-
1
-
-
0037382643
-
Looking at mRNA decay pathways through the window of molecular evolution
-
DOI 10.1016/S0959-437X(03)00014-5
-
Culbertson MR, Leeds PF (2003) Looking at mRNA decay pathways through the window of molecular evolution. Curr Opin Genet Dev 13: 207-214. (Pubitemid 36369746)
-
(2003)
Current Opinion in Genetics and Development
, vol.13
, Issue.2
, pp. 207-214
-
-
Culbertson, M.R.1
Leeds, P.F.2
-
2
-
-
0025786141
-
The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon
-
Leeds P, Peltz SW, Jacobson A, Culbertson MR (1991) The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon. Genes Dev 5: 2303-2314.
-
(1991)
Genes Dev
, vol.5
, pp. 2303-2314
-
-
Leeds, P.1
Peltz, S.W.2
Jacobson, A.3
Culbertson, M.R.4
-
3
-
-
0026773782
-
Gene products that promote mRNA turnover in Saccharomyces cerevisiae
-
Leeds P, Wood JM, Lee BS, Culbertson MR (1992) Gene products that promote mRNA turnover in Saccharomyces cerevisiae. Mol Cell Biol 12: 2165-2177.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 2165-2177
-
-
Leeds, P.1
Wood, J.M.2
Lee, B.S.3
Culbertson, M.R.4
-
4
-
-
37849005006
-
NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity
-
Chamieh H, Ballut L, Bonneau F, Le Hir H (2008) NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity. Nat Struct Mol Biol 15: 85-93.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 85-93
-
-
Chamieh, H.1
Ballut, L.2
Bonneau, F.3
Le Hir, H.4
-
5
-
-
2642656314
-
The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs
-
Czaplinski K, Ruiz-Echevarria MJ, Paushkin SV, Han X, Weng Y, et al. (1998) The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs. Genes Dev 12: 1665-1677. (Pubitemid 28299517)
-
(1998)
Genes and Development
, vol.12
, Issue.11
, pp. 1665-1677
-
-
Czaplinski, K.1
Ruiz-Echevarria, M.J.2
Paushkin, S.V.3
Han, X.4
Weng, Y.5
Perlick, H.A.6
Dietz, H.C.7
Ter-Avanesyan, M.D.8
Peltz, S.W.9
-
6
-
-
0031025296
-
Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway
-
He F, Brown AH, Jacobson A (1997) Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway. Mol Cell Biol 17: 1580-1594. (Pubitemid 27097388)
-
(1997)
Molecular and Cellular Biology
, vol.17
, Issue.3
, pp. 1580-1594
-
-
He, F.1
Brown, A.H.2
Jacobson, A.3
-
7
-
-
0029006870
-
The majority of yeast UPF1 co-localizes with polyribosomes in the cytoplasm
-
Atkin AL, Altamura N, Leeds P, Culbertson MR (1995) The majority of yeast UPF1 co-localizes with polyribosomes in the cytoplasm. Mol Biol Cell 6: 611-625.
-
(1995)
Mol Biol Cell
, vol.6
, pp. 611-625
-
-
Atkin, A.L.1
Altamura, N.2
Leeds, P.3
Culbertson, M.R.4
-
8
-
-
0035865408
-
The role of Upf proteins in modulating the translation read-through of nonsense-containing transcripts
-
DOI 10.1093/emboj/20.4.880
-
Wang W, Czaplinski K, Rao Y, Peltz SW (2001) The role of Upf proteins in modulating the translation read-through of nonsense-containing transcripts. Embo J 20: 880-890. (Pubitemid 32167652)
-
(2001)
EMBO Journal
, vol.20
, Issue.4
, pp. 880-890
-
-
Wang, W.1
Czaplinski, K.2
Rao, Y.3
Peltz, S.W.4
-
9
-
-
0030826508
-
Relationship between yeast polyribosomes and Upf proteins required for nonsense mRNA decay
-
DOI 10.1074/jbc.272.35.22163
-
Atkin AL, Schenkman LR, Eastham M, Dahlseid JN, Lelivelt MJ, et al. (1997) Relationship between yeast polyribosomes and Upf proteins required for nonsense mRNA decay. J Biol Chem 272: 22163-22172. (Pubitemid 27382846)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.35
, pp. 22163-22172
-
-
Atkin, A.L.1
Schenkman, L.R.2
Eastham, M.3
Dahlseid, J.N.4
Lelivelt, M.J.5
Culbertson, M.R.6
-
10
-
-
80055122225
-
Interactions between Upf1 and the decapping factors Edc3 and Pat1 in Saccharomyces cerevisiae
-
Swisher KD, Parker R (2011) Interactions between Upf1 and the decapping factors Edc3 and Pat1 in Saccharomyces cerevisiae. PLoS One 6: e26547.
