Intraspecific cpDNA variations of diploid and tetraploid perennial buckwheat, Fagopyrum cymosum (Polygonaceae)

American Journal of Botany

Volumn 90, Issue 3, 2003, Pages 339-346

  Yamane, Kyoko ^a   Yasui, Yasuo ^a   Ohnishi, Ohmi ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

Autotetraploid; Biogeography; Chloroplast DNA; Fagopyrum cymosum; Multiple origin; Tartary buckwheat

Indexed keywords

BIOGEOGRAPHY; DNA; PHYLOGENETICS;

EMBRYOPHYTA; FAGOPYRUM CYMOSUM; FAGOPYRUM TATARICUM; MAGNOLIOPHYTA; POLYGONACEAE;

EID: 0842323991     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.90.3.339     Document Type: Article

References (64)

1. ANDERSON, E. F. 1986. Ethnobotany of hilltribes of northern Thailand. I. Medicinal plants of Akha. Economic Botany 40: 38-53.
2. BROCHMANN, C., AND R. ELVEN. 1992. Ecological and genetic consequences of polyploidy in arctic Draba (Brassicaceae). Evolution and Trends in Plants 6: 253-262.
3. CAMPBELL, C. G. 1976. Buckwheat. In N. W. Simmonds, [ed.], Evolution of crop plants, 235-337. Longman, London, UK.
4. CHEN, Q. F. 1999. A study of resources of Fagopyrum (Polygonaceae) native to China. Botanical Journal of the Linnean Society 130: 53-64.
5. CLEGG, M. T. 1993. Chloroplast gene sequences and the study of plant evolution. Proceedings of the National Academy of Sciences, USA 90: 363-367.
6. CUENOUD, P., V. SAVOLAINEN, L. W. CHATROU, M. POWELL, R. J. GRAYER, AND M. CHASE. 2002. Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB and matK DNA sequences. American Journal of Botany 89: 132-144.
7. DARLINGTON, C. D., AND A. P. WYLIE. 1955. Chromosome atlas of flowering plants. George Allen and Unwin, London, UK.
8. FARRIS, J. S., M. KALLERSJO, A. G. KLUGE, AND C. BULT. 1994. Testing significance of incongruence. Cladistics 10: 315-319.
9. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
10. FORT, M. 1996. Late Cenozoic environmental changes and uplift on the northern side of the central Himalaya: a reappraisal from field data. Palaeogeography, Palaeoclimatology, Palaeoecology 120: 123-145.
11. FUJII, N., K. UEDA, Y. WATANO, AND T. SHIMIZU. 1997. Intraspecific sequence variation of chloroplast DNA in Pedicularis chamissionis Steven (Scrophulariaceae) and geographic structuring of the Japanese "Alpine" plants. Journal of Plant Research 110: 195-207.
12. FUJII, N., K. UEDA, Y. WATANO, AND T. SHIMIZU. 1999. Further analysis of intraspecific sequence variation of chloroplast DNA in Primula cuneifolia Ledeb. (Primulaceae): implications for biogeography of the Japanese Alpine flora. Journal of Plant Research 112: 87-95.
13. GOHIL, R. N., AND G. M. RATHAR. 1983. Comparative cytology, growth and grain composition of west Himalayan buckwheats. In Proceedings of the Second International Symposium on Buckwheat at Miyazaki, 87-101.
14. HARRISON, R. G. 1991. Molecular changes at speciation. Annual Review of Ecological Systematics 22: 281-308.
15. HSÜ, J. 1978. On the paleobotanical evidence for continental drift and the Himalayan uplift. Paleobotanist 25: 131-142.
16. INAMURA, A., Y. OHHASHI, E. SATO, Y. YODA, T. MASUZAWA, M. ITO, AND K. YOSHINAGA. 2000. Intraspecific sequences variation of chloroplast DNA reflecting variety and geographical distribution of Polygonum cuspidatum (Polygonaceae) in Japan. Journal of Plant Research 113: 419-426.
17. JOHNSON, D. A., AND J. HATTORI. 1996. Analysis of hotspot for deletion formation within the intron of the chloroplast trnI gene. Genome 39: 999-1005.
18. JOHNSON, L. A., AND D. E. SOLTIS. 1995. Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Annals of the Missouri Botanical Garden 82: 149-175.
19. JORDAN, W. C., M. W. COURTNEY, AND J. E. NEIGEL. 1996. Low levels of intraspecific genetic variation at a rapidly evolving chloroplast DNA locus in North American duckweeds (Lemnaceae). American Journal of Botany 83: 430-439.
