Improving the specific activity of β-mannanase from Aspergillus niger BK01 by structure-based rational design

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1844, Issue 3, 2014, Pages 663-669

  Huang, Jian Wen ^a   Chen, Chun Chi ^b   Huang, Chun Hsiang ^b   Huang, Ting Yung ^c,d   Wu, Tzu Hui ^a   Cheng, Ya Shan ^c,d   Ko, Tzu Ping ^e   Lin, Cheng Yen ^c,d   Liu, Je Ruei ^a,f   Guo, Rey Ting ^b  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b Chinese Academy of Sciences   (China)

^c Genozyme Biotechnology Inc   (Taiwan)

^d AsiaPac Biotechnology Co Ltd   (China)

^e INSTITUTE OF BIOLOGICAL CHEMISTRY   (Taiwan)

^f AGRICULTURAL BIOTECHNOLOGY RESEARCH CENTER   (Taiwan)

Author keywords

Mannanase; Aspergillus niger; Crystal structure; Rational design; Thermophilic

Indexed keywords

ASPERGILLUS NIGER; CRYSTAL STRUCTURE; RATIONAL DESIGN; THERMOPHILIC; Β-MANNANASE;

AMINO ACID SEQUENCE; ASPERGILLUS NIGER; BETA-MANNOSIDASE; ENZYME STABILITY; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 84894136466     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2014.01.011     Document Type: Article

References (42)

