메뉴 건너뛰기




Volumn 11, Issue 2, 2013, Pages 75-82

The excludon: A new concept in bacterial antisense RNA-mediated gene regulation

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY RNA; MESSENGER RNA;

EID: 84872491794     PISSN: 17401526     EISSN: 17401534     Source Type: Journal    
DOI: 10.1038/nrmicro2934     Document Type: Article
Times cited : (136)

References (51)
  • 1
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • Jacob, F. & Monod, J. Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3, 318-356 (1961).
    • (1961) J. Mol. Biol. , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 2
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters, L. S. & Storz, G. Regulatory RNAs in bacteria. Cell 136, 615-628 (2009).
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 3
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR \- A widespread system that provides acquired resistance against phages in bacteria and archaea
    • Sorek, R., Kunin, V & Hugenholtz, P. CRISPR \- a widespread system that provides acquired resistance against phages in bacteria and archaea. Nature Rev. Microbiol. 6, 181-186 (2008).
    • (2008) Nature Rev. Microbiol. , vol.6 , pp. 181-186
    • Sorek, R.1    Kunin, V.2    Hugenholtz, P.3
  • 4
    • 77955149193 scopus 로고    scopus 로고
    • The critical role of RNA processing and degradation in the control of gene expression
    • Arraiano, C M. et al. The critical role of RNA processing and degradation in the control of gene expression. FEMS Microbiol. Rev. 34, 883-923 (2010).
    • (2010) FEMS Microbiol. Rev. , vol.34 , pp. 883-923
    • Arraiano, C.M.1
  • 5
    • 80052973462 scopus 로고    scopus 로고
    • Prospects for riboswitch discovery and analysis
    • Breaker, R. R. Prospects for riboswitch discovery and analysis. Mol. Cell 43, 867-879 (2011).
    • (2011) Mol. Cell , vol.43 , pp. 867-879
    • Breaker, R.R.1
  • 6
    • 84858436083 scopus 로고    scopus 로고
    • Bacterial RNA thermometers: Molecular zippers and switches
    • Kortmann, J. & Narberhaus, F. Bacterial RNA thermometers: molecular zippers and switches. Nature Rev. Microbiol. 10, 255-265 (2012).
    • (2012) Nature Rev. Microbiol. , vol.10 , pp. 255-265
    • Kortmann, J.1    Narberhaus, F.2
  • 7
    • 80053019485 scopus 로고    scopus 로고
    • Regulation by small RNAs in bacteria: Expanding frontiers
    • Storz, G., Vogel, J. & Wassarman, K. M. Regulation by small RNAs in bacteria: expanding frontiers. Mol. Cell 43, 880-891 (2011).
    • (2011) Mol. Cell , vol.43 , pp. 880-891
    • Storz, G.1    Vogel, J.2    Wassarman, K.M.3
  • 8
    • 79958047291 scopus 로고    scopus 로고
    • R. cis-antisense RNA, another level of gene regulation in bacteria
    • Georg, J. & Hess, W. R. cis-antisense RNA, another level of gene regulation in bacteria. Microbiol. Mol. Biol. Rev. 75, 286-300 (2011).
    • (2011) Microbiol. Mol. Biol. Rev. , vol.75 , pp. 286-300
    • Georg, J.1    Hess, W.2
  • 9
    • 78149421813 scopus 로고    scopus 로고
    • Bacterial antisense RNAs: How many are there, and what are they doing?
    • Thomason, M. K. & Storz, G. Bacterial antisense RNAs: how many are there, and what are they doing? Annu. Rev. Genet. 44, 167-188 (2010).
    • (2010) Annu. Rev. Genet. , vol.44 , pp. 167-188
    • Thomason, M.K.1    Storz, G.2
  • 10
    • 67649268395 scopus 로고    scopus 로고
    • The Listeria transcriptional landscape from saprophytism to virulence
    • Toledo-Arana, A. et al. The Listeria transcriptional landscape from saprophytism to virulence. Nature 459, 950-956 (2009).
