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Volumn 6, Issue 10, 2011, Pages

Interactions between Upf1 and the decapping factors Edc3 and pat1 in saccharomyces cerevisiae

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL RNA; MESSENGER RNA; PROTEIN EDC1; PROTEIN EDC2; PROTEIN EDC3; PROTEIN PAT1; PROTEIN UPF1; PROTEIN UPF2; PROTEINDCP2; SACCHAROMYCES CEREVISIAE PROTEIN; UNCLASSIFIED DRUG; CAPPED RNA; EDC3 PROTEIN, S CEREVISIAE; NAM7 PROTEIN, S CEREVISIAE; PAT1 PROTEIN, S CEREVISIAE; RNA BINDING PROTEIN; RNA HELICASE;

EID: 80055122225     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0026547     Document Type: Article
Times cited : (23)

References (39)
  • 2
    • 66049162655 scopus 로고    scopus 로고
    • Execution of nonsense-mediated mRNA decay: what defines a substrate?
    • Rebbapragada I, Lykke-Andersen J, (2009) Execution of nonsense-mediated mRNA decay: what defines a substrate? Curr Opin Cell Biol 21: 394-402.
    • (2009) Curr Opin Cell Biol , vol.21 , pp. 394-402
    • Rebbapragada, I.1    Lykke-Andersen, J.2
  • 3
    • 0027932513 scopus 로고
    • Premature translational termination triggers mRNA decapping
    • Muhlrad D, Parker R, (1994) Premature translational termination triggers mRNA decapping. Nature 370: 578-581.
    • (1994) Nature , vol.370 , pp. 578-581
    • Muhlrad, D.1    Parker, R.2
  • 4
    • 0038402506 scopus 로고    scopus 로고
    • Computational modeling and experimental analysis of nonsense-mediated decay in yeast
    • Cao D, Parker R, (2003) Computational modeling and experimental analysis of nonsense-mediated decay in yeast. Cell 113: 533-545.
    • (2003) Cell , vol.113 , pp. 533-545
    • Cao, D.1    Parker, R.2
  • 5
    • 0027242173 scopus 로고
    • Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1- mutant
    • He F, Peltz SW, Donahue JL, Rosbash M, Jacobson A, (1993) Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1- mutant. Proc Natl Acad Sci USA 90: 7034-7038.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 7034-7038
    • He, F.1    Peltz, S.W.2    Donahue, J.L.3    Rosbash, M.4    Jacobson, A.5
  • 6
    • 0028948708 scopus 로고
    • Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen
    • He F, Jacobson A, (1995) Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen. Genes Dev 9: 437-454.
    • (1995) Genes Dev , vol.9 , pp. 437-454
    • He, F.1    Jacobson, A.2
  • 7
    • 0742323558 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics
    • Maquat LE, (2004) Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics. Nat Rev Mol Cell Biol 5: 89-99.
    • (2004) Nat Rev Mol Cell Biol , vol.5 , pp. 89-99
    • Maquat, L.E.1
  • 8
    • 0029842901 scopus 로고    scopus 로고
    • Interaction between Nmd2p and Upf1p is required for activity but not for dominant-negative inhibition of the nonsense-mediated mRNA decay pathway in yeast
    • He F, Brown AH, Jacobson A, (1996) Interaction between Nmd2p and Upf1p is required for activity but not for dominant-negative inhibition of the nonsense-mediated mRNA decay pathway in yeast. RNA 2: 153-170.
    • (1996) RNA , vol.2 , pp. 153-170
    • He, F.1    Brown, A.H.2    Jacobson, A.3
  • 9
    • 0031025296 scopus 로고    scopus 로고
    • Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway
    • He F, Brown AH, Jacobson A, (1997) Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway. Mol Cell Biol 17: 1580-1594.
    • (1997) Mol Cell Biol , vol.17 , pp. 1580-1594
    • He, F.1    Brown, A.H.2    Jacobson, A.3
  • 10
    • 33646229126 scopus 로고    scopus 로고
    • Role for Upf2p phosphorylation in Saccharomyces cerevisiae nonsense-mediated mRNA decay
    • Wang W, Cajigas IJ, Peltz SW, Wilkinson MF, Gonzáles CI, (2006) Role for Upf2p phosphorylation in Saccharomyces cerevisiae nonsense-mediated mRNA decay. Mol Cell Biol 26: 3390-3400.
