Rapid diagnosis of diarrhea caused by shigella sonnei using dipsticks; comparison of rectal swabs, direct stool and stool culture

PLoS ONE

Volumn 8, Issue 11, 2013, Pages

  Duran, Claudia ^a   Nato, Faridabano ^b   Dartevelle, Sylvie ^b   Phuong, Lan Nguyen Thi ^c   Taneja, Neelam ^d   Ungeheuer, Marie Noëlle ^b   Soza, Guillermo ^e   Anderson, Leslie ^e   Benadof, Dona ^f   Zamorano, Agustín ^f   Diep, Tai The ^c   Nguyen, Truong Quang ^g   Nguyen, Vu Hoang ^g   Ottone, Catherine ^b   Bégaud, Evelyne ^b   Pahil, Sapna ^d   Prado, Valeria ^a   Sansonetti, Philippe ^b   Germani, Yves ^b  

^a UNIVERSITY OF CHILE   (Chile)

^b INSTITUT PASTEUR   (France)

^c PASTEUR INSTITUTE   (Viet Nam)

^d POSTGRADUATE INSTITUTE OF MEDICAL EDUCATION AND RESEARCH   (India)

^e Hospital Regional de Temuco   (Chile)

^f HOSPITAL ROBERTO DEL RÍO   (Chile)

^g Paediatric Hospital 1   (Viet Nam)

Author keywords

[No Author keywords available]

Indexed keywords

DIARRHEA; FECES; HUMANS; RECTUM; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SHIGELLA SONNEI;

EID: 84894269077     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0080267     Document Type: Article

References (54)

