yang, J., Pogson, B. J., Dennis, E. S., and Wilson, I. W. (2010). Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis. J. Exp. Bot. 61, 165-177. doi: 10.1093/jxb/erp296
-
(2010)
J. Exp. Bot.
, vol.61
, pp. 165-177
-
-
Moldovan, D.1
Spriggs, A.2
Yang, J.3
Pogson, B.J.4
Dennis, E.S.5
Wilson, I.W.6
-
65
-
-
52949088691
-
A toolkit for analysing large-scale plant small RNA datasets
-
doi: 10.1093/bioinformatics/btn428
-
Moxon, S., Schwach, F., Dalmay, T., Maclean, D., Studholme, D. J., and Moulton, V. (2008). A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics 24, 2252-2253. doi: 10.1093/bioinformatics/btn428
-
(2008)
Bioinformatics
, vol.24
, pp. 2252-2253
-
-
Moxon, S.1
Schwach, F.2
Dalmay, T.3
McLean, D.4
Studholme, D.J.5
Moulton, V.6
-
66
-
-
33644876658
-
Plant MPSS databases: Signature-based transcriptional resources for analyses of mRNA and small RNA
-
doi: 10.1093/nar/gkj077
-
Nakano, M., Nobuta, K., Vemaraju, K., Tej, S. S., Skogen, J. W., and Meyers, B. C. (2006). Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. Nucleic Acids Res. 34, D731-D735. doi: 10.1093/nar/gkj077
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Nakano, M.1
Nobuta, K.2
Vemaraju, K.3
Tej, S.S.4
Skogen, J.W.5
Meyers, B.C.6
-
67
-
-
33645967758
-
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling
-
doi: 10.1126/science.1126088
-
Navarro, L., Dunoyer, P., Jay, F., Arnold, B., Dharmasiri, N., Estelle, M., et al. (2006). A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 312, 436-439. doi: 10.1126/science.1126088
-
(2006)
Science
, vol.312
, pp. 436-439
-
-
Navarro, L.1
Dunoyer, P.2
Jay, F.3
Arnold, B.4
Dharmasiri, N.5
Estelle, M.6
-
68
-
-
47949100595
-
Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing
-
doi: 10.1261/rna.1155108
-
Newman, M. A., Thomson, J. M., and Hammond, S. M. (2008). Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing. RNA 14, 1539-1549. doi: 10.1261/rna.1155108
-
(2008)
RNA
, vol.14
, pp. 1539-1549
-
-
Newman, M.A.1
Thomson, J.M.2
Hammond, S.M.3
-
70
-
-
0141493493
-
Control of leaf morphogenesis by microRNAs
-
doi: 10.1038/nature01958
-
Palatnik, J. F., Allen, E., Wu, X., Schommer, C., Schwab, R., Carrington, J. C., et al. (2003). Control of leaf morphogenesis by microRNAs. Nature 425, 257-263. doi: 10.1038/nature01958
-
(2003)
Nature
, vol.425
, pp. 257-263
-
-
Palatnik, J.F.1
Allen, E.2
Wu, X.3
Schommer, C.4
Schwab, R.5
Carrington, J.C.6
-
71
-
-
67650156804
-
Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
-
doi: 10.1104/pp.109.139139
-
Pant, B. D., Musialak-Lange, M., Nuc, P., May, P., Buhtz, A., Kehr, J., et al. (2009). Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. Plant Physiol. 150, 1541-1555. doi: 10.1104/pp.109.139139
-
(2009)
Plant Physiol.
, vol.150
, pp. 1541-1555
-
-
Pant, B.D.1
Musialak-Lange, M.2
Nuc, P.3
May, P.4
Buhtz, A.5
Kehr, J.6
-
72
-
-
52049124806
-
Determinants of microRNA processing inhibition by the developmentally regulated RNA-binding protein Lin28
-
doi: 10.1074/jbc.C800108200
-
Piskounova, E., Viswanathan, S. R., Janas, M., Lapierre, R. J., Daley, G. Q., Sliz, P., et al. (2008). Determinants of microRNA processing inhibition by the developmentally regulated RNA-binding protein Lin28. J. Biol. Chem. 283, 21310-21314. doi: 10.1074/jbc.C800108200
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 21310-21314
-
-
Piskounova, E.1
Viswanathan, S.R.2
Janas, M.3
Lapierre, R.J.4
Daley, G.Q.5
Sliz, P.6
-
73
-
-
33846290287
-
SNF1/AMPK/SnRK1 kinases, global regulators at the heart of energy control?
