SCOPUS 정보 검색 플랫폼

Organic and Biomolecular Chemistry

Volumn 12, Issue 9, 2014, Pages 1495-1509

NMR elucidation of the role of Mg2+ in the structure and stability of the conserved RNA motifs of the EMCV IRES element

(4) Mohammed, Sadia a,b Phelan, Marie M a,c Rasul, Usman a,d Ramesh, Vasudevan a

a UNIVERSITY OF MANCHESTER (United Kingdom)

b C4X Discovery Ltd Unit 310 Ducie House (United Kingdom)

c UNIVERSITY OF LIVERPOOL (United Kingdom)

d NSG Environmental Ltd (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

MAGNESIUM; VIRUS RNA;

ARTICLE; CHEMISTRY; CONFORMATION; ENCEPHALOMYOCARDITIS VIRUS; NUCLEAR MAGNETIC RESONANCE; RIBOSOME;

ENCEPHALOMYOCARDITIS VIRUS; MAGNESIUM; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACID CONFORMATION; RIBOSOMES; RNA, VIRAL;

EID: 84894211678 PISSN: 14770520 EISSN: None Source Type: Journal
DOI: 10.1039/c3ob41840e Document Type: Article

Times cited : (6)

References (66)

1
- 2442672522
- K. M. Bedard B. L. Semler Microbes Infect. 2004 6 702
- (2004) Microbes Infect. , vol.6 , pp. 702
- Bedard, K.M.¹ Semler, B.L.²

2
- 0029811544
- G. J. Belsham N. Sonenberg Microbiol. Rev. 1996 60 499
- (1996) Microbiol. Rev. , vol.60 , pp. 499
- Belsham, G.J.¹ Sonenberg, N.²

3
- 0024544364
- E. V. Pilipenko V. M. Blinov L. I. Romanova A. N. Sinyakov S. V. Maslova V. I. Agol Virology 1989 168 201
- (1989) Virology , vol.168 , pp. 201
- Pilipenko, E.V.¹ Blinov, V.M.² Romanova, L.I.³ Sinyakov, A.N.⁴ Maslova, S.V.⁵ Agol, V.I.⁶

4
- 0035945235
- C. Witwer S. Rauscher I. L. Hofacker P. F. Stadler Nucleic Acids Res. 2001 29 5079
- (2001) Nucleic Acids Res. , vol.29 , pp. 5079
- Witwer, C.¹ Rauscher, S.² Hofacker, I.L.³ Stadler, P.F.⁴

5
- 0025253838
- R. J. Jackson M. T. Howell A. Kaminski Trends Biochem. Sci. 1990 15 477
- (1990) Trends Biochem. Sci. , vol.15 , pp. 477
- Jackson, R.J.¹ Howell, M.T.² Kaminski, A.³

6
- 0029437960
- R. J. Jackson A. Kaminski RNA 1995 1 985
- (1995) RNA , vol.1 , pp. 985
- Jackson, R.J.¹ Kaminski, A.²

7
- 79953721157
- N. Malys J. E. McCarthy Cell Mol. Life Sci. 2011 68 991
- (2011) Cell Mol. Life Sci. , vol.68 , pp. 991
- Malys, N.¹ McCarthy, J.E.²

8
- 75149196287
- R. J. Jackson C. U. T. Hellen T. V. Pestova Nat. Rev. Mol. Cell Biol. 2010 10 113
- (2010) Nat. Rev. Mol. Cell Biol. , vol.10 , pp. 113
- Jackson, R.J.¹ Hellen, C.U.T.² Pestova, T.V.³

9
- 42749086185
- E. Martinez-Salas Trends Microbiol. 2008 16 230
- (2008) Trends Microbiol. , vol.16 , pp. 230
- Martinez-Salas, E.¹

10
- 31044449305
- O. Fernández-Miragall R. Ramos J. Ramajo E. Martinez-Salas RNA 2006 12 223
- (2006) RNA , vol.12 , pp. 223
- Fernández-Miragall, O.¹ Ramos, R.² Ramajo, J.³ Martinez-Salas, E.⁴

11
- 79952130828
- J. Zhu A. Korostelev D. A. Costantino J. P. Donohue H. F. Noller J. S. Kieft Proc. Natl. Acad. Sci. U. S. A. 2011 108 1839
- (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 1839
- Zhu, J.¹ Korostelev, A.² Costantino, D.A.³ Donohue, J.P.⁴ Noller, H.F.⁵ Kieft, J.S.⁶

