메뉴 건너뛰기




Volumn 14, Issue 2, 2014, Pages 272-285

Evaluation of 11 single-locus and seven multilocus DNA barcodes in Lamium L. (Lamiaceae)

Author keywords

DNA barcoding; Lamium; Molecular diagnostics; rpo genes; Species identification

Indexed keywords

CHLOROPLAST DNA; PLANT DNA; RIBOSOMAL SPACER DNA;

EID: 84894282696     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12175     Document Type: Article
Times cited : (51)

References (58)
  • 2
    • 80052244690 scopus 로고    scopus 로고
    • Molecular phylogeny and taxonomy of the genus Lamium L. (Lamiaceae): disentangling origins of presumed allotetraploids
    • Bendiksby M, Brysting AK, Thorbek L, Gussarova G, Ryding O (2011) Molecular phylogeny and taxonomy of the genus Lamium L. (Lamiaceae): disentangling origins of presumed allotetraploids. Taxon, 60, 986-1000.
    • (2011) Taxon , vol.60 , pp. 986-1000
    • Bendiksby, M.1    Brysting, A.K.2    Thorbek, L.3    Gussarova, G.4    Ryding, O.5
  • 3
    • 84981837475 scopus 로고
    • Cytogenetic studies on relationships between annual species of Lamium
    • Bernström P (1955) Cytogenetic studies on relationships between annual species of Lamium. Hereditas, 41, 1-122.
    • (1955) Hereditas , vol.41 , pp. 1-122
    • Bernström, P.1
  • 5
    • 68449095065 scopus 로고    scopus 로고
    • Barcoding of plants and fungi
    • Chase MW, Fay MF (2009) Barcoding of plants and fungi. Science, 325, 682-683.
    • (2009) Science , vol.325 , pp. 682-683
    • Chase, M.W.1    Fay, M.F.2
  • 7
    • 34347387600 scopus 로고    scopus 로고
    • A proposal for a standardized protocol to barcode all land plants
    • Chase MW, Cowan RS, Hollingsworth PM et al. (2007) A proposal for a standardized protocol to barcode all land plants. Taxon, 56, 295-299.
    • (2007) Taxon , vol.56 , pp. 295-299
    • Chase, M.W.1    Cowan, R.S.2    Hollingsworth, P.M.3
  • 8
    • 33748896672 scopus 로고    scopus 로고
    • Biodiversity and identification of sourdough lactic acid bacteria
    • De Vuyst L, Vancanneyt M (2007) Biodiversity and identification of sourdough lactic acid bacteria. Food Microbiology, 24, 120-127.
    • (2007) Food Microbiology , vol.24 , pp. 120-127
    • De Vuyst, L.1    Vancanneyt, M.2
  • 9
    • 84894282179 scopus 로고    scopus 로고
    • Lamium L.-hluchavka
    • (ed Slavík B), Volume 6 -, Academia: Praha, Czech Republic.
    • Dvořáková M (2000) Lamium L.-hluchavka. In: Květena Českě Republiky (ed Slavík B), Volume 6, pp. 596-603, Academia: Praha, Czech Republic.
    • (2000) Květena Českě Republiky , pp. 596-603
    • Dvořáková, M.1
  • 10
    • 50949125486 scopus 로고    scopus 로고
    • Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well
    • Fazekas AJ, Burgess KS, Kesanakurti PR et al. (2008) Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS ONE, 3, e2802.
    • (2008) PLoS ONE , vol.3
    • Fazekas, A.J.1    Burgess, K.S.2    Kesanakurti, P.R.3
  • 11
    • 65349124174 scopus 로고    scopus 로고
    • Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?
    • Fazekas AJ, Kesanakurti PR, Burgess KS et al. (2009) Are plant species inherently harder to discriminate than animal species using DNA barcoding markers? Molecular Ecology Resources, 9(Suppl. 1), 130-139.