-
doi: 10.1016/j.tplants.2006.11.005
-
Polge, C., and Thomas, M. (2007). SNF1/AMPK/SnRK1 kinases, global regulators at the heart of energy control? Trends Plant Sci. 12, 20-28. doi: 10.1016/j.tplants.2006.11.005
-
(2007)
Trends Plant Sci.
, vol.12
, pp. 20-28
-
-
Polge, C.1
Thomas, M.2
-
74
-
-
35148819250
-
microRNAs and the regulation of glucose and lipid metabolism
-
doi: 10.1111/j.1463-1326.2007.00775.x
-
Poy, M. N., Spranger, M., and Stoffel, M. (2007). microRNAs and the regulation of glucose and lipid metabolism. Diabetes Obes. Metab. 9(Suppl. 2), 67-73. doi: 10.1111/j.1463-1326.2007.00775.x
-
(2007)
Diabetes Obes. Metab.
, vol.9
, Issue.SUPPL. 2
, pp. 67-73
-
-
Poy, M.N.1
Spranger, M.2
Stoffel, M.3
-
75
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
doi: 10.1101/gad.1476406
-
Rajagopalan, R., Vaucheret, H., Trejo, J., and Bartel, D. P. (2006). A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev. 20, 3407-3425. doi: 10.1101/gad.1476406
-
(2006)
Genes Dev.
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
76
-
-
51749093103
-
Degradation of microRNAs by a family of exoribonucleases in Arabidopsis
-
doi: 10.1126/science.1163728
-
Ramachandran, V., and Chen, X. (2008). Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science 321, 1490-1492. doi: 10.1126/science.1163728
-
(2008)
Science
, vol.321
, pp. 1490-1492
-
-
Ramachandran, V.1
Chen, X.2
-
77
-
-
84879224630
-
The hybrid Four-CBS-Domain KINbetagamma-subunit functions as the canonical gamma-subunit of the plant energy sensor SnRK1
-
(in press), doi: 10.1111/tpj.12192
-
Ramon, M., Ruelens, P., Li, Y., Sheen, J., Geuten, K., and Rolland, F. (in press). The hybrid Four-CBS-Domain KINbetagamma-subunit functions as the canonical gamma-subunit of the plant energy sensor SnRK1. Plant. J. doi: 10.1111/tpj.12192
-
Plant. J.
-
-
Ramon, M.1
Ruelens, P.2
Li, Y.3
Sheen, J.4
Geuten, K.5
Rolland, F.6
-
78
-
-
84857319061
-
Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana
-
doi: 10.1016/j.plantsci.2012.01.014
-
Ren, L., and Tang, G. (2012). Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana. Plant Sci. 187, 59-68. doi: 10.1016/j.plantsci.2012.01.014
-
(2012)
Plant Sci.
, vol.187
, pp. 59-68
-
-
Ren, L.1
Tang, G.2
-
79
-
-
33846926826
-
ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination
-
doi: 10.1111/j.1365-313X.2006.02980.x
-
Reyes, J. L., and Chua, N. H. (2007). ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J. 49, 592-606. doi: 10.1111/j.1365-313X.2006.02980.x
-
(2007)
Plant J.
, vol.49
, pp. 592-606
-
-
Reyes, J.L.1
Chua, N.H.2
-
80
-
-
66149170070
-
Real-time quantitative RT-PCR: Design, calculations, and statistics
-
doi: 10.1105/tpc.109.066001
-
Rieu, I., and Powers, S. J. (2009). Real-time quantitative RT-PCR: design, calculations, and statistics. Plant Cell 21, 1031-1033. doi: 10.1105/tpc.109.066001
-
(2009)
Plant Cell
, vol.21
, pp. 1031-1033
-
-
Rieu, I.1
Powers, S.J.2
-
81
-
-
70349881898
-
Antisense expression of mitochondrial ATP synthase subunits OSCP (ATP5) and gamma (ATP3) alters leaf morphology, metabolism and gene expression in Arabidopsis
-
doi: 10.1093/pcp/pcp125
-
Robison, M. M., Ling, X., Smid, M. P., Zarei, A., and Wolyn, D. J. (2009). Antisense expression of mitochondrial ATP synthase subunits OSCP (ATP5) and gamma (ATP3) alters leaf morphology, metabolism and gene expression in Arabidopsis. Plant Cell Physiol. 50, 1840-1850. doi: 10.1093/pcp/pcp125
-
(2009)
Plant Cell Physiol.