1. Gupta A, Polyak CS, Bishop RD, Sobel J, Mintz ED (2004) Laboratory-confirmed shigellosis in the United States, 1989-2002: Epidemiologic trends and patterns. Clin Infect Dis 38: 1372-1377. doi: 10.1086/386326. PubMed: 15156473. (Pubitemid 38668581)
2. Kotloff KL, Winickoff JP, Ivanoff B, Clemens JD, Swerdlow DL et al. (1999) Global burden of Shigella infections: Implications for vaccine development and implementation of control strategies. Bull World Health Organ 77: 651-666. PubMed: 10516787. (Pubitemid 29446617)
3. Levine MM, Kotloff KL, Barry EM, Pasetti MF, Sztein MB (2007) Clinical trials of Shigella vaccines: two steps forward and one step back on a long, hard road. Nat Rev Microbiol 5: 540-553. doi:10.1038/nrmicro1662. PubMed: 17558427. (Pubitemid 46925382)
4. Qu F, Bao C, Chen S, Cui E, Guo T et al. (2012) Genotypes and antimicrobial profiles of Shigella sonnei isolates from diarrheal patients circulating in Beijing between 2002 and 2007. Diagn Microbiol Infect Dis 74(2): 166-170. doi:10.1016/j.diagmicrobio.2012.06.026. PubMed: 22858547.
5. Holt KE, Baker S, Weill FX, Holmes EC, Kitchen A et al. (2012) Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nat Genet 44(9): 1056-1059. doi: 10.1038/ng.2369. PubMed: 22863732.
6. Nato F, Boutonnier A, Rajerison M, Grosjean P, Dartevelle S et al. (2003) One-Step Immunochromatographic Dipstick Tests for Rapid Detection of Vibrio cholerae O1 and O139 in Stool Samples. Clin Diagn Lab Immunol 10(3): 476-478. PubMed: 12738652. (Pubitemid 36592980)
7. Nato F, Phalipon A, Nguyen TPL, Diep TT, Sansonetti P, Germani Y (2007) Dipstick for Rapid Diagnosis of Shigella flexneri 2a in Stool. PLOS ONE. 2(4): e361. PubMed: 17440606.
8. Taneja N, Nato F, Dartevelle S, Sire JM, Garin B et al. (2011) Dipstick test for rapid diagnosis of Shigella dysenteriae 1 in bacterial cultures and its potential use on stool samples. PLOS ONE 6(10): e24830. doi: 10.1371/journal.pone.0024830. PubMed: 21984895.
9. Kenne L, Lindberg B, Petersson K, Katzenellenbogen E, Romanowaska E (1980) Structural studies of the 0-specific side-chains of the Shigella sonnei phase I lipopolysaccharide. Carbohydr Res 78: 119-126. doi:10.1016/S0008- 6215(00)83665-4.
10. Kopecko DJ, Washington O, Formal SB (1980) Genetic and physical evidence for plasmid control of Shigella sonnei form I cell surface antigen. Infect Immun 29: 207-214. PubMed: 6249756. (Pubitemid 10085997)
11. Sansonetti PJ, Kopecko DJ, Formal SB (1981) Shigella sonnei plasmids: evidence that a large plasmid is necessary for virulence. Infect Immun 34: 75-83. PubMed: 6271687. (Pubitemid 11004946)
12. Shears P (1996) Shigella infection. Ann Trop Med Parasitol 90: 105-114. PubMed: 8762400.
13. Thiem DV, Sethabutr O, von Seidlein L, Van Tung T, Gia Canh D et al. (2004) Detection of Shigella by a PCR assay targeting the ipaH gene suggests increased prevalence of shigellosis in Nha Trang. Vietnam - J Clin Microbiol 42: 2031-2035. doi:10.1128/JCM.42.5.2031-2035.2004. (Pubitemid 38637819)
14. Taylor WI, Schelhart D (1975) Effect of temperature on transport and plating media for enteric pathogens. J Clin Microbiol 2: 281-286.PubMed: 1184731.
15. Köhler G, Milstein C (1975) Continuous cultures of fused cells secreting antibody of predefined specificity. Nature 256: 495-497. doi: 10.1038/256495a0. PubMed: 1172191.
16. Barzu S, Nato F, Rouyre S, Mazie JC, Sansonetti P et al. (1993) Characterization of B-cell epitopes on IpaB, an invasion-associated antigen of Shigella flexneri: identification of an immunodominant domain recognized during natural infection. Infect Immun 6: 3825-3831. PubMed: 7689541. (Pubitemid 23260056)
17. Phalipon A, Arondel J, Nato F, Rouyre S, Mazie JC et al. (1992) Identification and characterization of B-cell epitopes of IpaC, an invasion-associated protein of Shigella flexneri. Infect Immun 60: 1919-1926. PubMed: 1373401.
18. Westphal O, Jann J (1965) Bacterial lipopolysaccharide extraction with phenolwater and further application of the procedures. Methods - Journal of Carbohydr Chem 5: 83-91.