1. S. Dhawan, and J. Kaur Microbial mannanases: an overview of production and applications Crit. Rev. Biotechnol. 27 2007 197 216
2. H.V. Scheller, and P. Ulvskov Hemicelluloses Annu. Rev. Plant Biol. 61 2010 263 289
3. M. Daskiran, R.G. Teeter, D. Fodge, and H.Y. Hsiao An evaluation of endo-beta-D-mannanase (Hemicell) effects on broiler performance and energy use in diets varying in beta-mannan content Poult. Sci. 83 2004 662 668
4. G. Gubitz, T. Lischnig, D. Stebbing, and J. Saddler Enzymatic removal of hemicellulose from dissolving pulps Biotechnol. Lett. 19 1997 491 495
5. A. Sachslehner, G. Foidl, N. Foidl, G. Gubitz, and D. Haltrich Hydrolysis of isolated coffee mannan and coffee extract by mannanases of Sclerotium rolfsii J. Biotechnol. 80 2000 127 134
6. H.J. Gilbert, H. Stalbrand, and H. Brumer How the walls come crumbling down: recent structural biochemistry of plant polysaccharide degradation Curr. Opin. Plant Biol. 11 2008 338 348
7. F.H. Al-Ghazzewi, and R.F. Tester Efficacy of cellulase and mannanase hydrolysates of konjac glucomannan to promote the growth of lactic acid bacteria J. Sci. Food Agric. 92 2012 2394 2396
8. W. Luo, J.-W. Huang, C.-H. Huang, T.-Y. Huang, H.-C. Chan, J.-R. Liu, R.-T. Guo, and C.-C. Chen Preliminary X-ray diffraction analysis of thermostable β-1,4-mannanase from Aspergillus niger BK01 Acta Crystallogr. F 69 2014 1100 1101
9. M.E. Setati, P. Ademark, W.H. van Zyl, B. Hahn-Hagerdal, and H. Stalbrand Expression of the Aspergillus aculeatus endo-beta-1,4-mannanase encoding gene (man1) in Saccharomyces cerevisiae and characterization of the recombinant enzyme Protein Expr. Purif. 21 2001 105 114
10. V. Puchart, M. Vršanská, P. Svoboda, J. Pohl, Z.B. Ögel, and P. Biely Purification and characterization of two forms of endo-b-1,4-mannanase from a thermotolerant fungus, Aspergillus fumigatus IMI 385708 (formerly Thermomyces lanuginosus IMI 158749) Biochim. Biophys. Acta 1674 2004 239 250
11. H. Lu, H. Luo, P. Shi, H. Huang, K. Meng, P. Yang, and B. Yao A novel thermophilic endo-beta-1,4-mannanase from Aspergillus nidulans XZ3: functional roles of carbohydrate-binding module and Thr/Ser-rich linker region Appl. Microbiol. Biotechnol. 2013 10.1007/s00253-013-5112-6
12. J.F. Li, S.G. Zhao, C.D. Tang, J.Q. Wang, and M.C. Wu Cloning and functional expression of an acidophilic beta-mannanase gene (Anman5A) from Aspergillus niger LW-1 in Pichia pastoris J. Agric. Food Chem. 60 2012 765 773
13. N.V. Kote, A.G. Patil, and V.H. Mulimani Optimization of the production of thermostable endo-beta-1,4 mannanases from a newly isolated Aspergillus niger gr and Aspergillus flavus gr Appl. Biochem. Biotechnol. 152 2009 213 223
14. G. Duruksu, B. Ozturk, P. Biely, U. Bakir, and Z.B. Ogel Cloning, expression and characterization of endo-b-1,4-mannanase from Aspergillus fumigatus in Aspergillus sojae and Pichia pastoris Biotechnol. Prog. 25 2009 271 276
15. A. Dilokpimol, H. Nakai, C.H. Gotfredsen, M.J. Baumann, N. Nakai, M. Abou Hachem, and B. Svensson Recombinant production and characterisation of two related GH5 endo-beta-1,4-mannanases from Aspergillus nidulans FGSC A4 showing distinctly different transglycosylation capacity Biochim. Biophys. Acta 1814 2011 1720 1729
16. X. Chen, Y. Cao, Y. Ding, W. Lu, and D. Li Cloning, functional expression and characterization of Aspergillus sulphureus beta-mannanase in Pichia pastoris J. Biotechnol. 128 2007 452 461
17. D. Bien-Cuong, D. Thi-Thu, J.-G. Berrin, D. Haltrich, T. Kim-Anh, J.-C. Sigoillot, and M. Yamabhai Cloning, expression in Pichia pastoris, and characterization of a thermostable GH5 mannan endo-1,4-β-mannosidase from Aspergillus niger BK01 Microb. Cell Factories 8 2009 59
18. P.S. Chauhan, N. Puri, P. Sharma, and N. Gupta Mannanases: microbial sources, production, properties and potential biotechnological applications Appl. Microbiol. Biotechnol. 93 2012 1817 1830
19. Y. Li, F. Hu, X. Wang, H. Cao, D. Liu, and D. Yao A rational design for trypsin-resistant improvement of Armillariella tabescens beta-mannanase MAN47 based on molecular structure evaluation J. Biotechnol. 163 2013 401 407
20. Y.-S. Cheng, T.-P. Ko, J.-W. Huang, T.-H. Wu, C.-Y. Lin, W. Luo, Q. Li, Y. Ma, C.-H. Huang, A.H.J. Wang, J.-R. Liu, and R.-T. Guo Enhanced activity of Thermotoga maritima cellulase 12A by mutating a unique surface loop Appl. Microbiol. Biotechnol. 95 2011 661 669
21. Y.-S. Cheng, T.-P. Ko, T.-H. Wu, Y. Ma, C.-H. Huang, H.-L. Lai, A.H.J. Wang, J.-R. Liu, and R.-T. Guo Crystal structure and substrate-binding mode of cellulase 12A from Thermotoga maritima Proteins 79 2011 1193 1204