12
- 0028829213
- A. Van der Velden A. Kaminski R. J. Jackson G. J. Belsham Virology 1995 214 82
- (1995) Virology , vol.214 , pp. 82
- Van Der Velden, A.¹ Kaminski, A.² Jackson, R.J.³ Belsham, G.J.⁴

13
- 0031956963
- L. O. Roberts R. A. Seamons G. J. Belsham RNA 1998 4 520
- (1998) RNA , vol.4 , pp. 520
- Roberts, L.O.¹ Seamons, R.A.² Belsham, G.J.³

14
- 0031555658
- L. O. Roberts G. J. Belsham Virology 1997 227 53 62
- (1997) Virology , vol.227 , pp. 53-62
- Roberts, L.O.¹ Belsham, G.J.²

15
- 0032863246
- M. E. M. Robertson R. A. Seamons G. J. Belsham RNA 1999 5 1167
- (1999) RNA , vol.5 , pp. 1167
- Robertson, M.E.M.¹ Seamons, R.A.² Belsham, G.J.³

16
- 0032541157
- V. G. Kolupaeva T. V. Pestova C. U. T. Hellen I. N. Shatsky J. Biol. Chem 1998 273 18599
- (1998) J. Biol. Chem , vol.273 , pp. 18599
- Kolupaeva, V.G.¹ Pestova, T.V.² Hellen, C.U.T.³ Shatsky, I.N.⁴

17
- 10744229009
- O. Fernández-Miragall E. Martínez-Salas RNA 2003 9 1333
- (2003) RNA , vol.9 , pp. 1333
- Fernández-Miragall, O.¹ Martínez-Salas, E.²

18
- 80455168337
- N. Fernandez O. Fernandez-Miragall J. Ramajo A. Garcia-Sacristan N. Bellora E. Eyras C. Briones E. Martinez-Salas Nucleic Acids Res. 2011 39 8572
- (2011) Nucleic Acids Res. , vol.39 , pp. 8572
- Fernandez, N.¹ Fernandez-Miragall, O.² Ramajo, J.³ Garcia-Sacristan, A.⁴ Bellora, N.⁵ Eyras, E.⁶ Briones, C.⁷ Martinez-Salas, E.⁸

19
- 78650261546
- Structural analysis provides insights into the modular organization of picornavirus IRES
- N. Fernandez A. Carcia-Cacristan J. Ramajo C. Briones E. Martinez-Salas Structural analysis provides insights into the modular organization of picornavirus IRES Virology 2011 409 251
- (2011) Virology , vol.409 , pp. 251
- Fernandez, N.¹ Carcia-Cacristan, A.² Ramajo, J.³ Briones, C.⁴ Martinez-Salas, E.⁵

20
- 33144454419
- P. Martin O. Albagli M. C. Poggi K. E. Boulukos P. Pognonec BMC Biotechnol. 2006 6 4
- (2006) BMC Biotechnol. , vol.6 , pp. 4
- Martin, P.¹ Albagli, O.² Poggi, M.C.³ Boulukos, K.E.⁴ Pognonec, P.⁵

21
- 3042819538
- S. M. Ngoi A. C. Chien C. G. L. Lee Curr. Gene Ther. 2004 4 15
- (2004) Curr. Gene Ther. , vol.4 , pp. 15
- Ngoi, S.M.¹ Chien, A.C.² Lee, C.G.L.³

22
- 20544448001
- D. E. Draper D. Grilley A. M. Soto Annu. Rev. Biophys. Biomol. Struct. 2005 34 221
- (2005) Annu. Rev. Biophys. Biomol. Struct. , vol.34 , pp. 221
- Draper, D.E.¹ Grilley, D.² Soto, A.M.³

23
- 78751562445
- A. S. Petrov J. C. Bowman S. C. Harvey L. D. Williams RNA 2011 17 291
- (2011) RNA , vol.17 , pp. 291
- Petrov, A.S.¹ Bowman, J.C.² Harvey, S.C.³ Williams, L.D.⁴

24
- 0032419499
- V. K. Misra D. E. Draper Biopolymers 2000 48 113
- (2000) Biopolymers , vol.48 , pp. 113
- Misra, V.K.¹ Draper, D.E.²

25
- 0034655642
- H. Robinson Y. Gao R. Sanishvili A. Joachimiak A. H. J. Wang Nucleic Acids Res. 2000 28 1760
- (2000) Nucleic Acids Res. , vol.28 , pp. 1760
- Robinson, H.¹ Gao, Y.² Sanishvili, R.³ Joachimiak, A.⁴ Wang, A.H.J.⁵