19. Paek SH, Lee SH, Cho JH, Kim YS (2000) Development of rapid one-step immunochromatographic assay. Methods 22: 53-60. doi:10.1006/meth.2000.1036. PubMed: 11020318.
20. Bossuyt PM, Reitsma JB, Bruns DE, Gatsonis CA, Glasziou PP et al. (2003) Towards complete and accurate reporting of studies of diagnostic accuracy: The STARD initiative. Standards for Reporting of Diagnostic Accuracy. Clin Chem 49: 1-6. doi:10.1373/49.1.1. PubMed: 12507953. (Pubitemid 36078546)
21. Prado V, Lagos R, Nataro JP, San Martin O, Arellano C et al. (1999) Population-based study of the incidence of Shigella diarrhea and causative serotypes in Santiago, Chile. Pediatr Infect Dis J 18(6): 500-505. doi:10.1097/00006454-199906000-00005. PubMed: 10391178. (Pubitemid 29277612)
22. Taneja N (2007) Changing epidemiology of shigellosis and emergence of ciprofloxacin resistant Shigellae in India. J Clin Microbiol 45: 678-679. doi:10.1128/JCM.02247-06. PubMed: 17122011.
23. Germani Y, Minssart P, Vohito M, Yassibanda S, Glaziou P et al. (1998) Etiologies of acute, persistent, and dysenteric diarrheas in adults in Bangui, Central African Republic, in relation to human immunodeficiency virus serostatus. Am J Trop Med Hyg 59: 1008-1014. PubMed: 9886215. (Pubitemid 29028937)
24. Brenner DJ (1984) Recommendation on recent proposals for the classification of Shigella. Int J Syst Bacteriol 34: 87. doi: 10.1099/00207713-34-1-87.
25. Newcombe RG (1998) Two-sided confidence intervals for the single proportion: Comparison of seven methods. Stat Med 17: 857-872. doi: 10.1002/(SICI)1097-0258(19980430)17:8. PubMed: 9595616.
26. Cohen J (1960) A coefficient of agreement for nominal scales. Educ Psychol Meas 20: 37-46. doi:10.1177/001316446002000104.
27. Landis JR, Koch GG (1977) The measurement of observer agreement for categorical data. Biometrics 33: 159-174. doi:10.2307/2529310. PubMed: 843571.
28. Jaeschke R, Guyatt GH, Sackett DL (1994) Users' guides to the medical literature. III. How to use an article about a diagnostic test. B. What are the results and will they help me in caring for my patients? The Evidence-Based Medicine Working Group. JAMA 271: 703-707 (Pubitemid 24061707)
29. Glas AS, Lijmer JG, Prins MH, Bonsel GJ, Bossuyt PM (2003) The diagnostic odds ratio: A single indicator of test performance. J Clin Epidemiol 56: 1129-1135. doi:10.1016/S0895-4356(03)00177-X. PubMed: 14615004. (Pubitemid 37386338)
30. Altman DG, Bland JM (1994) Diagnostic tests 2: Predictive values. BMJ 309 (6947): 102. doi:10.1136/bmj.309.6947.102a. PubMed: 8038641. (Pubitemid 24216428)
31. McDonnell J, Dallman T, Atkin S, Turbitt DA et al. (2013) Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK. Epidemiol Infect 21: 1-8.PubMed: 23425681.
32. World Health Organisation (2005). Weekly Epidemiological Record, 80: 93-100. PubMed: 15807073
33. Ricci KA, Girosi F, Tarr PI, Lim YW, Mason C et al. (2006) Reducing stunting among children: the potential contribution of diagnostics. Nature 23 Suppl 1) (444: 29-38. PubMed: 17159892.
34. Urdea M, Penny LA, Olmsted SS, Giovanni MY, Kaspar P et al. (2006) Requirements for high impact diagnostics in the developing world. Nature 23 Suppl 1) (444: 73-79. PubMed: 17159896.
35. Frankel G, Riley L, Giron, Valmassoi J, Friedmann A et al. (1990) Detection of Shigella in feces using DNA amplification. J Infect Dis 161: 1252-1256. doi:10.1093/infdis/161.6.1252. PubMed: 2189008. (Pubitemid 20177890)
36. Gaudio PA, Sethabutr O, Echeverria P, Hoge CW (1997) Utility of a polymerase chain reaction diagnostic system in a study of the epidemiology of shigellosis among dysentery patients, family contacts, and well controls living in a shigellosis endemic area. J Infect Dis 176: 1013-1018. doi:10.1086/516531. PubMed: 9333160. (Pubitemid 27411044)
37. Houng HS, Sethabutr O, Echeverria P (1997) A simple polymerase chain reaction technique to detect and differentiate Shigella and enteroinvasive Escherichia coli in human feces. Diagn Microbiol Infect Dis 28: 19-25. doi:10.1016/S0732-8893(97)89154-7. PubMed: 9218914. (Pubitemid 27314866)