20. KELCHNER, S. A., AND J. F. WENDEL. 1996. Hairpins create minute inversions in non-coding regions of chloroplast DNA. Current Genetics 30: 259-262.
21. KIMURA, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 111-120.
22. KISHIMA, Y., K. OGURA, K. MIZUKAMI, T. MIKAMI, AND T. ADACHI. 1995. Chloroplast DNA analysis in buckwheat species: phylogenetic relationships, origin of reproductive systems and extended inverted repeats. Plant Science 108: 173-179.
23. LEVIN, D. A. 1983. Polyploidy and novelty in flowering plants. American Naturalist 122: 1-25.
24. LI, J. J., S. WEN, Q. ZHANG, F. WANG, B. X. ZHENG, AND B. LI. 1979. A discussion on the period, amplitude and type of the uplift of the Qinghai-Xizang Plateau. Scientia Sinica 22: 1314-1328.
25. MALLA, S. B., AND P. R. SHAKYA. 1983. Medicinal plants. In T. C. Majupuria [ed.], Nepal - nature's paradise, 261-297. White Lotus, Bangkok, Thailand.
26. MORRIS, M. R. 1951. Cytogenetic studies on buckwheat. Journal of Heredity 42: 85-89.
27. MORTON, B. R., AND M. T. CLEGG. 1993. A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poceae). Current Genetics 24: 357-365.
28. NEI, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York, New York, USA.
29. NEI, M., AND W.-H. LI. 1979. Mathematical model for studing genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Science, USA 76: 5269-5273.
30. OHNISHI, O. 1991. Discovery of the wild ancestor of common buckwheat. Fagopyrum 11: 5-10.
31. OHNISHI, O. 1994. Buckwheat in Karakoram and the Hindkush. Fagopyrum 14: 17-25.
32. OHNISHI, O. 1995. Discovery of new Fagopyrum species and its implication for the study of evolution of Fagopyrum and the origin of cultivated buckwheat. In Proceedings of the 6th International Symposium of Buckwheat at Ina, 175-190.
33. OHNISHI, O. 1998. Search for the wild ancestor of buckwheat. I. Description of new Fagopyrum (Polygonaceae) species and their distribution in China and Himalayan hills. Fagopyrum 15: 18-28.
34. OHNISHI, O. 2000. Geographical distribution of allozymes in natural populations of wild Tartary buckwheat. Fagopyrum 17: 29-34.
35. OHNISHI, O., AND Y. MATSUOKA. 1996. Search for the wild ancestor of buckwheat II. Taxonomy of Fagopyrum (Polygonaceae) species based on morphology, isozymes and cpDNA variability. Genes and Genetic Systems 72: 383-390.
36. OHSAKO, T., AND O. OHNISHI. 1998. New Fagopyrum species revealed by morphological and molecular analyses. Genes and Genetic Systems 73: 85-94.
37. OHSAKO, T., AND O. OHNISHI. 2000. Intra-and interspecific phylogeny of wild Fagopyrum (polygonaceae) species based on nucleotide sequences of noncoding regions in chloroplast DNA. American Journal of Botany 87: 573-582.
38. OHSAKO, T., AND O. OHNISHI. 2001. Nucleotide sequence variation of the chloroplast trnKlmatK region in two wild Fagopyrum (Polygonaceae) species, F. leptopodum and F. statice. Genes and Genetic Systems 76: 39-46.
39. RAMSEY, J., AND D. W. SCHEMSKE. 1998. Pathways, mechanisms, and rates of polyploid formation in flowering plants. Annual Review of Ecological Systematics 29: 467-501.
40. ROZAS, J., AND R. ROZAS. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
41. SAITOU, N., AND M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 405-425.
42. SANG, T., D. J. CRAWFORD, AND T. F. STUESSY. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120-1136.
43. SEGRAVES, K. Á., J. N. THOMPSON, P. S. SOLTIS, AND D. E. SOLTIS. 1999. Multiple origins of polyploidy and the geographic structure of Heuchera grossulariifolia. Molecular Ecology 8: 253-262.
44. SHARMA, A. K., AND T. CHATTERJI. 1960. Chromosome studies of some members of Polygonaceae. Caryologia 13: 486-506.
