-
2
-
-
3242715114
-
Reactive oxygen species: Metabolism, oxidative stress, and signal transduction
-
Apel K, Hirt H (2004) Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol 55: 373-399
-
(2004)
Annu Rev Plant Biol
, vol.55
, pp. 373-399
-
-
Apel, K.1
Hirt, H.2
-
4
-
-
0242361521
-
Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes
-
Aukerman M, Sakai H (2003) Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes. Plant Cell 15: 2730-2741
-
(2003)
Plant Cell
, vol.15
, pp. 2730-2741
-
-
Aukerman, M.1
Sakai, H.2
-
5
-
-
22144457368
-
Antiquity of microRNAs and their targets in land plants
-
Axtell M, Bartel D (2005) Antiquity of microRNAs and their targets in land plants. Plant Cell 17: 1658-1673
-
(2005)
Plant Cell
, vol.17
, pp. 1658-1673
-
-
Axtell, M.1
Bartel, D.2
-
6
-
-
33745960196
-
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants
-
Bari R, Pant BD, Stitt M, Scheible W(2006) PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol 141: 988-999
-
(2006)
Plant Physiol
, vol.141
, pp. 988-999
-
-
Bari, R.1
Pant, B.D.2
Stitt, M.3
Scheible, W.4
-
7
-
-
1342325437
-
Photo-oxidative stress in a xanthophyll-deficient mutant of Chlamydomonas
-
Baroli I, Gutman B, Ledford H, Shin J, Chin B, Havaux M, Niyogi K (2004) Photo-oxidative stress in a xanthophyll-deficient mutant of Chlamydomonas. J Biol Chem 279: 6337-6344
-
(2004)
J Biol Chem
, vol.279
, pp. 6337-6344
-
-
Baroli, I.1
Gutman, B.2
Ledford, H.3
Shin, J.4
Chin, B.5
Havaux, M.6
Niyogi, K.7
-
8
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel D (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.1
-
9
-
-
1942453302
-
Predicting gene expression from sequence
-
Beer M, Tavazoie S (2004) Predicting gene expression from sequence. Cell 117: 185-198
-
(2004)
Cell
, vol.117
, pp. 185-198
-
-
Beer, M.1
Tavazoie, S.2
-
10
-
-
3843089328
-
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
-
Bonnet E, Wuyts J, Rouze P, de Peer YV (2004) Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci USA 101: 11511-11516
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11511-11516
-
-
Bonnet, E.1
Wuyts, J.2
Rouze, P.3
de Peer, Y.V.4
-
11
-
-
0035135420
-
Regulatory element detection using correlation with expression
-
Bussemaker H, Li H, Siggia E (2001) Regulatory element detection using correlation with expression. Nat Genet 27: 167-171
-
(2001)
Nat Genet
, vol.27
, pp. 167-171
-
-
Bussemaker, H.1
Li, H.2
Siggia, E.3
-
12
-
-
0032127565
-
Combinatorial interaction of lightresponsive elements plays a critical role in determining the response characteristics of lightregulated promoters in Arabidopsis
-
Chattopadhyay S, Puente P, Deng X, Wei N (1998) Combinatorial interaction of lightresponsive elements plays a critical role in determining the response characteristics of lightregulated promoters in Arabidopsis. Plant J 15: 69-77
-
(1998)
Plant J
, vol.15
, pp. 69-77
-
-
Chattopadhyay, S.1
Puente, P.2
Deng, X.3
Wei, N.4
-
13
-
-
1642366133
-
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen X (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 303: 2022-2025
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.1
-
14
-
-
85115040066
-
-
Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF, l Su C (2006) Regulation of phosphate homeostasis by microuRNA in Arabidopsis. Plant Cell 18: 412-421
-
Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF, l Su C (2006) Regulation of phosphate homeostasis by microuRNA in Arabidopsis. Plant Cell 18: 412-421
-
-
-
-
15
-
-
16044366037
-
From seed germination to flowering, light controls plant development via the pigment phytochrome
-
Chory J, Chatterjee M, Cook R, Elich T, Fankhauser C, Li J, Nagpal P, Neff M, Pepper A, Poole D, Reed J, Vitart V (1996) From seed germination to flowering, light controls plant development via the pigment phytochrome. Proc Natl Acad Sci USA 93: 12066-12071
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 12066-12071
-
-
Chory, J.1
Chatterjee, M.2
Cook, R.3
Elich, T.4
Fankhauser, C.5
Li, J.6
Nagpal, P.7
Neff, M.8
Pepper, A.9
Poole, D.10
Reed, J.11
Vitart, V.12