    • (2006) Mol Cell Biol , vol.26 , pp. 3390-3400
    • Wang, W.1    Cajigas, I.J.2    Peltz, S.W.3    Wilkinson, M.F.4    Gonzáles, C.I.5
  • 11
    • 33645453254 scopus 로고    scopus 로고
    • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    • Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440: 637-643.
    • (2006) Nature , vol.440 , pp. 637-643
    • Krogan, N.J.1    Cagney, G.2    Yu, H.3    Zhong, G.4    Guo, X.5
  • 12
    • 50649120174 scopus 로고    scopus 로고
    • Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast
    • Takahashi S, Araki Y, Ohya Y, Sakuno T, Hoshino S, et al. (2008) Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast. RNA 14: 1950-1958.
    • (2008) RNA , vol.14 , pp. 1950-1958
    • Takahashi, S.1    Araki, Y.2    Ohya, Y.3    Sakuno, T.4    Hoshino, S.5
  • 13
    • 68249138707 scopus 로고    scopus 로고
    • Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2
    • Clerici M, Mourão A, Gutsche I, Gehring NH, Hentze MW, et al. (2009) Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2. EMBO J 28: 2293-2306.
    • (2009) EMBO J , vol.28 , pp. 2293-2306
    • Clerici, M.1    Mourão, A.2    Gutsche, I.3    Gehring, N.H.4    Hentze, M.W.5
  • 14
    • 1842473091 scopus 로고    scopus 로고
    • The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3
    • Kadlec J, Izaurralde E, Cusack S, (2004) The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3. Nat Struct Mol Biol 11: 330-337.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 330-337
    • Kadlec, J.1    Izaurralde, E.2    Cusack, S.3
  • 15
    • 0032741067 scopus 로고    scopus 로고
    • Recognition of yeast mRNAs as "nonsense containing" leads to both inhibition of mRNA translation and mRNA degradation: implications for the control of mRNA decapping
    • Muhlrad D, Parker R, (1999) Recognition of yeast mRNAs as "nonsense containing" leads to both inhibition of mRNA translation and mRNA degradation: implications for the control of mRNA decapping. Mol Biol Cell 10: 3971-3978.
    • (1999) Mol Biol Cell , vol.10 , pp. 3971-3978
    • Muhlrad, D.1    Parker, R.2
  • 16
    • 0033214061 scopus 로고    scopus 로고
    • The Dcp2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif
    • Dunckley T, Parker R, (1999) The Dcp2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif. EMBO J 18: 5411-5422.
    • (1999) EMBO J , vol.18 , pp. 5411-5422
    • Dunckley, T.1    Parker, R.2
  • 17
    • 33744977432 scopus 로고    scopus 로고
    • Targeting of aberrant mRNAs to cytoplasmic processing bodies
    • Sheth U, Parker R, (2006) Targeting of aberrant mRNAs to cytoplasmic processing bodies. Cell 125: 1095-1109.
    • (2006) Cell , vol.125 , pp. 1095-1109
    • Sheth, U.1    Parker, R.2
  • 19
    • 0034732089 scopus 로고    scopus 로고
    • Yeast Sm-like proteins function in mRNA decapping and decay
    • Tharun S, He W, Mayes AE, Lennertz P, Beggs JD, et al. (2000) Yeast Sm-like proteins function in mRNA decapping and decay. Nature 404: 515-518.
    • (2000) Nature , vol.404 , pp. 515-518
    • Tharun, S.1    He, W.2    Mayes, A.E.3    Lennertz, P.4    Beggs, J.D.5
  • 20
    • 0035674477 scopus 로고    scopus 로고
    • The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes
    • Coller JM, Tucker M, Sheth U, Valencia-Sanchez MA, Parker R, (2001) The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes. RNA 7: 1717-1727.