38. Islam D, Lindberg AA (1992) Detection of Shigella dysenteriae type 1 and Shigella flexneri in feces by immunomagnetic isolation and polymerase chain reaction. J Clin Microbiol 30: 2801-2806. PubMed: 1452650.
39. Islam MS, Hossain MS, Hasan MK, Rahman MM, Fuchs G et al. (1998) Detection of shigellae from stools of dysentery patients by culture and polymerase chain reaction techniques. J Diarrhoeal Dis Res 16: 248-251. PubMed: 10453122.
40. Lampel KA, Jagow JA, Trucksess M, Hill WE (1990) Polymerase chain reaction for detection of invasive Shigella flexneri in food. Appl Environ Microbiol 56: 1536-1540. PubMed: 2200336. (Pubitemid 20202107)
41. Liang SY, Watanabe H, Terajima J, Li CC, Liao JC, Tung SK (2007) Multilocus variable-number tandem-repeat analysis for molecular typing of Shigella sonnei . J Clin Microbiol 45: 3574-3580. doi:10.1128/JCM. 00675-07. PubMed: 17881552.
42. Oyofo BA, Mohran ZS, El-Etr SH, Wasfy MO, Peruski LF Jr (1996) Detection of enterotoxigenic Escherichia coli, Shigella and Campylobacter spp. by multiplex PCR assay. J Diarrhoeal Dis Res 14: 207-210. PubMed: 9019016. (Pubitemid 126763972)
43. Sethabutr O, Venkatesan M, Murphy GS, Eampokalap B, Hoge CW (1993) Detection of shigellae and enteroinvasive Escherichia coli by amplification of the invasion plasmid antigen H DNA sequence in patients with dysentery. J Infect Dis 167: 458-461. doi:10.1093/infdis/167.2.458. PubMed: 8421181. (Pubitemid 23036453)
44. Sethabutr O, Echeverria P, Hoge CW, Bodhidatta L, Pitarangsi C (1994) Detection of Shigella and enteroinvasive Escherichia coli by PCR in the stools of patients with dysentery in Thailand. J Diarrhoeal Dis Res 12: 265-269. PubMed: 7751567.
45. Villalobo E, Torres A (1998) PCR for detection of Shigella spp. in mayonnaise. Appl Environ Microbiol 64: 1242-1245. PubMed: 9546158. (Pubitemid 28188378)
46. Warren BR, Parish ME, Schneider KR (2005) Comparison of chromogenic Shigella spp. plating medium with standard media for the recovery of Shigella boydii and Shigella sonnei from tomato surfaces. J Food Prot 68: 621-624. PubMed: 15771194. (Pubitemid 40346785)
47. Ye LY, Lan FH, Zhu ZY, Chen XM, Ye XL (1993) Detection of Shigella and enteroinvasive Escherichia coli using polymerase chain reaction. J Diarrhoeal Dis Res 11: 38-40. PubMed: 8315253.
48. Hsu WB, Wang JH, Chen PC, Lu YS, Chen JH (2007) Detecting low concentrations of Shigella sonnei in environmental water samples by PCR. FEMS Microbiol Lett 270: 291-298. doi:10.1111/j.1574-6968.2007.00686.x. PubMed: 17391373.
49. Maheux AF, Picard FJ, Boissinot M, Bissonnette L, Paradis S et al. (2009) Analytical comparison of nine PCR primer sets designed to detect the presence of Escherichia coli/Shigella in water samples. Water Res 43: 3019-3028. doi:10.1016/j.watres.2009.04.017. PubMed: 19482328.
50. Theron J, Morar D, Du Preez M, Brözel VS, Venter SN (2001) A sensitive seminested PCR method for the detection of Shigella in spiked environmental water samples. Water Res 35: 869-874. doi: 10.1016/S0043-1354(00) 00348-1. PubMed: 11235881. (Pubitemid 32011191)
51. Echeverria P, Sethabutr O, Pitarangsi C (1991) Microbiology and diagnosis of infections with Shigella and enteroinvasive Escherichia coli. Rev Infect Dis 13: 220-225. doi:10.1093/clinids/13.Supplement-4.S220. PubMed: 2047641.
52. Dykman LA, Bogatyrev VA (2000) Use of the dot-immunogold assay for the rapid diagnosis of acute enteric infections. FEMS Immunol Med Microbiol 27: 135-137. doi:10.1111/j.1574-695X.2000.tb01423.x. PubMed: 10640608. (Pubitemid 30047091)
53. Szakál DD, Schneider G, Pál T (2003) A colony blot immune assay to identify enteroinvasive Escherichia coli and Shigella in stool samples. Diagn Microbiol Infect Dis 45: 165-171. doi:10.1016/S0732-8893(02)00512-6. PubMed: 12663157.
54. Sansonetti PJ, Tran Van Nhieu G, Egile C (1999) Rupture of the intestinal epithelial barrier and mucosal invasion by Shigella flexneri. Clin Infect Dis 28: 466-475. doi:10.1086/515150. PubMed: 10194063.