26
- 0030929889
- J. H. Cate R. L. Hanna J. A. Doudna Nature Struct. Biol. 1997 4 553
- (1997) Nature Struct. Biol. , vol.4 , pp. 553
- Cate, J.H.¹ Hanna, R.L.² Doudna, J.A.³

27
- 22444437410
- J. H. Davis M. Tonelli L. G. Scott L. Jaeger J. R. Williamson S. E. Butcher J. Mol. Biol. 2005 351 371
- (2005) J. Mol. Biol. , vol.351 , pp. 371
- Davis, J.H.¹ Tonelli, M.² Scott, L.G.³ Jaeger, L.⁴ Williamson, J.R.⁵ Butcher, S.E.⁶

28
- 33845874649
- J. H. Davis T. R. Foster M. Tonelli S. E. Butcher RNA 2007 13 76
- (2007) RNA , vol.13 , pp. 76
- Davis, J.H.¹ Foster, T.R.² Tonelli, M.³ Butcher, S.E.⁴

29
- 24744459633
- M. P. Latham D. J. Brown S. A. McCallum A. Pardi ChemBioChem 2005 6 1492
- (2005) ChemBioChem , vol.6 , pp. 1492
- Latham, M.P.¹ Brown, D.J.² McCallum, S.A.³ Pardi, A.⁴

30
- 17144452674
- B. Furtig C. Richter J. Wohnert H. Schwalbe ChemBiochem. 2003 4 936
- (2003) ChemBiochem. , vol.4 , pp. 936
- Furtig, B.¹ Richter, C.² Wohnert, J.³ Schwalbe, H.⁴

31
- 0344628782
- P. J. Lukavsky I. Kim G. A. Otto J. D. Puglisi Nat. Struct. Biol. 2003 10 1033
- (2003) Nat. Struct. Biol. , vol.10 , pp. 1033
- Lukavsky, P.J.¹ Kim, I.² Otto, G.A.³ Puglisi, J.D.⁴

32
- 0347753822
- B. N. M. van Buuren J. Schleucher V. Wittmann C. Griesinger H. Schwalbe S. S. Wijmenga Angew. Chem. 2004 43 187
- (2004) Angew. Chem. , vol.43 , pp. 187
- Van Buuren, B.N.M.¹ Schleucher, J.² Wittmann, V.³ Griesinger, C.⁴ Schwalbe, H.⁵ Wijmenga, S.S.⁶

33
- 84877306469
- J. King C. Shammas M. Nareen M. Lelli V. Ramesh Org. Biomol. Chem. 2013 11 3382
- (2013) Org. Biomol. Chem. , vol.11 , pp. 3382
- King, J.¹ Shammas, C.² Nareen, M.³ Lelli, M.⁴ Ramesh, V.⁵

34
- 4444253828
- M. Phelan R. J. Banks G. Conn V. Ramesh Nucleic Acids Res. 2004 32 4715
- (2004) Nucleic Acids Res. , vol.32 , pp. 4715
- Phelan, M.¹ Banks, R.J.² Conn, G.³ Ramesh, V.⁴

35
- 84894220532
- PhD thesis, The University of Manchester, Manchester, U.K.
- M. Phelan, PhD thesis, The University of Manchester, Manchester, U.K., 2007
- (2007)
- Phelan, M.¹

36
- 0030156432
- G. Varani F. Abdoul-ela F. H.-T. Allain Prog. Nucl. Magn. Reson. Spectrosc. 1996 29 51
- (1996) Prog. Nucl. Magn. Reson. Spectrosc. , vol.29 , pp. 51
- Varani, G.¹ Abdoul-Ela, F.² Allain, F.H.-T.³

37
- 33747315059
- J. Flinders T. Dieckmann Prog. Nucl. Magn. Reson. Spectrosc. 2006 48 137
- (2006) Prog. Nucl. Magn. Reson. Spectrosc. , vol.48 , pp. 137
- Flinders, J.¹ Dieckmann, T.²

38
- 0026423027
- H. A. Heus A. Pardi Science 1991 253 191
- (1991) Science , vol.253 , pp. 191
- Heus, H.A.¹ Pardi, A.²

39
- 84894206144
- PhD thesis, The University of Manchester, Manchester, U.K.
- S. Mohammed, PhD thesis, The University of Manchester, Manchester, U.K., 2012
- (2012)
- Mohammed, S.¹