, vol.50
, pp. 1840-1850
-
-
Robison, M.M.1
Ling, X.2
Smid, M.P.3
Zarei, A.4
Wolyn, D.J.5
-
82
-
-
33745908987
-
Sugar sensing and signaling in plants: Conserved and novel mechanisms
-
doi: 10.1146/annurev.arplant.57.032905.105441
-
Rolland, F., Baena-Gonzalez, E., and Sheen, J. (2006). Sugar sensing and signaling in plants: conserved and novel mechanisms. Annu. Rev. Plant Biol. 57, 675-709. doi: 10.1146/annurev.arplant.57.032905.105441
-
(2006)
Annu. Rev. Plant Biol.
, vol.57
, pp. 675-709
-
-
Rolland, F.1
Baena-Gonzalez, E.2
Sheen, J.3
-
83
-
-
33745804463
-
MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis
-
doi: 10.1105/tpc.106.042127
-
Ronemus, M., Vaughn, M. W., and Martienssen, R. A. (2006). MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. Plant Cell 18, 1559-1574. doi: 10.1105/tpc.106.042127
-
(2006)
Plant Cell
, vol.18
, pp. 1559-1574
-
-
Ronemus, M.1
Vaughn, M.W.2
Martienssen, R.A.3
-
84
-
-
67651036643
-
Roles of plant small RNAs in biotic stress responses
-
doi: 10.1146/annurev.arplant.043008.092111
-
Ruiz-Ferrer, V., and Voinnet, O. (2009). Roles of plant small RNAs in biotic stress responses. Annu. Rev. Plant Biol. 60, 485-510. doi: 10.1146/annurev.arplant.043008.092111
-
(2009)
Annu. Rev. Plant Biol.
, vol.60
, pp. 485-510
-
-
Ruiz-Ferrer, V.1
Voinnet, O.2
-
85
-
-
48649103982
-
A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment
-
doi: 10.1038/ncb1759
-
Rybak, A., Fuchs, H., Smirnova, L., Brandt, C., Pohl, E. E., Nitsch, R., et al. (2008). A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment. Nat. Cell Biol. 10, 987-993. doi: 10.1038/ncb1759
-
(2008)
Nat. Cell Biol.
, vol.10
, pp. 987-993
-
-
Rybak, A.1
Fuchs, H.2
Smirnova, L.3
Brandt, C.4
Pohl, E.E.5
Nitsch, R.6
-
86
-
-
33847679625
-
Improved precision and accuracy for microarrays using updated probe set definitions
-
doi: 10.1186/1471-2105-8-48
-
Sandberg, R., and Larsson, O. (2007). Improved precision and accuracy for microarrays using updated probe set definitions. BMC Bioinformatics 8:48. doi: 10.1186/1471-2105-8-48
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 48
-
-
Sandberg, R.1
Larsson, O.2
-
87
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
doi: 10.1016/j.devcel.2005.01.018
-
Schwab, R., Palatnik, J. F., Riester, M., Schommer, C., Schmid, M., and Weigel, D. (2005). Specific effects of microRNAs on the plant transcriptome. Dev. Cell 8, 517-527. doi: 10.1016/j.devcel.2005.01.018
-
(2005)
Dev. Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
Weigel, D.6
-
88
-
-
33748041467
-
SNF1-related kinases allow plants to tolerate herbivory by allocating carbon to roots
-
doi: 10.1073/pnas.0602316103
-
Schwachtje, J., Minchin, P. E., Jahnke, S., Van Dongen, J. T., Schittko, U., and Baldwin, I. T. (2006). SNF1-related kinases allow plants to tolerate herbivory by allocating carbon to roots. Proc. Natl. Acad. Sci. U.S.A. 103, 12935-12940. doi: 10.1073/pnas.0602316103
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 12935-12940
-
-
Schwachtje, J.1
Minchin, P.E.2
Jahnke, S.3
Van Dongen, J.T.4
Schittko, U.5
Baldwin, I.T.6
-
89
-
-
33747505089
-
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
-
doi: 10.1105/tpc.106.041673
-
Sunkar, R., Kapoor, A., and Zhu, J. K. (2006). Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 18, 2051-2065. doi: 10.1105/tpc.106.041673
-
(2006)
Plant Cell
, vol.18
, pp. 2051-2065
-
-
Sunkar, R.1
Kapoor, A.2
Zhu, J.K.3
-
90
-
-
84862779295
-
Functions of microRNAs in plant stress responses
-
doi: 10.1016/j.tplants.2012.01.010
-
Sunkar, R., Li, Y. F., and Jagadeeswaran, G. (2012). Functions of microRNAs in plant stress responses. Trends Plant Sci. 17, 196-203. doi: 10.1016/j.tplants.2012.01.010
-
(2012)
Trends Plant Sci.