    • (2009) Nature , vol.459 , pp. 950-956
    • Toledo-Arana, A.1
  • 11
    • 84860715141 scopus 로고    scopus 로고
    • Comparative transcriptomics of pathogenic and non-pathogenic Listeria species
    • Wurtzel, O. et al. Comparative transcriptomics of pathogenic and non-pathogenic Listeria species. Mol. Syst. Biol. 8, 583 (2012).
    • (2012) Mol. Syst. Biol. , vol.8 , pp. 583
    • Wurtzel, O.1
  • 12
    • 0346070776 scopus 로고
    • RNAs involved in copy-number control and incompatibility of plasmid R1
    • Stougaard, P, Molin, S. & Nordström, K. RNAs involved in copy-number control and incompatibility of plasmid R1. Proc Natl Acad. Sci. USA 78, 6008-6012 (1981).
    • (1981) Proc Natl Acad. Sci. USA , vol.78 , pp. 6008-6012
    • Stougaard, P.1    Molin, S.2    Nordström, K.3
  • 13
    • 0019547284 scopus 로고
    • Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA
    • Tomizawa, J., Itoh, T., Selzer, G. & Som, T. Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA. Proc Natl Acad. Sci. USA 78, 1421-1425 (1981).
    • (1981) Proc Natl Acad. Sci. USA , vol.78 , pp. 1421-1425
    • Tomizawa, J.1    Itoh, T.2    Selzer, G.3    Som, T.4
  • 14
    • 0020826922 scopus 로고
    • Translational control of IS10 transposition
    • Simons, R. W. & Kleckner, N. Translational control of IS10 transposition. Cell 34, 683-691 (1983).
    • (1983) Cell , vol.34 , pp. 683-691
    • Simons, R.W.1    Kleckner, N.2
  • 15
    • 34247099372 scopus 로고    scopus 로고
    • Regulatory mechanisms employed by cis-encoded antisense RNAs
    • Brantl, S. Regulatory mechanisms employed by cis-encoded antisense RNAs. Curr. Opin. Microbiol. 10, 102-109 (2007).
    • (2007) Curr. Opin. Microbiol. , vol.10 , pp. 102-109
    • Brantl, S.1
  • 16
    • 70849119931 scopus 로고    scopus 로고
    • Transcriptome complexity in a genome-reduced bacterium
    • Guell, M. et al. Transcriptome complexity in a genome-reduced bacterium. Science 326, 1268-1271 (2009).
    • (2009) Science , vol.326 , pp. 1268-1271
    • Guell, M.1
  • 17
    • 74949137952 scopus 로고    scopus 로고
    • A single-base resolution map of an archaeal transcriptome
    • Wurtzel, O. et al. A single-base resolution map of an archaeal transcriptome. Genome Res. 20, 133-141 (2010).
    • (2010) Genome Res. , vol.20 , pp. 133-141
    • Wurtzel, O.1
  • 18
    • 77949425194 scopus 로고    scopus 로고
    • The primary transcriptome of the major human pathogen Helicobacter pylori
    • Sharma, C M. et al. The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464, 250-255 (2010).
    • (2010) Nature , vol.464 , pp. 250-255
    • Sharma, C.M.1
  • 19
    • 79952174199 scopus 로고    scopus 로고
    • An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803
    • Mitschke, J. et al. An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc Natl Acad. Sci. USA 108, 2 124-2 129 (2011).
    • (2011) Proc Natl Acad. Sci. USA , vol.108 , pp. 2124-2129
    • Mitschke, J.1
  • 20
    • 33847371621 scopus 로고    scopus 로고
    • Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
    • Mandin, P., Repoila, F., Vergassola, M., Geissmann, T & Cossart, P. Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets. Nucleic Acids Res. 35, 962-974 (2007).