40
- 0027982498
- M. Katahira M. Kanagawa H. Sato S. Uesugi S. Fujii T. Kohno T. Maeda Nucleic Acids Res. 1994 22 2752
- (1994) Nucleic Acids Res. , vol.22 , pp. 2752
- Katahira, M.¹ Kanagawa, M.² Sato, H.³ Uesugi, S.⁴ Fujii, S.⁵ Kohno, T.⁶ Maeda, T.⁷

41
- 69849114530
- C. L. Zirbel J. E. Sponer J. Sponer J. Stombaugh N. B. Leontis Nucleic Acids Res. 2009 37 4898
- (2009) Nucleic Acids Res. , vol.37 , pp. 4898
- Zirbel, C.L.¹ Sponer, J.E.² Sponer, J.³ Stombaugh, J.⁴ Leontis, N.B.⁵

42
- 0029283999
- F. M. Jucker A. Pardi RNA 1995 1 219
- (1995) RNA , vol.1 , pp. 219
- Jucker, F.M.¹ Pardi, A.²

43
- 0033971758
- U. Nagaswamy N. Voss Z. Zhang G. E. Fox Nucleic Acids Res. 2000 28 375
- (2000) Nucleic Acids Res. , vol.28 , pp. 375
- Nagaswamy, U.¹ Voss, N.² Zhang, Z.³ Fox, G.E.⁴

44
- 78649986714
- C. Geary A. Chworos L. Jaeger Nucleic Acids Res. 2011 39 1066
- (2011) Nucleic Acids Res. , vol.39 , pp. 1066
- Geary, C.¹ Chworos, A.² Jaeger, L.³

45
- 84894111071
- Ribotask calculator
- Ribotask calculator: http://www.ribotask.com/calculator.asp?PageID=40

46
- 0001909564
- M. Liu X. Mao C. Ye H. Huang J. Nicholson J. Lindon J. Magn. Reson. 1998 132 125
- (1998) J. Magn. Reson. , vol.132 , pp. 125
- Liu, M.¹ Mao, X.² Ye, C.³ Huang, H.⁴ Nicholson, J.⁵ Lindon, J.⁶

47
- 0000370821
- D. I. Hoult J. Magn. Reson. 1976 21 337
- (1976) J. Magn. Reson. , vol.21 , pp. 337
- Hoult, D.I.¹

48
- 48549112001
- G. Bodenhausen H. Kogler R. R. Ernst J. Magn. Reson. 1984 58 370
- (1984) J. Magn. Reson. , vol.58 , pp. 370
- Bodenhausen, G.¹ Kogler, H.² Ernst, R.R.³

49
- 5144233105
- A. Bax D. G. Davis J. Magn. Reson. 1985 65 355
- (1985) J. Magn. Reson. , vol.65 , pp. 355
- Bax, A.¹ Davis, D.G.²

50
- 0035861068
- 31P
- 31P J. Am. Chem. Soc. 2001 123 11306
- (2001) J. Am. Chem. Soc. , vol.123 , pp. 11306
- Luy, B.¹ Marino, J.P.²

51
- 84894139123
- http://www.umanitoba.ca/chemistry/nmr/spinworks/

52
- 0029400480
- F. Delaglio S. Grzesiek G. Vuister G. Zhu J. Pfiefer A. Bax J. Biomol. NMR 1995 6 277
- (1995) J. Biomol. NMR , vol.6 , pp. 277
- Delaglio, F.¹ Grzesiek, S.² Vuister, G.³ Zhu, G.⁴ Pfiefer, J.⁵ Bax, A.⁶

53
- 0004040543
- University of California, San Francisco
- T. D. Goddard and D. G. Kneller, SPARKY 3, University of California, San Francisco, 2004
- (2004) SPARKY 3
- Goddard, T.D.¹ Kneller, D.G.²

54
- 19444382397
- W. Vranken W. Boucher T. Stevens R. Fogh A. Pajon M. Llinas E. Ulrich J. Markley J. Ionides E. Laue Proteins: Struct. Funct. Bioinf. 2005 59 4 687
- (2005) Proteins: Struct. Funct. Bioinf. , vol.59 , Issue.4 , pp. 687
- Vranken, W.¹ Boucher, W.² Stevens, T.³ Fogh, R.⁴ Pajon, A.⁵ Llinas, M.⁶ Ulrich, E.⁷ Markley, J.⁸ Ionides, J.⁹ Laue, E.¹⁰