22. J.-W. Huang, Y.-S. Cheng, T.-P. Ko, C.-Y. Lin, H.-L. Lai, C.-C. Chen, Y. Ma, Y. Zheng, C.-H. Huang, P. Zou, J.-R. Liu, and R.-T. Guo Rational design to improve thermostability and specific activity of the truncated Fibrobacter succinogenes 1,3-1,4-β-d-glucanase Appl. Microbiol. Biotechnol. 94 2011 111 121
23. E. Sabini, H. Schubert, G. Murshudov, K.S. Wilson, M. Siika-Aho, and M. Penttila The three-dimensional structure of a Trichoderma reesei beta-mannanase from glycoside hydrolase family 5 Acta Crystallogr. D Biol. Crystallogr. 56 2000 3 13
24. A.M. Larsson, L. Anderson, B. Xu, I.G. Munoz, I. Uson, J.C. Janson, H. Stalbrand, and J. Stahlberg Three-dimensional crystal structure and enzymic characterization of beta-mannanase Man5A from blue mussel Mytilus edulis J. Mol. Biol. 357 2006 1500 1510
25. R. Bourgault, A.J. Oakley, J.D. Bewley, and M.C. Wilce Three-dimensional structure of (1,4)-beta-D-mannan mannanohydrolase from tomato fruit Protein Sci. 14 2005 1233 1241
26. K. Mizutani, S. Tsuchiya, M. Toyoda, Y. Nanbu, K. Tominaga, K. Yuasa, N. Takahashi, A. Tsuji, and B. Mikami Structure of beta-1,4-mannanase from the common sea hare Aplysia kurodai at 1.05 A resolution Acta Crystallogr. F Struct. Biol. Cryst. Commun. 68 2012 1164 1168
27. A.M. Goncalves, C.S. Silva, T.I. Madeira, R. Coelho, D. de Sanctis, M.V. San Romao, and I. Bento Endo-beta-D-1,4-mannanase from Chrysonilia sitophila displays a novel loop arrangement for substrate selectivity Acta Crystallogr. D Biol. Crystallogr. 68 2012 1468 1478
28. M. Couturier, A. Roussel, A. Rosengren, P. Leone, H. Stalbrand, and J.G. Berrin Structural and biochemical analyses of glycoside hydrolase families 5 and 26 beta-(1,4)-mannanases from Podospora anserina reveal differences upon manno-oligosaccharide catalysis J. Biol. Chem. 288 2013 14624 14635
29. J. Sakon, W.S. Adney, M.E. Himmel, S.R. Thomas, and P.A. Karplus Crystal structure of thermostable family 5 endocellulase E1 from Acidothermus cellulolyticus in complex with cellotetraose Biochemistry 35 1996 10648 10660
30. Z. Otwinowski, and W. Minor [20] Processing of X-ray diffraction data collected in oscillation mode Charles W. Carter Jr. Methods in Enzymology vol. 276 1997 Academic Press 307 326
31. A.T. Brunger, P.D. Adams, G.M. Clore, W.L. DeLano, P. Gros, R.W. Grosse-Kunstleve, J.S. Jiang, J. Kuszewski, M. Nilges, N.S. Pannu, R.J. Read, L.M. Rice, T. Simonson, and G.L. Warren Crystallography & NMR system: a new software suite for macromolecular structure determination Acta Crystallogr. D Biol. Crystallogr. 54 1998 905 921
32. P. Emsley, B. Lohkamp, W.G. Scott, and K. Cowtan Features and development of Coot Acta Crystallogr. D Biol. Crystallogr. 66 2010 486 501
33. G.L. Miller Use of dinitrosalicylic acid reagent for determination of reducing sugar Anal. Chem. 31 1959 426 428
34. T.-H. Wu, C.-H. Huang, T.-P. Ko, H.-L. Lai, Y. Ma, C.-C. Chen, Y.-S. Cheng, J.-R. Liu, and R.-T. Guo Diverse substrate recognition mechanism revealed by Thermotoga maritima Cel5A structures in complex with cellotetraose, cellobiose and mannotriose Biochim. Biophys. Acta Proteins Proteomics 1814 2011 1832 1840
35. G.T. Beckham, Z. Dai, J.F. Matthews, M. Momany, C.M. Payne, W.S. Adney, S.E. Baker, and M.E. Himmel Harnessing glycosylation to improve cellulase activity Curr. Opin. Biotechnol. 23 2012 338 345
36. D. Skropeta The effect of individual N-glycans on enzyme activity Bioorg. Med. Chem. 17 2009 2645 2653
37. L.J. Perry, and R. Wetzel Disulfide bond engineered into T4 lysozyme: stabilization of the protein toward thermal inactivation Science (New York, N.Y.) 226 1984 555 557
38. A. Rosengren, P. Hägglund, L. Anderson, P. Pavon-Orozco, R. Peterson-Wulff, W. Nerinckx, and H. Stålbrand The role of subsite + 2 of the Trichoderma reesei β-mannanase TrMan5A in hydrolysis and transglycosylation Biocatal. Biotransformation 30 2012 338 352
39. F.M. Dias, F. Vincent, G. Pell, J.A. Prates, M.S. Centeno, L.E. Tailford, L.M. Ferreira, C.M. Fontes, G.J. Davies, and H.J. Gilbert Insights into the molecular determinants of substrate specificity in glycoside hydrolase family 5 revealed by the crystal structure and kinetics of Cellvibrio mixtus mannosidase 5A J. Biol. Chem. 279 2004 25517 25526
40. M. Hilge, S.M. Gloor, W. Rypniewski, O. Sauer, T.D. Heightman, W. Zimmermann, K. Winterhalter, and K. Piontek High-resolution native and complex structures of thermostable beta-mannanase from Thermomonospora fusca - substrate specificity in glycosyl hydrolase family 5 Structure 6 1998 1433 1444
41. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 1997 4876 4882
42. P. Gouet, X. Robert, and E. Courcelle ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins Nucleic Acids Res. 31 2003 3320 3323