, vol.17
, pp. 196-203
-
-
Sunkar, R.1
Li, Y.F.2
Jagadeeswaran, G.3
-
91
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
doi: 10.1105/tpc.104.022830
-
Sunkar, R., and Zhu, J. K. (2004). Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16, 2001-2019. doi: 10.1105/tpc.104.022830
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
92
-
-
33644999271
-
Sucrose-specific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene
-
doi: 10.1104/pp.105.066688
-
Teng, S., Keurentjes, J., Bentsink, L., Koornneef, M., and Smeekens, S. (2005). Sucrose-specific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene. Plant Physiol. 139, 1840-1852. doi: 10.1104/pp.105.066688
-
(2005)
Plant Physiol.
, vol.139
, pp. 1840-1852
-
-
Teng, S.1
Keurentjes, J.2
Bentsink, L.3
Koornneef, M.4
Smeekens, S.5
-
93
-
-
84855936641
-
Regulation of miR319 during cold stress in sugarcane
-
doi: 10.1111/j.1365-3040.2011.02430.x
-
Thiebaut, F., Rojas, C. A., Almeida, K. L., Grativol, C., Domiciano, G. C., Lamb, C. R., et al. (2012). Regulation of miR319 during cold stress in sugarcane. Plant Cell Environ. 35, 502-512. doi: 10.1111/j.1365-3040.2011.02430.x
-
(2012)
Plant Cell Environ.
, vol.35
, pp. 502-512
-
-
Thiebaut, F.1
Rojas, C.A.2
Almeida, K.L.3
Grativol, C.4
Domiciano, G.C.5
Lamb, C.R.6
-
94
-
-
56649102410
-
Evolution of Arabidopsis MIR genes generates novel microRNA classes
-
doi: 10.1093/nar/gkn670
-
Vazquez, F., Blevins, T., Ailhas, J., Boller, T., and Meins, F. Jr. (2008). Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res. 36, 6429-6438. doi: 10.1093/nar/gkn670
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6429-6438
-
-
Vazquez, F.1
Blevins, T.2
Ailhas, J.3
Boller, T.4
Meins Jr., F.5
-
95
-
-
4944225347
-
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs
-
doi: 10.1016/j.molcel.2004.09.028
-
Vazquez, F., Vaucheret, H., Rajagopalan, R., Lepers, C., Gasciolli, V., Mallory, A. C., et al. (2004). Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol. Cell 16, 69-79. doi: 10.1016/j.molcel.2004.09.028
-
(2004)
Mol. Cell
, vol.16
, pp. 69-79
-
-
Vazquez, F.1
Vaucheret, H.2
Rajagopalan, R.3
Lepers, C.4
Gasciolli, V.5
Mallory, A.C.6
-
96
-
-
40849108663
-
Selective blockade of microRNA processing by Lin28
-
doi: 10.1126/science.1154040
-
Viswanathan, S. R., Daley, G. Q., and Gregory, R. I. (2008). Selective blockade of microRNA processing by Lin28. Science 320, 97-100. doi: 10.1126/science.1154040
-
(2008)
Science
, vol.320
, pp. 97-100
-
-
Viswanathan, S.R.1
Daley, G.Q.2
Gregory, R.I.3
-
97
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
doi: 10.1016/j.cell.2009.01.046
-
Voinnet, O. (2009). Origin, biogenesis, and activity of plant microRNAs. Cell 136, 669-687. doi: 10.1016/j.cell.2009.01.046
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
98
-
-
82755191522
-
An importin beta protein negatively regulates MicroRNA activity in Arabidopsis
-
doi: 10.1105/tpc.111.091058
-
Wang, W., Ye, R., Xin, Y., Fang, X., Li, C., Shi, H., et al. (2011). An importin beta protein negatively regulates MicroRNA activity in Arabidopsis. Plant Cell 23, 3565-3576. doi: 10.1105/tpc.111.091058
-
(2011)
Plant Cell
, vol.23
, pp. 3565-3576
-
-
Wang, W.1
Ye, R.2