55
- 0029878720
- VMD-Visual Molecular Dynamics
- W. Humphrey A. Dalke K. Schulten VMD-Visual Molecular Dynamics J. Mol. Graph. 1996 14 33
- (1996) J. Mol. Graph. , vol.14 , pp. 33
- Humphrey, W.¹ Dalke, A.² Schulten, K.³

56
- 4444221565
- E. F. Pettersen T. D. Goddard C. C. Huang G. S. Couch D. M. Greenblatt E. C. Meng T. E. Ferrin J. Comput. Chem. 2004 25 1605
- (2004) J. Comput. Chem. , vol.25 , pp. 1605
- Pettersen, E.F.¹ Goddard, T.D.² Huang, C.C.³ Couch, G.S.⁴ Greenblatt, D.M.⁵ Meng, E.C.⁶ Ferrin, T.E.⁷

57
- 79954580509
- Schrödinger
- The PyMOL Molecular Graphics System, Version 1.2r3pre, Schrödinger
- The PyMOL Molecular Graphics System, Version 1.2r3pre

58
- 0039457219
- M. Rance O. W. Sorensen G. Bodenhausen G. Wagner R. R. Ernst K. Wuthrich Biochem. Biophys. Res. Commun. 1983 117 479
- (1983) Biochem. Biophys. Res. Commun. , vol.117 , pp. 479
- Rance, M.¹ Sorensen, O.W.² Bodenhausen, G.³ Wagner, G.⁴ Ernst, R.R.⁵ Wuthrich, K.⁶

59
- 33644757144
- A. Bax R. H. Griffey B. L. Hawkins J. Magn. Reson. 1983 55 301
- (1983) J. Magn. Reson. , vol.55 , pp. 301
- Bax, A.¹ Griffey, R.H.² Hawkins, B.L.³

60
- 0032795253
- J. P. Marino H. Schwalbe C. Griesinger Acc. Chem. Res. 1999 32 614
- (1999) Acc. Chem. Res. , vol.32 , pp. 614
- Marino, J.P.¹ Schwalbe, H.² Griesinger, C.³

61
- 0013293280
- C. Schwieters J. Kuszewski N. Tjandra G. M. Clore J. Magn. Reson. 2003 160 65
- (2003) J. Magn. Reson. , vol.160 , pp. 65
- Schwieters, C.¹ Kuszewski, J.² Tjandra, N.³ Clore, G.M.⁴

62
- 33645868288
- C. Schwieters J. Kuszewski G. M. Clore Prog. Nucl. Magn. Reson. Spectrosc. 2006 48 47
- (2006) Prog. Nucl. Magn. Reson. Spectrosc. , vol.48 , pp. 47
- Schwieters, C.¹ Kuszewski, J.² Clore, G.M.³

63
- 0000286998
- J. L. Markley A. Bax Y. Arata C. W. Hilbers R. Keptein B. D. Sykes P. E. Wright K. Wuthrich Pure Appl. Chem. 1998 70 117
- (1998) Pure Appl. Chem. , vol.70 , pp. 117
- Markley, J.L.¹ Bax, A.² Arata, Y.³ Hilbers, C.W.⁴ Keptein, R.⁵ Sykes, B.D.⁶ Wright, P.E.⁷ Wuthrich, K.⁸

64
- 34547592557
- W. Davis A. Leaver-Fay V. B. Chen J. N. Block G. J. Kapral X. Wang L. W. Murray W. B. Arendall III J. Snoeyink J. S. Richardson D. C. Richardson Nucleic Acids Res. 2007 35 W375
- (2007) Nucleic Acids Res. , vol.35 , pp. 375
- Davis, W.¹ Leaver-Fay, A.² Chen, V.B.³ Block, J.N.⁴ Kapral, G.J.⁵ Wang, X.⁶ Murray, L.W.⁷ Arendall III, W.B.⁸ Snoeyink, J.⁹ Richardson, J.S.¹⁰ Richardson, D.C.¹¹

65
- 67849122319
- G. Zheng X. Lu W. Olson Nucleic Acids Res. 2009 37 W240
- (2009) Nucleic Acids Res. , vol.37 , pp. 240
- Zheng, G.¹ Lu, X.² Olson, W.³

66
- 79959930132
- C. Blanchet M. Pasi K. Zakrzewska R. Lavery Nucleic Acids Res. 2011 39 W68
- (2011) Nucleic Acids Res. , vol.39 , pp. 68
- Blanchet, C.¹ Pasi, M.² Zakrzewska, K.³ Lavery, R.⁴

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.