    • (2001) RNA , vol.7 , pp. 1717-1727
    • Coller, J.M.1    Tucker, M.2    Sheth, U.3    Valencia-Sanchez, M.A.4    Parker, R.5
  • 21
    • 25144482816 scopus 로고    scopus 로고
    • General translational repression by activators of mRNA decapping
    • Coller J, Parker R, (2005) General translational repression by activators of mRNA decapping. Cell 122: 875-886.
    • (2005) Cell , vol.122 , pp. 875-886
    • Coller, J.1    Parker, R.2
  • 22
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin AC, Bösche M, Krause R, Grandi P, Marzioch M, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147.
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.C.1    Bösche, M.2    Krause, R.3    Grandi, P.4    Marzioch, M.5
  • 23
    • 76349083121 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae
    • Hu W, Petzold C, Coller J, Baker KE, (2010) Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae. Nat Struct Mol Biol 17: 244-247.
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 244-247
    • Hu, W.1    Petzold, C.2    Coller, J.3    Baker, K.E.4
  • 24
    • 0035148534 scopus 로고    scopus 로고
    • Two related proteins, Edc1p and Edc2p, stimulate mRNA decapping in Saccharomyces cerevisiae
    • Dunckley T, Tucker M, Parker R, (2001) Two related proteins, Edc1p and Edc2p, stimulate mRNA decapping in Saccharomyces cerevisiae. Genetics 157: 27-37.
    • (2001) Genetics , vol.157 , pp. 27-37
    • Dunckley, T.1    Tucker, M.2    Parker, R.3
  • 25
    • 0037322952 scopus 로고    scopus 로고
    • The enhancer of decapping proteins, Edc1p and Edc2p, bind RNA and stimulate activity of the decapping enzyme
    • Schwartz D, Decker CJ, Parker R, (2003) The enhancer of decapping proteins, Edc1p and Edc2p, bind RNA and stimulate activity of the decapping enzyme. RNA 9: 239-251.
    • (2003) RNA , vol.9 , pp. 239-251
    • Schwartz, D.1    Decker, C.J.2    Parker, R.3
  • 26
    • 52649118632 scopus 로고    scopus 로고
    • Crystal structure of human Edc3 and its functional implications
    • Ling SH, Decker CJ, Walsh MA, She M, Parker R, et al. (2008) Crystal structure of human Edc3 and its functional implications. Mol Cell Biol 28: 5965-5976.
    • (2008) Mol Cell Biol , vol.28 , pp. 5965-5976
    • Ling, S.H.1    Decker, C.J.2    Walsh, M.A.3    She, M.4    Parker, R.5
  • 27
    • 77956540817 scopus 로고    scopus 로고
    • Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms
    • Nissan T, Rajyaguru P, She M, Song H, Parker R, (2010) Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms. Mol Cell 39: 773-783.
    • (2010) Mol Cell , vol.39 , pp. 773-783
    • Nissan, T.1    Rajyaguru, P.2    She, M.3    Song, H.4    Parker, R.5
  • 28
    • 1642343366 scopus 로고    scopus 로고
    • Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae
    • Kshirsagar M, Parker R, (2004) Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae. Genetics 166: 729-739.
    • (2004) Genetics , vol.166 , pp. 729-739
    • Kshirsagar, M.1    Parker, R.2
  • 29
    • 77749330772 scopus 로고    scopus 로고
    • Identification and analysis of the interaction between Edc3 and Dcp2 in Saccharomyces cerevisiae
    • Harigaya Y, Jones BN, Muhlrad D, Gross JD, Parker R, (2010) Identification and analysis of the interaction between Edc3 and Dcp2 in Saccharomyces cerevisiae. Mol Cell Biol 30: 1446-1456.
    • (2010) Mol Cell Biol , vol.30 , pp. 1446-1456
    • Harigaya, Y.1    Jones, B.N.2    Muhlrad, D.3    Gross, J.D.4    Parker, R.5
  • 30
    • 33749239197 scopus 로고    scopus 로고
    • Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1
    • Kadlec J, Guilligay D, Ravelli RB, Cusack S, (2004) Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1. RNA 12: 1817-1824.