-
16
-
-
0035719883
-
Identification of genes expressed in response to light stress in leaves of Arabidopsis thaliana using RNA differential display
-
Dunaeva M, Adamska I (2001) Identification of genes expressed in response to light stress in leaves of Arabidopsis thaliana using RNA differential display. Eur J Biochem 268: 5521-5529
-
(2001)
Eur J Biochem
, vol.268
, pp. 5521-5529
-
-
Dunaeva, M.1
Adamska, I.2
-
17
-
-
0035928780
-
Establishment of polarity in lateral organs of plants
-
Eshed Y, Baum S, Perea J, Bowman J (2001) Establishment of polarity in lateral organs of plants. Curr Biol 11: 1251-1260
-
(2001)
Curr Biol
, vol.11
, pp. 1251-1260
-
-
Eshed, Y.1
Baum, S.2
Perea, J.3
Bowman, J.4
-
18
-
-
27844526222
-
A miRNA involved in phosphate starvation response in Arabidopsis
-
Fujii H, Chiou T, Zhu J (2005) A miRNA involved in phosphate starvation response in Arabidopsis. Curr Biol 15: 2038-2043
-
(2005)
Curr Biol
, vol.15
, pp. 2038-2043
-
-
Fujii, H.1
Chiou, T.2
Zhu, J.3
-
19
-
-
0034782505
-
The protective functions of carotenoid and flavonoid pigments against excess visible radiation at chilling temperature investigated in Arabidopsis npq and tt mutants
-
Harvaux M, Kloppstech K (2001) The protective functions of carotenoid and flavonoid pigments against excess visible radiation at chilling temperature investigated in Arabidopsis npq and tt mutants. Planta 213: 953-966
-
(2001)
Planta
, vol.213
, pp. 953-966
-
-
Harvaux, M.1
Kloppstech, K.2
-
20
-
-
3042767202
-
MicroRNAs: Small RNAs with a big role in gene regulation
-
He L, Hannon G (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5: 522-531
-
(2004)
Nat Rev Genet
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.2
-
22
-
-
23644450595
-
Characterization of a highly variable eutherian microRNA gene
-
Houbaviy H, Dennis L, Jaenisch R, Sharp P (2005) Characterization of a highly variable eutherian microRNA gene. RNA 11: 1245-1257
-
(2005)
RNA
, vol.11
, pp. 1245-1257
-
-
Houbaviy, H.1
Dennis, L.2
Jaenisch, R.3
Sharp, P.4
-
23
-
-
33644825186
-
Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis
-
Jiao Y, Ma L, Strickland E, Deng X (2005) Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis. Plant Cell 17: 3239-3256
-
(2005)
Plant Cell
, vol.17
, pp. 3239-3256
-
-
Jiao, Y.1
Ma, L.2
Strickland, E.3
Deng, X.4
-
24
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades M, Bartel D (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14: 787-799
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.1
Bartel, D.2
-
25
-
-
1542377275
-
Spatially restricted microRNA directs leaf polarity through ARGONAUTE1
-
Kidner C, Martienssen R (2004) Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature 428: 81-84
-
(2004)
Nature
, vol.428
, pp. 81-84
-
-
Kidner, C.1
Martienssen, R.2
-
26
-
-
0042440306
-
Analysis of hydrogen peroxide-independent expression of the
-
Kimura M, Manabe K, Abe T, Yoshida S, Matsui M, Yamamoto Y (2003a) Analysis of hydrogen peroxide-independent expression of the. Photochem Photobiol 77: 668-674
-
(2003)
Photochem Photobiol
, vol.77
, pp. 668-674
-
-
Kimura, M.1
Manabe, K.2
Abe, T.3
Yoshida, S.4
Matsui, M.5
Yamamoto, Y.6
-
27
-
-
10744227834
-
Identification of Arabidopsis genes regulated by high light-stress using cDNA microarray
-
Kimura M, Yamamoto Y, Seki M, Sakurai T, Sato M, Abe T, Yoshida S, Manabe K, Shinozaki K, Matsui M (2003b) Identification of Arabidopsis genes regulated by high light-stress using cDNA microarray. Photochem Photobiol 77: 226-233
-
(2003)
Photochem Photobiol
, vol.77
, pp. 226-233
-
-
Kimura, M.1
Yamamoto, Y.2
Seki, M.3
Sakurai, T.4
Sato, M.5
Abe, T.6
Yoshida, S.7
Manabe, K.8
Shinozaki, K.9
Matsui, M.10
-
28
-
-
0034879923
-
Arabidopsis transcriptional regulation by light stress via hydrogen peroxide-dependent and -independent pathways
-
Kimura M, Yoshizumi T, Manabe K, Yamamoto Y, Matsui M (2001) Arabidopsis transcriptional regulation by light stress via hydrogen peroxide-dependent and -independent pathways. Genes Cells 6: 607-617
-
(2001)
Genes Cells
, vol.6
, pp. 607-617
-
-
Kimura, M.1