    • (2007) Nucleic Acids Res. , vol.35 , pp. 962-974
    • Mandin, P.1    Repoila, F.2    Vergassola, M.3    Geissmann, T.4    Cossart, P.5
  • 21
    • 79958034240 scopus 로고    scopus 로고
    • The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages
    • Mraheil, M. A. et al. The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages. Nucleic Acids Res. 39, 4235-4248 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. 4235-4248
    • Mraheil, M.A.1
  • 22
    • 84857683425 scopus 로고    scopus 로고
    • Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis
    • Nicolas, P. et al. Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science 335, 1103-1106 (2012).
    • (2012) Science , vol.335 , pp. 1103-1106
    • Nicolas, P.1
  • 23
    • 84860742976 scopus 로고    scopus 로고
    • The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
    • Kröger, C et al. The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc. Natl Acad. Sci. USA 109, 1277-1286 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 1277-1286
    • Kröger, C.1
  • 24
    • 84855836835 scopus 로고    scopus 로고
    • Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens
    • Wilms, I., Overlöper, A., Nowrousian, M., Sharma, C. M. & Narberhaus, F. Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens. RNA Biol. 9, 446-457 (2012).
    • (2012) RNA Biol. , vol.9 , pp. 446-457
    • Wilms, I.1    Overlöper, A.2    Nowrousian, M.3    Sharma, C.M.4    Narberhaus, F.5
  • 25
    • 84866924923 scopus 로고    scopus 로고
    • The single-nucleotide resolution transcriptome of Pseudomonas aeruginosa grown in body temperature
    • Wurtzel, O. et al. The single-nucleotide resolution transcriptome of Pseudomonas aeruginosa grown in body temperature. PLoS Pathog. 8, e1002945 (2012).
    • (2012) PLoS Pathog. , vol.8
    • Wurtzel, O.1
  • 26
    • 34247489752 scopus 로고    scopus 로고
    • An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin
    • Kawano, M., Aravind, L & Storz, G. An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin. Mol. Microbiol. 64, 738-754 (2007).
    • (2007) Mol. Microbiol. , vol.64 , pp. 738-754
    • Kawano, M.1    Aravind, L.2    Storz, G.3
  • 27
    • 79955364234 scopus 로고    scopus 로고
    • Antisense RNA Protects MRNA from RNase e Degradation by RNA- RNA Duplex Formation during Phage Infection
    • Stazic, D., Lindell, D. & Steglich, C Antisense RNA protects mRNA from RNase E degradation by RNA- RNA duplex formation during phage infection. Nucleic Acids Res. 39, 4890-4899 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. 4890-4899
    • Stazic, D.1    Lindell, D.2    Steglich, C.3
  • 28
    • 28944440488 scopus 로고    scopus 로고
    • Identification of a furA cis antisense RNA in the Cyanobacterium Anabaena sp. PCC 7120
    • Hernández, J. A. et al. Identification of a furA cis antisense RNA in the Cyanobacterium Anabaena sp. PCC 7120. J. Mol. Biol. 355, 325-334 (2006).
    • (2006) J. Mol. Biol. , vol.355 , pp. 325-334
    • Hernández, J.A.1
  • 29
    • 70350159135 scopus 로고    scopus 로고
    • The transcriptionally active regions in the genome of Bacillus subtilis
    • Rasmussen, S., Nielsen, H. B. & Jarmer, H. The transcriptionally active regions in the genome of Bacillus subtilis. Mol. Microbiol. 73, 1043-1057 (2009).
    • (2009) Mol. Microbiol. , vol.73 , pp. 1043-1057
    • Rasmussen, S.1    Nielsen, H.B.2    Jarmer, H.3
  • 30
    • 84858860817 scopus 로고    scopus 로고
    • A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
    • Frohlich, K. S., Papenfort, K., Berger, A. A. & Vogel, J. A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD. Nucleic Acids Res. 40, 3623-3640 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. 3623-3640
    • Frohlich, K.S.1    Papenfort, K.2    Berger, A.A.3    Vogel, J.4
  • 31
    • 0344237410 scopus 로고    scopus 로고
    • RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
    • Vogel, J. et al. RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Res. 31, 6435-6443 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 6435-6443
    • Vogel, J.1
  • 32
    • 72849114230 scopus 로고    scopus 로고
    • Prokaryotic transcriptomics: A new view on regulation, physiology and pathogenicity
    • Sorek, R. & Cossart, P. Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity. Nature Rev. Genet. 11, 9-16 (2010).