    • (2009) Molecular Ecology Resources , vol.9 , Issue.SUPPL. 1 , pp. 130-139
    • Fazekas, A.J.1    Kesanakurti, P.R.2    Burgess, K.S.3
  • 12
    • 70349694426 scopus 로고    scopus 로고
    • Forensic botany: species identification of botanical trace evidence using a multigene barcoding approach
    • Ferri G, Alù M, Corradini B, Beduschi G (2009) Forensic botany: species identification of botanical trace evidence using a multigene barcoding approach. International Journal of Legal Medicine, 123, 395-401.
    • (2009) International Journal of Legal Medicine , vol.123 , pp. 395-401
    • Ferri, G.1    Alù, M.2    Corradini, B.3    Beduschi, G.4
  • 13
    • 58449087888 scopus 로고    scopus 로고
    • Selection of candidate coding DNA barcoding regions for use on land plants
    • Ford CS, Ayers KL, Toomey N et al. (2009) Selection of candidate coding DNA barcoding regions for use on land plants. Botanical Journal of the Linnean Society, 159, 1-11.
    • (2009) Botanical Journal of the Linnean Society , vol.159 , pp. 1-11
    • Ford, C.S.1    Ayers, K.L.2    Toomey, N.3
  • 14
    • 0025289439 scopus 로고
    • Nucleotide sequence of the maize chloroplast rpoB/CI/C2 operon: comparison between the derived protein primary structures from various organisms with respect to functional domains
    • Gabor LI, Meinke A, Döry I, Kössel H (1990) Nucleotide sequence of the maize chloroplast rpoB/CI/C2 operon: comparison between the derived protein primary structures from various organisms with respect to functional domains. Molecular and General Genetics, 221, 379-394.
    • (1990) Molecular and General Genetics , vol.221 , pp. 379-394
    • Gabor, L.I.1    Meinke, A.2    Döry, I.3    Kössel, H.4
  • 15
    • 84894282710 scopus 로고    scopus 로고
    • World checklist of Lamiaceae and Verbenaceae. The Board of Trustees of the Royal Botanic Gardens, Kew, Richmond [online]. Available from [accessed 15 November 2012].
    • Govaerts R, Paton A, Harvey Y, Navarro T (2010) World checklist of Lamiaceae and Verbenaceae. The Board of Trustees of the Royal Botanic Gardens, Kew, Richmond [online]. Available from http://www.kew.org/wcsp/lamiaceae [accessed 15 November 2012].
    • (2010)
    • Govaerts, R.1    Paton, A.2    Harvey, Y.3    Navarro, T.4
  • 16
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleid Acids Symposium Series, 41, 95-98.
    • (1999) Nucleid Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 17
    • 84864607691 scopus 로고    scopus 로고
    • Comparison of four DNA barcodes in identifying certain medicinal plants of Lamiaceae
    • Han JP, Shi LC, Chen XC, Lin YL (2012) Comparison of four DNA barcodes in identifying certain medicinal plants of Lamiaceae. Journal of Systematics and Evolution, 50, 227-234.
    • (2012) Journal of Systematics and Evolution , vol.50 , pp. 227-234
    • Han, J.P.1    Shi, L.C.2    Chen, X.C.3    Lin, Y.L.4
  • 20
    • 60349111930 scopus 로고    scopus 로고
    • Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants
    • Hollingsworth M, Clark AA, Forrest LL et al. (2009) Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants. Molecular Ecology Resources, 9, 439-457.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 439-457
    • Hollingsworth, M.1    Clark, A.A.2    Forrest, L.L.3
  • 23
    • 84982335352 scopus 로고
    • Cytological and experimental studies on the genus Lamium
    • Jörgensen CA (1927) Cytological and experimental studies on the genus Lamium. Hereditas, 9, 126-136.
    • (1927) Hereditas , vol.9 , pp. 126-136
    • Jörgensen, C.A.1
  • 24
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
    • (1980) Journal of Molecular Evolution , vol.16 , pp. 111-120
    • Kimura, M.1
  • 25
    • 84878443837 scopus 로고    scopus 로고
    • The uneven rate of the molecular evolution of gene sequences of DNA-dependent RNA polymerase I of the genus Lamium L
    • Krawczyk K, Sawicki J (2013) The uneven rate of the molecular evolution of gene sequences of DNA-dependent RNA polymerase I of the genus Lamium L. International Journal of Molecular Sciences, 14, 11376-11391.
