Testing the potential of proposed DNA barcodes for species identification of Zingiberaceae

Journal of Systematics and Evolution

Volumn 49, Issue 3, 2011, Pages 261-266

  Shi, Lin Chun ^a   Zhang, Jin ^a   Han, Jian Ping ^a   Song, Jing Yuan ^a   Yao, Hui ^a   Zhu, Ying Jie ^a   Li, Jia Chun ^c   Wang, Zhen Zhong ^c   Xiao, Wei ^c   Lin, Yu Lin ^a   Xie, Cai Xiang ^a   Qian, Zhong Zhi ^b   Chen, Shi Lin ^a  

^a INSTITUTE OF MEDICINAL PLANT DEVELOPMENT   (China)

^b Chinese Pharmacopoeia Commission   (China)

^c JIANGSU KANION PHARMACEUTICAL CO   (China)

Author keywords

DNA barcoding; Identification efficiency; ITS2; Zingiberaceae

Indexed keywords

ZINGIBERACEAE;

EID: 84860420671     PISSN: 16744918     EISSN: 17596831     Source Type: Journal    
DOI: 10.1111/j.1759-6831.2011.00133.x     Document Type: Article

References (29)

1. Box MS, Rudall PJ. 2006. Floral structure and ontogeny in Globba (Zingiberaceae). Plant Systematics and Evolution 258: 107-122.
2. Burtt BL, Smith RM. 1972. Tentative keys to the subfamilies, tribes and genera of the Zingiberales. Notes from the Royal Botanic Garden Edinburgh 31: 171-176.
3. CBOL Plant Working Group. 2009. A DNA barcode for land plants. Proceedings of the National Academy of Sciences USA 106: 12 794-12 797.
4. Chen SL, Yao H, Han JP, Liu C, Song JY, Shi LC, Zhu YJ, Ma XY, Gao T, Pang XH, Luo K, Li Y, Li XW, Jia XC, Lin YL, Leon C. 2010. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLOS One 5: e8613.
5. Cho Y, Mower JP, Qiu YL, Palmer JD. 2004. Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants. Proceedings of the National Academy of Sciences USA 101: 17 741-17 746. (Pubitemid 40051957)
6. Cuenoud P, Savolainen V, Chatrou LW, Powell M, Grayer RJ, Chase MW. 2002. Molecular phylogenetics of Caryophyllales based on nuclear 18S rRNA and plastid rbcL-atpB, and matK DNA sequences. American Journal of Botany 89: 132-144. (Pubitemid 34196580)
7. Cullings KW, Vogler DR. 1998. A 5. 8S nuclear ribosomal RNA gene sequence database: Applications to ecology and evolution. Molecular Ecology 7: 919-923. (Pubitemid 28348682)
8. Hebert PDN, Cywinska A, Ball SL, deWaard JR. 2003a. Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences 270: 313-321. (Pubitemid 36228536)
9. Hebert PDN, Ratnasingham S, Dewaard JR. 2003b. Barcoding animal life: cytochrome c oxidase subunit1 divergences among closely related species. Proceedings of the Royal Society B: Biological Sciences 270 (Suppl. ): S96-S99. (Pubitemid 36960325)
10. Holttum RE. 1950. The Zingiberaceae of the Malay Peninsula. Gardener's Bulletin of Singapore 13: 1-249.
11. Keller A, Schleicher T, Schultz J, Müller T, Dandekar T, Wolf M. 2009. 5. 8S-28S rRNA interaction and HMM-based ITS2 annotation. Gene 430: 50-57.
12. KressWJ, Erickson DL. 2007. A two-locus global DNA barcode for land plants: The coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE 2: e508.
13. Kress WJ, Prince LM, Williams KJ. 2002. The phylogeny and a new classification of the gingers (Zingiberaceae): evidence from molecular data. American Journal of Botany 89: 1682-1696. (Pubitemid 35224830)
14. Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH. 2005. Use of DNA barcodes to identify flowering plants. Proceedings of the NationalAcademy of Sciences USA 102: 8369-8374. (Pubitemid 40803501)
15. Lahaye R, Savolainen V, Duthoit S, Maurin O, Van Der Bank M. 2008a. A test of psbK-psbI and atpF-atpH as potential plant DNA barcodes using the flora of the Kruger National Park as a model system (South Africa) [online]. Nature Precedings. Available from http://hdl. handle. net/10101/npre. 2008. 1896-1.
16. Lahaye R, Van Der Bank M, Bogarin D, Warner J, Pupulin F, Gigot G, Maurin O, Duthoit S, Barraclough TG, Savolainen V. 2008b. DNA barcoding the floras of biodiversity hotspots. Proceedings of the NationalAcademy of Sciences USA 105: 2923-2928. (Pubitemid 351723645)
17. Larsen K, Lock JM, Mass H, Mass PJM. 1998. The families and genera of vascular plants, Vol. 4. Berlin: Springer-Verlag. 474-495.
18. Li XS, Qin MJ. 1998. Medicinal plant resources of Zingiberaceae in china. Chinese Wild Plant Resources 17: 20-23.
19. Meyer CP, Paulay G. 2005. DNA barcoding: error rates based on comprehensive sampling. PLoS Biol 3: e422.
20. Newmaster SG, Fazekas AJ, Ragupathy S. 2006. DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach. Canadian Journal of Botany 84: 335-441.
21. Ross HA, Murugan S, Li WL. 2008. Testing the reliability of genetic methods of species identification via simulation. Systematic Biology 57: 216-230. (Pubitemid 351502942)
22. Sass C, Little DP, Stevenson DW, Specht CD. 2007. DNA barcoding in the Cycadales: Testing the potential of proposed barcoding markers for species identification of cycads. PLOS ONE 2: e1154.
23. Song JY, Yao H, Li Y, Li XW, Lin YL, Liu C, Han JP, Xie CX, Chen SL. 2009. Authentication of the family Polygonaceae in Chinese pharmacopoeia by DNA barcoding technique. Journal of Ethnopharmacology 124: 434-439.
24. Takano A, Okada H. 2002. Multiple occurrences of triploid formation in Globba (Zingiberaceae) from molecular evidence. Plant Systematics and Evolution 230: 143-159. (Pubitemid 34196743)
25. Williams KJ, Kress WJ, Paul SM. 2004. The phylogeny, evolution, and classification of the genus Globba and tribe Globbeae (Zingiberaceae): appendages do matter. American Journal of Botany 91: 100-114. (Pubitemid 38106670)
26. Wood TH, Whitten WM, Williams NH. 2000. Phylogeny of Hedychium and related genera (Zingiberaceae) based upon ITS sequence data. Edinburgh Journal of Botany 57: 261-270.
27. Wu DL, Larsen K. 2000. Flora of China. Beijing: Science Press.
28. Yao H, Song JY, Liu C, Luo K, Han JP, Li Y, Pang XH, Xu HX, Zhu YJ, Xiao PG, Chen SL. 2010. Use of ITS2 region as the universal DNA barcode for plants and animals. PLoS ONE 5: e13102.
29. Zhang JM, Wang JX, Xia T, Zhou SL. 2009. DNA barcoding: species delimitation in tree peonies. Science in China Series C: Life Sciences 52: 568-578.