-
(2011)
PLoS One
, vol.6
-
-
Swisher, K.D.1
Parker, R.2
-
11
-
-
84880695650
-
Yeast Upf1 CH domain interacts with Rps26 of the 40S ribosomal subunit
-
Min EE, Roy B, Amrani N, He F, Jacobson A (2013) Yeast Upf1 CH domain interacts with Rps26 of the 40S ribosomal subunit. Rna 19: 1105-1115.
-
(2013)
Rna
, vol.19
, pp. 1105-1115
-
-
Min, E.E.1
Roy, B.2
Amrani, N.3
He, F.4
Jacobson, A.5
-
12
-
-
0037762554
-
An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3′>5′ degradation
-
DOI 10.1016/S1097-2765(03)00190-4
-
Mitchell P, Tollervey D (2003) An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3′ - >5′ degradation. Mol Cell 11: 1405-1413. (Pubitemid 36645158)
-
(2003)
Molecular Cell
, vol.11
, Issue.5
, pp. 1405-1413
-
-
Mitchell, P.1
Tollervey, D.2
-
13
-
-
33751375141
-
Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast
-
Guan Q, Zheng W, Tang S, Liu X, Zinkel RA, et al. (2006) Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast. PLoS Genet 2: e203.
-
(2006)
PLoS Genet
, vol.2
-
-
Guan, Q.1
Zheng, W.2
Tang, S.3
Liu, X.4
Zinkel, R.A.5
-
14
-
-
27644520989
-
Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay
-
DOI 10.1016/j.molcel.2005.09.019, PII S1097276505016400
-
Gaba A, Jacobson A, Sachs MS (2005) Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay. Mol Cell 20: 449-460. (Pubitemid 41572301)
-
(2005)
Molecular Cell
, vol.20
, Issue.3
, pp. 449-460
-
-
Gaba, A.1
Jacobson, A.2
Sachs, M.S.3
-
15
-
-
0033229867
-
An internal open reading frame triggers nonsense-mediated decay of the yeast SPT10 mRNA
-
DOI 10.1093/emboj/18.21.6134
-
Welch EM, Jacobson A (1999) An internal open reading frame triggers nonsense-mediated decay of the yeast SPT10 mRNA. Embo J 18: 6134-6145. (Pubitemid 29515688)
-
(1999)
EMBO Journal
, vol.18
, Issue.21
, pp. 6134-6145
-
-
Welch, E.M.1
Jacobson, A.2
-
16
-
-
66249097064
-
Long 3′-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae
-
Kebaara BW, Atkin AL (2009) Long 3′-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae. Nucleic Acids Res 37: 2771-2778.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2771-2778
-
-
Kebaara, B.W.1
Atkin, A.L.2
-
17
-
-
0032880399
-
Aberrant mRNAs with extended 3' UTRs are substrates for rapid degradation by mRNA surveillance
-
DOI 10.1017/S1355838299990829
-
Muhlrad D, Parker R (1999) Aberrant mRNAs with extended 3′ UTRs are substrates for rapid degradation by mRNA surveillance. Rna 5: 1299-1307. (Pubitemid 29489812)
-
(1999)
RNA
, vol.5
, Issue.10
, pp. 1299-1307
-
-
Muhlrad, D.1
Parker, R.2
-
18
-
-
0035794679
-
SC35 autoregulates its expression by promoting splicing events that destabilize its mRNAs
-
DOI 10.1093/emboj/20.7.1785
-
Sureau A, Gattoni R, Dooghe Y, Stevenin J, Soret J (2001) SC35 autoregulates its expression by promoting splicing events that destabilize its mRNAs. Embo J 20: 1785-1796. (Pubitemid 32299414)
-
(2001)
EMBO Journal
, vol.20
, Issue.7
, pp. 1785-1796
-
-
Sureau, A.1
Gattoni, R.2
Dooghe, Y.3
Stevenin, J.4
Soret, J.5
-
19
-
-
0038112131
-
Genetic background affects relative nonsense mRNA accumulation in wild-type and upf mutant yeast strains
-
Kebaara B, Nazarenus T, Taylor R, Atkin AL (2003) Genetic background affects relative nonsense mRNA accumulation in wild-type and upf mutant yeast strains. Curr Genet 43: 171-177. (Pubitemid 36798904)
-
(2003)
Current Genetics
, vol.43
, Issue.3
, pp. 171-177
-
-
Kebaara, B.1
Nazarenus, T.2
Taylor, R.3
Atkin, A.L.4
-
20
-
-
1442329652
-
Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae
-
Hurowitz EH, Brown PO (2003) Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae. Genome Biol 5: R2.