    • (2013) International Journal of Molecular Sciences , vol.14 , pp. 11376-11391
    • Krawczyk, K.1    Sawicki, J.2
  • 26
    • 77951631088 scopus 로고    scopus 로고
    • A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region
    • Kress JW, Erickson DL (2007) A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE, 2, e508.
    • (2007) PLoS ONE , vol.2
    • Kress, J.W.1    Erickson, D.L.2
  • 28
    • 80052008793 scopus 로고    scopus 로고
    • Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics
    • Kuang DY, Wu H, Wang YL, Gao LM, Zhang SZ, Lu L (2011) Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics. Genome, 54, 663-673.
    • (2011) Genome , vol.54 , pp. 663-673
    • Kuang, D.Y.1    Wu, H.2    Wang, Y.L.3    Gao, L.M.4    Zhang, S.Z.5    Lu, L.6
  • 30
    • 0024279293 scopus 로고
    • Chloroplast rpoA, rpoB, and rpoC genes specify at least three components of a chloroplast DNA-dependent RNA polymerase active in tRNA and mRNA transcription
    • Little MC, Hallick RB (1988) Chloroplast rpoA, rpoB, and rpoC genes specify at least three components of a chloroplast DNA-dependent RNA polymerase active in tRNA and mRNA transcription. The Journal Biological Chemistry, 263, 14302-14307.
    • (1988) The Journal Biological Chemistry , vol.263 , pp. 14302-14307
    • Little, M.C.1    Hallick, R.B.2
  • 32
    • 37649009007 scopus 로고    scopus 로고
    • Phylogeny of flowering plants by the chloroplast genome sequences: in search of a 'lucky gene'
    • Logacheva MD, Penin AA, Samigullin TH et al. (2007) Phylogeny of flowering plants by the chloroplast genome sequences: in search of a 'lucky gene'. Biochemistry, 72, 1324-1330.
    • (2007) Biochemistry , vol.72 , pp. 1324-1330
    • Logacheva, M.D.1    Penin, A.A.2    Samigullin, T.H.3
  • 33
    • 33749535839 scopus 로고    scopus 로고
    • DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success
    • Meier R, Kwong S, Vaidya GN, Peter KL (2006) DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Systematic Biology, 55, 715-728.
    • (2006) Systematic Biology , vol.55 , pp. 715-728
    • Meier, R.1    Kwong, S.2    Vaidya, G.N.3    Peter, K.L.4
  • 34
    • 84894246313 scopus 로고
    • A taxonomic revision of Lamium. PhD thesis, Leiden University Press.
    • Mennema J (1989). A taxonomic revision of Lamium. PhD thesis, Leiden University Press.
    • (1989)
    • Mennema, J.1
  • 35
    • 0000886867 scopus 로고
    • Genes and phenes in Tetrahymena
    • Nanney DL (1982) Genes and phenes in Tetrahymena. BioScience, 32, 783-788.
    • (1982) BioScience , vol.32 , pp. 783-788
    • Nanney, D.L.1
  • 36
    • 22144436248 scopus 로고    scopus 로고
    • Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes
    • Naser S, Thompson FL, Dawyndt P et al. (2005) Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology, 151, 2141-2150.
    • (2005) Microbiology , vol.151 , pp. 2141-2150
    • Naser, S.1    Thompson, F.L.2    Dawyndt, P.3
  • 39
    • 65349084397 scopus 로고    scopus 로고
    • Testing plant barcoding in a sister species complex of pantropical Acacia (Mimosoideae, Fabaceae)
    • Newmaster SG, Ragupathy S (2009) Testing plant barcoding in a sister species complex of pantropical Acacia (Mimosoideae, Fabaceae). Molecular Ecology Resources, 9(Suppl. 1), 172-180.
    • (2009) Molecular Ecology Resources , vol.9 , Issue.SUPPL. 1 , pp. 172-180
    • Newmaster, S.G.1    Ragupathy, S.2
  • 42
    • 0344376630 scopus 로고
    • An evolutionary genetic approach to understanding plastid gene function: lessons from photosynthetic and nonphotosynthetic plants
    • (ed Baltscheffsky M). Kluwer Academic Publishers, the Netherlands.