Xin, Y.3
Fang, X.4
Li, C.5
Shi, H.6
-
99
-
-
33645808222
-
Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays
-
doi: 10.1186/1471-2164-7-59
-
Wang, Y., Barbacioru, C., Hyland, F., Xiao, W., Hunkapiller, K. L., Blake, J., et al. (2006). Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays. BMC Genomics 7:59. doi: 10.1186/1471-2164-7-59
-
(2006)
BMC Genomics
, vol.7
, pp. 59
-
-
Wang, Y.1
Barbacioru, C.2
Hyland, F.3
Xiao, W.4
Hunkapiller, K.L.5
Blake, J.6
-
100
-
-
70350125202
-
The CBL-CIPK Ca(2+)-decoding signaling network: Function and perspectives
-
doi: 10.1111/j.1469-8137.2009.02938.x
-
Weinl, S., and Kudla, J. (2009). The CBL-CIPK Ca(2+)-decoding signaling network: function and perspectives. New Phytol. 184, 517-528. doi: 10.1111/j.1469-8137.2009.02938.x
-
(2009)
New Phytol.
, vol.184
, pp. 517-528
-
-
Weinl, S.1
Kudla, J.2
-
101
-
-
29144528351
-
Expression of Arabidopsis MIRNA genes
-
doi: 10.1104/pp.105.062943
-
Xie, Z., Allen, E., Fahlgren, N., Calamar, A., Givan, S. A., and Carrington, J. C. (2005). Expression of Arabidopsis MIRNA genes. Plant Physiol. 138, 2145-2154. doi: 10.1104/pp.105.062943
-
(2005)
Plant Physiol.
, vol.138
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
Calamar, A.4
Givan, S.A.5
Carrington, J.C.6
-
102
-
-
62549146646
-
SQUAMOSA promoter binding protein-like7 is a central regulator for copper homeostasis in Arabidopsis
-
doi: 10.1105/tpc.108.060137
-
Yamasaki, H., Hayashi, M., Fukazawa, M., Kobayashi, Y., and Shikanai, T. (2009). SQUAMOSA promoter binding protein-like7 is a central regulator for copper homeostasis in Arabidopsis. Plant Cell 21, 347-361. doi: 10.1105/tpc.108.060137
-
(2009)
Plant Cell
, vol.21
, pp. 347-361
-
-
Yamasaki, H.1
Hayashi, M.2
Fukazawa, M.3
Kobayashi, Y.4
Shikanai, T.5
-
103
-
-
84870390234
-
Stress-induced alternative splicing provides a mechanism for the regulation of microRNA processing in Arabidopsis thaliana
-
doi: 10.1016/j.molcel.2012.08.032
-
Yan, K., Liu, P., Wu, C. A., Yang, G. D., Xu, R., Guo, Q. H., et al. (2012). Stress-induced alternative splicing provides a mechanism for the regulation of microRNA processing in Arabidopsis thaliana. Mol. Cell 48, 521-531. doi: 10.1016/j.molcel.2012.08.032
-
(2012)
Mol. Cell
, vol.48
, pp. 521-531
-
-
Yan, K.1
Liu, P.2
Wu, C.A.3
Yang, G.D.4
Xu, R.5
Guo, Q.H.6
-
104
-
-
84862908617
-
Mutations in the GW-repeat protein SUO reveal a developmental function for microRNA-mediated translational repression in Arabidopsis
-
doi: 10.1073/pnas.1114673109
-
Yang, L., Wu, G., and Poethig, R. S. (2012). Mutations in the GW-repeat protein SUO reveal a developmental function for microRNA-mediated translational repression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 109, 315-320. doi: 10.1073/pnas.1114673109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 315-320
-
-
Yang, L.1
Wu, G.2
Poethig, R.S.3
-
105
-
-
34447099171
-
Arabidopsis mesophyll protoplasts: A versatile cell system for transient gene expression analysis
-
doi: 10.1038/nprot.2007.199
-
Yoo, S. D., Cho, Y. H., and Sheen, J. (2007). Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat. Protoc. 2, 1565-1572. doi: 10.1038/nprot.2007.199
-
(2007)
Nat. Protoc.