-
(2003)
Genome Biol
, vol.5
-
-
Hurowitz, E.H.1
Brown, P.O.2
-
21
-
-
0034917347
-
The budding yeast Msh4 protein functions in chromosome synapsis and the regulation of crossover distribution
-
Novak JE, Ross-Macdonald PB, Roeder GS (2001) The budding yeast Msh4 protein functions in chromosome synapsis and the regulation of crossover distribution. Genetics 158: 1013-1025. (Pubitemid 32667088)
-
(2001)
Genetics
, vol.158
, Issue.3
, pp. 1013-1025
-
-
Novak, J.E.1
Ross-Macdonald, P.B.2
Shirleen, R.G.3
-
22
-
-
39749126188
-
Crossover assurance and crossover interference are distinctly regulated by the ZMM proteins during yeast meiosis
-
DOI 10.1038/ng.83, PII NG83
-
Shinohara M, Oh SD, Hunter N, Shinohara A (2008) Crossover assurance and crossover interference are distinctly regulated by the ZMM proteins during yeast meiosis. Nat Genet 40: 299-309. (Pubitemid 351311767)
-
(2008)
Nature Genetics
, vol.40
, Issue.3
, pp. 299-309
-
-
Shinohara, M.1
Oh, S.D.2
Hunter, N.3
Shinohara, A.4
-
23
-
-
77957368734
-
Genetic analysis of baker's yeast Msh4-Msh5 reveals a threshold crossover level for meiotic viability
-
Nishant KT, Chen C, Shinohara M, Shinohara A, Alani E (2010) Genetic analysis of baker's yeast Msh4-Msh5 reveals a threshold crossover level for meiotic viability. PLoS Genet 6: e1001083.
-
(2010)
PLoS Genet
, vol.6
-
-
Nishant, K.T.1
Chen, C.2
Shinohara, M.3
Shinohara, A.4
Alani, E.5
-
24
-
-
0029758321
-
An essential component of the decapping enzyme required for normal rates of mRNA turnover
-
DOI 10.1038/382642a0
-
Beelman CA, Stevens A, Caponigro G, LaGrandeur TE, Hatfield L, et al. (1996) An essential component of the decapping enzyme required for normal rates of mRNA turnover. Nature 382: 642-646. (Pubitemid 26268959)
-
(1996)
Nature
, vol.382
, Issue.6592
, pp. 642-646
-
-
Beelman, C.A.1
Stevens, A.2
Caponigro, G.3
LaGrandeur, T.E.4
Hatfield, L.5
Fortner, D.M.6
Parker, R.7
-
25
-
-
0027932513
-
Premature translational termination triggers mRNA decapping
-
DOI 10.1038/370578a0
-
Muhlrad D, Parker R (1994) Premature translational termination triggers mRNA decapping. Nature 370: 578-581. (Pubitemid 24264927)
-
(1994)
Nature
, vol.370
, Issue.6490
, pp. 578-581
-
-
Muhlrad, D.1
Parker, R.2
-
26
-
-
0041524062
-
Interaction between Ski7p and Upf1p is required for nonsense-mediated 3′-to-5′ mRNA decay in yeast
-
DOI 10.1093/emboj/cdg374
-
Takahashi S, Araki Y, Sakuno T, Katada T (2003) Interaction between Ski7p and Upf1p is required for nonsense-mediated 3′-to-5′ mRNA decay in yeast. Embo J 22: 3951-3959. (Pubitemid 36975721)
-
(2003)
EMBO Journal
, vol.22
, Issue.15
, pp. 3951-3959
-
-
Takahashi, S.1
Araki, Y.2
Sakuno, T.3
Katada, T.4
-
27
-
-
1642447080
-
Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiae
-
DOI 10.1261/rna.5147804
-
Keeling KM, Lanier J, Du M, Salas-Marco J, Gao L, et al. (2004) Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiae. Rna 10: 691-703. (Pubitemid 38405947)