    • Palmer JD, Calie PJ, de Pamphilis PC et al. (1990) An evolutionary genetic approach to understanding plastid gene function: lessons from photosynthetic and nonphotosynthetic plants. In: Current Research in Photosynthesis. (ed Baltscheffsky M), Vol. III, pp. 475-482. Kluwer Academic Publishers, the Netherlands.
    • (1990) Current Research in Photosynthesis , vol.3 , pp. 475-482
    • Palmer, J.D.1    Calie, P.J.2    de Pamphilis, P.C.3
  • 43
    • 77749328050 scopus 로고    scopus 로고
    • rpoA is a useful gene for identification and classification of Streptococcus pneumoniae from the closely related viridans group streptococci
    • Park HK, Yoon JW, Shin JW, Kim JY, Kim W (2010) rpoA is a useful gene for identification and classification of Streptococcus pneumoniae from the closely related viridans group streptococci. FEMS Microbiology Letters, 305, 58-64.
    • (2010) FEMS Microbiology Letters , vol.305 , pp. 58-64
    • Park, H.K.1    Yoon, J.W.2    Shin, J.W.3    Kim, J.Y.4    Kim, W.5
  • 44
    • 0031112130 scopus 로고    scopus 로고
    • Phylogenetic analysis of the Triticeae (Poaceae) based on rpoA sequence data
    • Petersen G, Seberg O (1997) Phylogenetic analysis of the Triticeae (Poaceae) based on rpoA sequence data. Molecular Phylogenetics and Evolution, 7, 217-230.
    • (1997) Molecular Phylogenetics and Evolution , vol.7 , pp. 217-230
    • Petersen, G.1    Seberg, O.2
  • 45
    • 33748371658 scopus 로고    scopus 로고
    • Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta)
    • Robba L, Russell SL, Barker GL, Brodie J (2006) Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta). American Journal of Botany, 93, 1101-1108.
    • (2006) American Journal of Botany , vol.93 , pp. 1101-1108
    • Robba, L.1    Russell, S.L.2    Barker, G.L.3    Brodie, J.4
  • 46
    • 42649090839 scopus 로고    scopus 로고
    • DNA Barcoding in the Cycadales: testing the potential of proposed barcoding markers for species identification of cycads
    • Sass C, Little DP, Stevenson DW, Specht CD (2007) DNA Barcoding in the Cycadales: testing the potential of proposed barcoding markers for species identification of cycads. PLoS ONE, 2, e1154.
    • (2007) PLoS ONE , vol.2
    • Sass, C.1    Little, D.P.2    Stevenson, D.W.3    Specht, C.D.4
  • 47
    • 0032134421 scopus 로고    scopus 로고
    • RNA polymerase subunits encoded by the plastid rpo genes are not shared with the nucleus-encoded plastid enzyme
    • Serino G, Maliga P (1998) RNA polymerase subunits encoded by the plastid rpo genes are not shared with the nucleus-encoded plastid enzyme. Plant Physiology, 117, 1165-1170.
    • (1998) Plant Physiology , vol.117 , pp. 1165-1170
    • Serino, G.1    Maliga, P.2
  • 48
    • 19944430021 scopus 로고    scopus 로고
    • The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
    • Shaw J, Lickey EB, Beck JT et al. (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany, 92, 142-166.
    • (2005) American Journal of Botany , vol.92 , pp. 142-166
    • Shaw, J.1    Lickey, E.B.2    Beck, J.T.3
  • 49
    • 84860420671 scopus 로고    scopus 로고
    • Testing the potential of proposed DNA barcodes for species identification of Zingiberaceae
    • Shi LC, Zhang J, Han JP et al. (2011) Testing the potential of proposed DNA barcodes for species identification of Zingiberaceae. Journal of Systematics and Evolution, 49, 261-266.