Yoshizumi, T.2
Manabe, K.3
Yamamoto, Y.4
Matsui, M.5
-
29
-
-
33645822943
-
Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots
-
Lee J, Colinas J, Wang J, Mace D, Ohler U, Benfey P (2006) Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Proc Natl Acad Sci USA 103: 6055-6060
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6055-6060
-
-
Lee, J.1
Colinas, J.2
Wang, J.3
Mace, D.4
Ohler, U.5
Benfey, P.6
-
30
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y, Kim M, Han J, Yeom K, Lee S, Baek S, Kim V (2004) MicroRNA genes are transcribed by RNA polymerase II. EMBO J 23: 4051-4060
-
(2004)
EMBO J
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.4
Lee, S.5
Baek, S.6
Kim, V.7
-
31
-
-
0037144457
-
Cleavage of Scarecrowlike mRNA targets directed by a class of Arabidopsis miRNA
-
Llave C, Xie Z, Kasschau K, Carrington J (2002) Cleavage of Scarecrowlike mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056
-
(2002)
Science
, vol.297
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.2
Kasschau, K.3
Carrington, J.4
-
32
-
-
27744471144
-
Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
-
Lu S, Sun Y, Shi R, Clark C, Li L, Chiang V (2005) Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 17: 2186-2203
-
(2005)
Plant Cell
, vol.17
, pp. 2186-2203
-
-
Lu, S.1
Sun, Y.2
Shi, R.3
Clark, C.4
Li, L.5
Chiang, V.6
-
33
-
-
0035822096
-
Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots
-
McConnell J, Emery J, Eshed Y, Bao N, Bowman J, Barton M (2001) Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411: 709-713
-
(2001)
Nature
, vol.411
, pp. 709-713
-
-
McConnell, J.1
Emery, J.2
Eshed, Y.3
Bao, N.4
Bowman, J.5
Barton, M.6
-
34
-
-
1842738356
-
Evolution of document networks
-
Menczer F (2004) Evolution of document networks. Proc Natl Acad Sci USA 101 (Suppl 1): 5261-5265
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.SUPPL. 1
, pp. 5261-5265
-
-
Menczer, F.1
-
35
-
-
16544393288
-
Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: Analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray
-
Narusaka Y, Narusaka M, Seki M, Umezawa T, Ishida J, Nakajima M, Enju A, Shinozaki K (2004) Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray. Plant Mol Biol 55: 327-342
-
(2004)
Plant Mol Biol
, vol.55
, pp. 327-342
-
-
Narusaka, Y.1
Narusaka, M.2
Seki, M.3
Umezawa, T.4
Ishida, J.5
Nakajima, M.6
Enju, A.7
Shinozaki, K.8
-
36
-
-
0141493493
-
Control of leaf morphogenesis by microRNAs
-
Palatnik J, Allen E, Wu X, Schommer C, Schwab R, Carrington J, Weigel D (2003) Control of leaf morphogenesis by microRNAs. Nature 425: 257-263
-
(2003)
Nature
, vol.425
, pp. 257-263
-
-
Palatnik, J.1
Allen, E.2
Wu, X.3
Schommer, C.4
Schwab, R.5
Carrington, J.6
Weigel, D.7
-
37
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
Schwab R, Palatnik J, Riester M, Schommer C, Schmid M, Weigel D (2005) Specific effects of microRNAs on the plant transcriptome. Dev Cell 8: 517-527
-
(2005)
Dev Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.2
Riester, M.3
Schommer, C.4
Schmid, M.5
Weigel, D.6
-
38
-
-
33745955558
-
Defects in the cytochrome b6/f complex prevent light-induced expression of nuclear genes involved in chlorophyll biosynthesis
-
Shao N, Vallon O, Dent R, Niyogi K, Beck C (2006) Defects in the cytochrome b6/f complex prevent light-induced expression of nuclear genes involved in chlorophyll biosynthesis. Plant Physiol 141: 1128-1137
-
(2006)
Plant Physiol
, vol.141
, pp. 1128-1137
-
-
Shao, N.1
Vallon, O.2
Dent, R.3
Niyogi, K.4
Beck, C.5
-
39
-
-
0141725442
-
Regulatory network of gene expression in the drought and cold stress responses
-
Shinozaki K, Yamaguchi-Shinozaki K, Seki M (2003) Regulatory network of gene expression in the drought and cold stress responses. Curr Opin Plant Biol 6: 410-417
-
(2003)
Curr Opin Plant Biol
, vol.6
, pp. 410-417
-
-
Shinozaki, K.1
Yamaguchi-Shinozaki, K.2
Seki, M.3
-
40
-
-
4043074968
-
Novel and stressregulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar R, Zhu J (2004) Novel and stressregulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16: 2001-2019