45. SMALL, R. L., J. A. RYURN, R. C. CRONN, T. SEELANAN, AND J. F. WENDEL. 1998. The tortoise and the hare: choosing between noncoding plastome and nuclear ADH sequences for phylogeny reconstruction in a recently diverged plant group. American Journal of Botany 85: 1301-1315.
46. SOLTIS, D. E., P. S. SOLTIS, AND B. D. NESS. 1989. Chloroplast-DNA variation and multiple origins of autopolyploidy in Heuchera micrantha (Saxifragaceae). Evolution 43: 650-656.
47. SOLTIS, P. S., AND D. E. SOLTIS. 2000. The role of genetic and genomic attributes in the success of polyploids. Proceedings of the National Academy of Sciences, USA 97: 7051-7057.
48. STEBBINS, G. L. 1950. Variation and evolution in plants. Columbia University Press, New York, New York, USA.
49. SWOFFORD, D. L. 1999. PAUP*: phylogenetic analysis using parsimony (* and other methods). Version 4.0b4a. Sinauer. Sunderland, Massachusetts, USA.
50. TSUJI, K., AND O. OHNISHI. 2000. Origin of cultivated Tartary buckwheat (Fagopyrum tataricum Gaert.) revealed by RAPD analysis. Genetic Resources and Crop Evolution 47: 431-438.
51. TSUJI, K., AND O. OHNISHI. 2001a. Phylogenetic position of east Tibetan natural populations in Tartary buckwheat (Fagopyrum tataricum Geartn.) revealed by RAPD analysis. Genetic Resources and Crop Evolution 48: 63-67.
52. TSUJI, K., AND O. OHNISHI. 2001b. Phylogenetic relationships among wild and cultivated Tartary buckwheat (Fagopyrum tataricum Gaert.) populations revealed by AFLP analyses. Genes and Genetic Systems 76: 47-52.
53. TSUJI, K., Y. YASUI, AND O. OHNISHI. 1999. Search for Fagopyrum species in eastern Tibet. Fagopyrum 16: 1-6.
54. VAN DUK, P. J., AND T. BAKX-SCHOTMAN. 1997. Chloroplast DNA phylogeography and cytotype geography in autopolyploid Plantago media. Molecular Ecology 6: 345-352.
55. WIDMER, A., AND M. BALTISBERGER. 1999. Extensive intraspecific chloroplast DNA (cpDNA) variation in the alpine Draba aizoides L. (Brassicaceae): haplotype relationships and population structure. Molecular Ecology 8: 1405-1415.
56. WOLF, P. G., D. E. SOLTIS, AND P. S. SOLTIS. 1990. Chloroplast-DNA and allozymic variation in diploid and autotetraploid Heuchera grossulariifolia (Saxifragaceae). American Journal of Botany 77: 232-244.
57. WOO, S. H., Y. J. WANG, AND C. G. CAMPBELL. 1999. Interspecific hybrids with Fagopyrum cymosum in the genus Fagopyrum. Fagopyrum 16: 13-18.
58. XU, G. 1992. Colored illustrate of Chinese medicines. Fuzhou Scientific, Fuzhou, China (in Chinese).
59. YAMANE, K., AND O. OHNISHI. 2001. Phylogenetic relationships among natural populations of Perennial buckwheat, Fagopyrum cymosum Meisn. revealed by allozyme variations. Genetic Resources and Crop Evolution 48: 69-77.
60. YASUI, Y., AND O. OHNISHI. 1996. Comparative study of rbcL gene sequences in Fagopyrum and related taxa. Genes and Genetic Systems 71: 219-224.
61. YASUI, Y., AND O. OHNISHI. 1998a. Interspecific relationships in Fagopyrum (Polygonaceae) revealed by the nucleotide sequences of the rbcL and accD genes and their intergenetic region. American Journal of Botany 85: 1134-1142.
62. YASUI, Y., AND O. OHNISHI. 1998b. Phylogenetic relationships among Fagopyrum species revealed by nucleotide sequences of the ITS region of the nuclear rRNA gene. Genes and Genetic Systems 73: 201-210.
63. ZHOU, T.-R. 1985. Changes of natural zones in China since the beginning of Cenozoic era. In T. Liu [ed.], Quaternary geology and environment of China. 176-184. China Ocean Press, Beijing, China.
64. ZURAWSKI, G., AND M. T. CLEGG. 1987. Evolution of higher plant chloroplast DNA encoded genes: implications for structure function and phylogenetic studies. Annual Review of Plant Physiology and Plant Molecular Biology 38: 391-418.