    • (2011) Journal of Systematics and Evolution , vol.49 , pp. 261-266
    • Shi, L.C.1    Zhang, J.2    Han, J.P.3
  • 50
    • 65349160947 scopus 로고    scopus 로고
    • Plant DNA barcodes and species resolution in sedges (Carex, Cyperaceae)
    • Starr JR, Naczi RF, Chouinard BN (2009) Plant DNA barcodes and species resolution in sedges (Carex, Cyperaceae). Molecular Ecology Resources, 9(Suppl. 1), 151-163.
    • (2009) Molecular Ecology Resources , vol.9 , Issue.SUPPL. 1 , pp. 151-163
    • Starr, J.R.1    Naczi, R.F.2    Chouinard, B.N.3
  • 51
    • 0344875209 scopus 로고    scopus 로고
    • Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus
    • Sugiura C, Kobayashi Y, Aoki S, Sugita C, Sugita M (2003) Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus. Nucleic Acids Research, 31, 5324-5331.
    • (2003) Nucleic Acids Research , vol.31 , pp. 5324-5331
    • Sugiura, C.1    Kobayashi, Y.2    Aoki, S.3    Sugita, C.4    Sugita, M.5
  • 52
    • 0001376969 scopus 로고
    • The origin of Lamium hybridum, a case study in the search for the parents of hybrid species
    • Taylor R (1991) The origin of Lamium hybridum, a case study in the search for the parents of hybrid species. Northwest Science, 65, 116-124.
    • (1991) Northwest Science , vol.65 , pp. 116-124
    • Taylor, R.1
  • 53
    • 84862180099 scopus 로고    scopus 로고
    • DNA barcoding in native plants of the Labiatae (Lamiaceae) family from Chios Island (Greece) and the adjacent Çeşme-Karaburun Peninsula (Turkey)
    • Theodoridis S, Stefanaki A, Tezcan M, Aki C, Kokkini S, Vlachonasios KE (2012) DNA barcoding in native plants of the Labiatae (Lamiaceae) family from Chios Island (Greece) and the adjacent Çeşme-Karaburun Peninsula (Turkey). Molecular Ecology Resources, 12, 620-633.
    • (2012) Molecular Ecology Resources , vol.12 , pp. 620-633
    • Theodoridis, S.1    Stefanaki, A.2    Tezcan, M.3    Aki, C.4    Kokkini, S.5    Vlachonasios, K.E.6
  • 54
    • 70350376891 scopus 로고    scopus 로고
    • Fifty mosses on five trees: comparing phylogenetic information in three types of non-coding mitochondrial DNA and two chloroplast loci
    • Wahrmund U, Rei T, Müller KF, Groth-Malonek M, Knoop V (2009) Fifty mosses on five trees: comparing phylogenetic information in three types of non-coding mitochondrial DNA and two chloroplast loci. Plant Systematics and Evolution, 282, 241-255.
    • (2009) Plant Systematics and Evolution , vol.282 , pp. 241-255
    • Wahrmund, U.1    Rei, T.2    Müller, K.F.3    Groth-Malonek, M.4    Knoop, V.5
  • 56
    • 80054076912 scopus 로고    scopus 로고
    • DNA barcoding of the recently evolved genus Holcoglossum (Orchidaceae: Aeridinae): a test of DNA barcode candidates
    • Xiang XG, Hu H, Wang W, Jin XH (2011) DNA barcoding of the recently evolved genus Holcoglossum (Orchidaceae: Aeridinae): a test of DNA barcode candidates. Molecular Ecology Resources, 11, 1012-1021.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 1012-1021
    • Xiang, X.G.1    Hu, H.2    Wang, W.3    Jin, X.H.4
  • 57
    • 0842323991 scopus 로고    scopus 로고
    • Intraspecific cpDNA variations of diploid and tetraploid perennial buckwheat, Fagopyrum cymosum (Polygonaceae)
    • Yamane K, Yasui Y, Ohnishi O (2003) Intraspecific cpDNA variations of diploid and tetraploid perennial buckwheat, Fagopyrum cymosum (Polygonaceae). American Journal of Botany, 90, 339-346.
    • (2003) American Journal of Botany , vol.90 , pp. 339-346
    • Yamane, K.1    Yasui, Y.2    Ohnishi, O.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.