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.2
-
41
-
-
0029610873
-
The GATA-binding protein CGF-1 is closely related to GT-1
-
Teakle G, Kay S (1995) The GATA-binding protein CGF-1 is closely related to GT-1. Plant Mol Biol 29: 1253-1266
-
(1995)
Plant Mol Biol
, vol.29
, pp. 1253-1266
-
-
Teakle, G.1
Kay, S.2
-
42
-
-
0028836546
-
-
Terzaghi , Cashmore A (1995) Light-regulated transcription. Ann Rev Plant Physiol Plant MolBiol 46: 445-474
-
Terzaghi , Cashmore A (1995) Light-regulated transcription. Ann Rev Plant Physiol Plant MolBiol 46: 445-474
-
-
-
-
43
-
-
2442650370
-
The action of ARGONAUT 1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
-
Vaucheret H, Vazquez F, Crete P, Bartel D (2004) The action of ARGONAUT 1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev 18: 1187-1197
-
(2004)
Genes Dev
, vol.18
, pp. 1187-1197
-
-
Vaucheret, H.1
Vazquez, F.2
Crete, P.3
Bartel, D.4
-
44
-
-
1642424387
-
Promoter analysis and transcription profiling: Integration of genetic data enhances understanding of gene expression
-
Venter M, Botha F (2004) Promoter analysis and transcription profiling: integration of genetic data enhances understanding of gene expression. Physiol Plant 120: 74-83
-
(2004)
Physiol Plant
, vol.120
, pp. 74-83
-
-
Venter, M.1
Botha, F.2
-
45
-
-
23144460837
-
WordSpy: Identifying transcription factor binding motifs by uilding a dictionary and learning a grammar
-
Wang G, Yu T, Zhang W (2005) WordSpy: identifying transcription factor binding motifs by uilding a dictionary and learning a grammar. Nucleic Acids Res 33: W412-W416
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Wang, G.1
Yu, T.2
Zhang, W.3
-
46
-
-
33745631199
-
A steganalysis-based approach to comprehensive identification and characterization of functional regulatory elements
-
Wang G, Zhang W (2006) A steganalysis-based approach to comprehensive identification and characterization of functional regulatory elements. Genome Biol 7: R49
-
(2006)
Genome Biol
, vol.7
-
-
Wang, G.1
Zhang, W.2
-
47
-
-
26444509696
-
Gene network analysis in plant development by genomic technologies
-
Wellmer F, Riechmann J (2005) Gene network analysis in plant development by genomic technologies. Int J Dev Biol 49: 745-759
-
(2005)
Int J Dev Biol
, vol.49
, pp. 745-759
-
-
Wellmer, F.1
Riechmann, J.2
-
48
-
-
29144528351
-
Expression of Arabidopsis MIRNA genes
-
Xie Z, Allen E, Fahlgren N, Calamar A, Givan S, Carrington J (2005) Expression of Arabidopsis MIRNA genes. Plant Physiol 138: 2145-2154
-
(2005)
Plant Physiol
, vol.138
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
Calamar, A.4
Givan, S.5
Carrington, J.6
-
49
-
-
0038076109
-
Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation
-
Xie Z, Kasschau K, Carrington J (2003) Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 13: 784-789
-
(2003)
Curr Biol
, vol.13
, pp. 784-789
-
-
Xie, Z.1
Kasschau, K.2
Carrington, J.3
-
50
-
-
13744261322
-
Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters
-
Yamaguchi-Shinozaki K, Shinozaki K (2005) Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters. Trends Plant Sci 10: 88-94
-
(2005)
Trends Plant Sci
, vol.10
, pp. 88-94
-
-
Yamaguchi-Shinozaki, K.1
Shinozaki, K.2
-
51
-
-
3042595719
-
From laboratory to field. Using information from Arabidopsis to engineer salt, cold, and drought tolerance in crops
-
Zhang J, Creelman R, Zhu J (2004) From laboratory to field. Using information from Arabidopsis to engineer salt, cold, and drought tolerance in crops. Plant Physiol 135: 615-621
-
(2004)
Plant Physiol
, vol.135
, pp. 615-621
-
-
Zhang, J.1
Creelman, R.2
Zhu, J.3
-
52
-
-
34047234690
-
Characterization and identification of MicroRNA promoters in four model species
-
doi:10.1371/journal.pcbi.0030037.eor
-
Zhou X, Ruan J, Wang G, Zhang W (2007) Characterization and identification of MicroRNA promoters in four model species. PLoS Computat Biol (in press) Provisional doi:10.1371/journal.pcbi.0030037.eor
-
(2007)
PLoS Computat Biol (in press) Provisional
-
-
Zhou, X.1
Ruan, J.2
Wang, G.3
Zhang, W.4
|