    • (2010) Nature Rev. Genet. , vol.11 , pp. 9-16
    • Sorek, R.1    Cossart, P.2
  • 33
    • 84865728811 scopus 로고    scopus 로고
    • Antisense transcription is pervasive but rarely conserved in enteric bacteria
    • Raghavan, R., Sloan, D. B. & Ochman, H. Antisense transcription is pervasive but rarely conserved in enteric bacteria. mBio 3, e00156-12 (2012).
    • (2012) MBio , vol.3
    • Raghavan, R.1    Sloan, D.B.2    Ochman, H.3
  • 34
    • 2942574509 scopus 로고    scopus 로고
    • Transcriptional interference between convergent promoters caused by elongation over the promoter
    • Callen, B. P., Shearwin, K. E. & Egan, J. B. Transcriptional interference between convergent promoters caused by elongation over the promoter Mol. Cell 14, 647-656 (2004).
    • (2004) Mol. Cell , vol.14 , pp. 647-656
    • Callen, B.P.1    Shearwin, K.E.2    Egan, J.B.3
  • 35
    • 54549105804 scopus 로고    scopus 로고
    • S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum
    • Andre, G. et al. S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum. Nucleic Acids Res. 36, 5955-5969 (2008).
    • (2008) Nucleic Acids Res. , vol.36 , pp. 5955-5969
    • Andre, G.1
  • 36
    • 0019994521 scopus 로고
    • Promoter occlusion: Transcription through a promoter may inhibit its activity
    • Adhya, S. & Gottesman, M. Promoter occlusion: transcription through a promoter may inhibit its activity. Cell 29, 939-944 (1982).
    • (1982) Cell , vol.29 , pp. 939-944
    • Adhya, S.1    Gottesman, M.2
  • 37
    • 34247560793 scopus 로고    scopus 로고
    • Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA
    • Stork, M., Di Lorenzo, M., Welch, T. J. & Crosa, J. H. Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA. J. Bacteriol. 189, 3479-3488 (2007).
    • (2007) J. Bacteriol. , vol.189 , pp. 3479-3488
    • Stork, M.1    Di Lorenzo, M.2    Welch, T.J.3    Crosa, J.H.4
  • 38
    • 77953697277 scopus 로고    scopus 로고
    • A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri
    • Giangrossi, M. et al. A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri. Nucleic Acids Res. 38, 362-3375 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. 362-3375
    • Giangrossi, M.1
  • 39
    • 33646471951 scopus 로고    scopus 로고
    • An internal antisense RNA regulates expression of the photosynthesis gene isiA
    • Dühring, U., Axmann, I. M., Hess, W. R. & Wilde, A. An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc Natl Acad. Sci. USA 103, 7054-7058 (2006).
    • (2006) Proc Natl Acad. Sci. USA , vol.103 , pp. 7054-7058
    • Dühring, U.1    Axmann, I.M.2    Hess, W.R.3    Wilde, A.4
  • 40
    • 77952128269 scopus 로고    scopus 로고
    • An antisense RNA that governs the expression kinetics of a multifunctional virulence gene
    • Lee, E.-J. & Groisman, E. A. An antisense RNA that governs the expression kinetics of a multifunctional virulence gene. Mol. Microbiol. 76, 1020-1033 (2010).
    • (2010) Mol. Microbiol. , vol.76 , pp. 1020-1033
    • Lee, E.-J.1    Groisman, E.A.2
  • 41
    • 84055200530 scopus 로고    scopus 로고
    • Genome-wide antisense transcription drives mRNA processing in bacteria
    • Lasa, I. et al. Genome-wide antisense transcription drives mRNA processing in bacteria. Proc Natl Acad. Sci. USA 108, 20172-20177 (2011).