, vol.2
, pp. 1565-1572
-
-
Yoo, S.D.1
Cho, Y.H.2
Sheen, J.3
-
106
-
-
84868092917
-
Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis
-
doi: 10.1073/pnas.1216199109
-
Zhan, X., Wang, B., Li, H., Liu, R., Kalia, R. K., Zhu, J. K., et al. (2012). Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis. Proc. Natl. Acad. Sci. U.S.A. 109, 18198-18203. doi: 10.1073/pnas.1216199109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 18198-18203
-
-
Zhan, X.1
Wang, B.2
Li, H.3
Liu, R.4
Kalia, R.K.5
Zhu, J.K.6
-
107
-
-
40749119750
-
The disturbance of small RNA pathways enhanced abscisic acid response and multiple stress responses in Arabidopsis
-
doi: 10.1111/j.1365-3040.2008.01786.x
-
Zhang, J. F., Yuan, L. J., Shao, Y., Du, W., Yan, D. W., and Lu, Y. T. (2008). The disturbance of small RNA pathways enhanced abscisic acid response and multiple stress responses in Arabidopsis. Plant Cell Environ. 31, 562-574. doi: 10.1111/j.1365-3040.2008.01786.x
-
(2008)
Plant Cell Environ.
, vol.31
, pp. 562-574
-
-
Zhang, J.F.1
Yuan, L.J.2
Shao, Y.3
Du, W.4
Yan, D.W.5
Lu, Y.T.6
-
108
-
-
78650517556
-
Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks
-
doi: 10.1007/s11103-010-9710-8
-
Zhang, W., Gao, S., Zhou, X., Chellappan, P., Chen, Z., Zhang, X., et al. (2011). Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks. Plant Mol. Biol. 75, 93-105. doi: 10.1007/s11103-010-9710-8
-
(2011)
Plant Mol. Biol.
, vol.75
, pp. 93-105
-
-
Zhang, W.1
Gao, S.2
Zhou, X.3
Chellappan, P.4
Chen, Z.5
Zhang, X.6
-
109
-
-
84874639087
-
Constitutive expression of a miR319 gene alters plant development and enhances salt and drought tolerance in transgenic creeping bentgrass
-
doi: 10.1104/pp.112.208702
-
Zhou, M., Li, D., Li, Z., Hu, Q., Yang, C., Zhu, L., et al. (2013). Constitutive expression of a miR319 gene alters plant development and enhances salt and drought tolerance in transgenic creeping bentgrass. Plant Physiol. 161, 1375-1391. doi: 10.1104/pp.112.208702
-
(2013)
Plant Physiol.
, vol.161
, pp. 1375-1391
-
-
Zhou, M.1
Li, D.2
Li, Z.3
Hu, Q.4
Yang, C.5
Zhu, L.6
-
110
-
-
55049118172
-
Identification of cold-inducible microRNAs in plants by transcriptome analysis
-
doi: 10.1016/j.bbagrm.2008.04.005
-
Zhou, X., Wang, G., Sutoh, K., Zhu, J. K., and Zhang, W. (2008). Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochim. Biophys. Acta 1779, 780-788. doi: 10.1016/j.bbagrm.2008.04.005
-
(2008)
Biochim. Biophys. Acta
, vol.1779
, pp. 780-788
-
-
Zhou, X.1
Wang, G.2
Sutoh, K.3
Zhu, J.K.4
Zhang, W.5
-
111
-
-
34247262061
-
UV-B responsive microRNA genes in Arabidopsis thaliana
-
doi: 10.1038/msb4100143
-
Zhou, X., Wang, G., and Zhang, W. (2007). UV-B responsive microRNA genes in Arabidopsis thaliana. Mol. Syst. Biol. 3, 103. doi: 10.1038/msb4100143
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 103
-
-
Zhou, X.1
Wang, G.2
Zhang, W.3
|