-
(2004)
RNA
, vol.10
, Issue.4
, pp. 691-703
-
-
Keeling, K.M.1
Lanier, J.2
Du, M.3
Salas-Marco, J.4
Gao, L.5
Kaenjak-Angeletti, A.6
Bedwell, D.M.7
-
28
-
-
0034544815
-
Pre-mRNA processing factors are required for nuclear export
-
DOI 10.1017/S1355838200001059
-
Brodsky AS, Silver PA (2000) Pre-mRNA processing factors are required for nuclear export. Rna 6: 1737-1749. (Pubitemid 32001945)
-
(2000)
RNA
, vol.6
, Issue.12
, pp. 1737-1749
-
-
Brodsky, A.S.1
Silver, P.A.2
-
29
-
-
0036237537
-
+] propagation
-
DOI 10.1128/MCB.22.10.3301-3315.2002
-
Cosson B, Couturier A, Chabelskaya S, Kiktev D, Inge-Vechtomov S, et al. (2002) Poly(A)-binding protein acts in translation termination via eukaryotic release factor 3 interaction and does not influence [PSI(+)] propagation. Mol Cell Biol 22: 3301-3315. (Pubitemid 34453972)
-
(2002)
Molecular and Cellular Biology
, vol.22
, Issue.10
, pp. 3301-3315
-
-
Cosson, B.1
Couturier, A.2
Chabelskaya, S.3
Kiktev, D.4
Inge-Vechtomov, S.5
Philippe, M.6
Zhouravleva, G.7
-
31
-
-
84877574893
-
Extensive transcriptional heterogeneity revealed by isoform profiling
-
Pelechano V, Wei W, Steinmetz LM (2013) Extensive transcriptional heterogeneity revealed by isoform profiling. Nature 497: 127-131.
-
(2013)
Nature
, vol.497
, pp. 127-131
-
-
Pelechano, V.1
Wei, W.2
Steinmetz, L.M.3
-
32
-
-
0025283631
-
Complementary transcripts from two genes necessary for normal meiosis in the yeast Saccharomyces cerevisiae
-
Malavasic MJ, Elder RT (1990) Complementary transcripts from two genes necessary for normal meiosis in the yeast Saccharomyces cerevisiae. Mol Cell Biol 10: 2809-2819.
-
(1990)
Mol Cell Biol
, vol.10
, pp. 2809-2819
-
-
Malavasic, M.J.1
Elder, R.T.2
-
33
-
-
84869834168
-
Alternative transcription start site selection leads to large differences in translation activity in yeast
-
Rojas-Duran MF, Gilbert WV (2012) Alternative transcription start site selection leads to large differences in translation activity in yeast. Rna 18: 2299-2305.
-
(2012)
Rna
, vol.18
, pp. 2299-2305
-
-
Rojas-Duran, M.F.1
Gilbert, W.V.2
-
34
-
-
84862302019
-
Before It Gets Started: Regulating Translation at the 5′ UTR
-
Araujo PR, Yoon K, Ko D, Smith AD, Qiao M, et al. (2012) Before It Gets Started: Regulating Translation at the 5′ UTR. Comp Funct Genomics 2012: 475731.
-
(2012)
Comp Funct Genomics
, vol.2012
, pp. 475731
-
-
Araujo, P.R.1
Yoon, K.2
Ko, D.3
Smith, A.D.4
Qiao, M.5
-
35
-
-
84876385823
-
An efficient method for genome-wide polyadenylation site mapping and RNA quantification
-
Wilkening S, Pelechano V, Jarvelin AI, Tekkedil MM, Anders S, et al. (2013) An efficient method for genome-wide polyadenylation site mapping and RNA quantification. Nucleic Acids Res 41: e65.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Wilkening, S.1
Pelechano, V.2
Jarvelin, A.I.3
Tekkedil, M.M.4
Anders, S.5
|