    • (2004) RNA , vol.12 , pp. 1817-1824
    • Kadlec, J.1    Guilligay, D.2    Ravelli, R.B.3    Cusack, S.4
  • 31
    • 38949156197 scopus 로고    scopus 로고
    • Structural basis of Dcp2 recognition and activation by Dcp1
    • She M, Decker CJ, Svergun DI, Round A, Chen N, et al. (2008) Structural basis of Dcp2 recognition and activation by Dcp1. Mol Cell 29: 337-349.
    • (2008) Mol Cell , vol.29 , pp. 337-349
    • She, M.1    Decker, C.J.2    Svergun, D.I.3    Round, A.4    Chen, N.5
  • 32
    • 38949151861 scopus 로고    scopus 로고
    • Pat1p contains distinct functional domains that promote P-body assembly and activation of decapping
    • Pilkington G, Parker R, (2008) Pat1p contains distinct functional domains that promote P-body assembly and activation of decapping. Mol Cell Biol 28: 1298-1312.
    • (2008) Mol Cell Biol , vol.28 , pp. 1298-1312
    • Pilkington, G.1    Parker, R.2
  • 33
    • 23644449094 scopus 로고    scopus 로고
    • Crystal structure and functional analysis of DEAD box helicase Dhh1p
    • Cheng Z, Coller J, Parker R, Song H, (2005) Crystal structure and functional analysis of DEAD box helicase Dhh1p. RNA 11: 1258-1270.
    • (2005) RNA , vol.11 , pp. 1258-1270
    • Cheng, Z.1    Coller, J.2    Parker, R.3    Song, H.4
  • 34
    • 0034599976 scopus 로고    scopus 로고
    • A Sm-like protein complex that participates in mRNA degradation
    • Bouveret E, Rigaut G, Shevchenko A, Wilm M, Séraphin B, (2000) A Sm-like protein complex that participates in mRNA degradation. EMBO J 19: 1661-1671.
    • (2000) EMBO J , vol.19 , pp. 1661-1671
    • Bouveret, E.1    Rigaut, G.2    Shevchenko, A.3    Wilm, M.4    Séraphin, B.5
  • 35
    • 35948951960 scopus 로고    scopus 로고
    • Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae
    • Decker CJ, Teixeira D, Parker R, (2007) Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae. J Cell Biol 179: 437-449.
    • (2007) J Cell Biol , vol.179 , pp. 437-449
    • Decker, C.J.1    Teixeira, D.2    Parker, R.3
  • 36
    • 70450182086 scopus 로고    scopus 로고
    • Gene expression networks: competing mRNA decay pathways in mammalian cells
    • Maquat L, Gong C, (2009) Gene expression networks: competing mRNA decay pathways in mammalian cells. Biochem Soc Trans 37: 1287-1292.
    • (2009) Biochem Soc Trans , vol.37 , pp. 1287-1292
    • Maquat, L.1    Gong, C.2
  • 37
    • 0030455820 scopus 로고    scopus 로고
    • Genomic libraries and a host strain designed for higher efficient two-hybrid selection in yeast
    • James P, Halladay J, Craig EA, (1996) Genomic libraries and a host strain designed for higher efficient two-hybrid selection in yeast. Genetics 144: 1425-1436.
    • (1996) Genetics , vol.144 , pp. 1425-1436
    • James, P.1    Halladay, J.2    Craig, E.A.3
  • 38
    • 0029791555 scopus 로고    scopus 로고
    • Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae
    • Hatfield L, Beelman CA, Stevens A, Parker R, (1996) Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae. Mol Cell Biol 16: 5830-5838.
    • (1996) Mol Cell Biol , vol.16 , pp. 5830-5838
    • Hatfield, L.1    Beelman, C.A.2    Stevens, A.3    Parker, R.4
  • 39
    • 0024669291 scopus 로고
    • A system of shuttle vectors and yeast strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
    • Sikorski RS, Hieter P, (1989) A system of shuttle vectors and yeast strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
    • (1989) Genetics , vol.122 , pp. 19-27
    • Sikorski, R.S.1    Hieter, P.2


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