    • (2011) Proc Natl Acad. Sci. USA , vol.108 , pp. 20172-20177
    • Lasa, I.1
  • 42
    • 84864052473 scopus 로고    scopus 로고
    • Global regulatory functions of the Staphylococcus aureus endoribonuclease III in gene expression
    • Lioliou, E. et al. Global regulatory functions of the Staphylococcus aureus endoribonuclease III in gene expression. PLoS Genet. 8, e1002782 (2012).
    • (2012) PLoS Genet. , vol.8
    • Lioliou, E.1
  • 43
    • 79151470965 scopus 로고    scopus 로고
    • RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA
    • Opdyke, J. A., Fozo, E. M., Hemm, M. R. & Storz, G. RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA. J. Mol. Biol. 406, 29-43 (2011).
    • (2011) J. Mol. Biol. , vol.406 , pp. 29-43
    • Opdyke, J.A.1    Fozo, E.M.2    Hemm, M.R.3    Storz, G.4
  • 44
    • 4944264194 scopus 로고    scopus 로고
    • GadY, a small-RNA regulator of acid response genes in Escherichia coli
    • Opdyke, J. A., Kang, J.-G. & Storz, G. GadY, a small-RNA regulator of acid response genes in Escherichia coli. J. Mol. Biol. 186, 6698-6705 (2004).
    • (2004) J. Mol. Biol. , vol.186 , pp. 6698-6705
    • Opdyke, J.A.1    Kang, J.-G.2    Storz, G.3
  • 45
    • 54249135920 scopus 로고    scopus 로고
    • GadX/ GadW-dependent regulation of the Escherichia coli acid fitness island: Transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42bp GadX/GadW-specific binding sites
    • Tramonti, A., De Canio, M. & De Biase, D. GadX/ GadW-dependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42bp GadX/GadW-specific binding sites. Mol. Microbiol. 70, 965-982 (2008).
    • (2008) Mol. Microbiol. , vol.70 , pp. 965-982
    • Tramonti, A.1    De Canio, M.2    De Biase, D.3
  • 46
    • 84867135315 scopus 로고    scopus 로고
    • Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803
    • Sakurai, I. et al. Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803. Plant Physiol. 160, 1000-1010 (2012).
    • (2012) Plant Physiol. , vol.160 , pp. 1000-1010
    • Sakurai, I.1
  • 47
    • 84855464046 scopus 로고    scopus 로고
    • A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide
    • Sayed, N., Jousselin, A. & Felden, B. A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide. Nature Struct. Mol. Biol. 19, 105-112 (2011).
    • (2011) Nature Struct. Mol. Biol. , vol.19 , pp. 105-112
    • Sayed, N.1    Jousselin, A.2    Felden, B.3
  • 48
    • 67651225588 scopus 로고    scopus 로고
    • Identification of small RNAs in Mycobacterium tuberculosis
    • Arnvig, K. B. & Young, D. B. Identification of small RNAs in Mycobacterium tuberculosis. Mol. Microbiol. 73, 397-408 (2009).
    • (2009) Mol. Microbiol. , vol.73 , pp. 397-408
    • Arnvig, K.B.1    Young, D.B.2
  • 49
    • 77956879952 scopus 로고    scopus 로고
    • Integrating anaerobic/ aerobic sensing and the general stress response through the ArcZ small RNA
    • Mandin, P. & Gottesman, S. Integrating anaerobic/ aerobic sensing and the general stress response through the ArcZ small RNA. EMBO J. 29, 3094-3107 (2010).
    • (2010) EMBO J. , vol.29 , pp. 3094-3107
    • Mandin, P.1    Gottesman, S.2
  • 50
    • 70350176597 scopus 로고    scopus 로고
    • Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
    • Papenfort, K. et al. Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol. Microbiol. 74, 139-158 (2009).
    • (2009) Mol. Microbiol. , vol.74 , pp. 139-158
    • Papenfort, K.1
  • 51
    • 47549110972 scopus 로고    scopus 로고
    • Carbon catabolite repression in bacteria: Many ways to make the most out of nutrients
    • Görke, B. & Stülke, J. Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nature Rev. Micro. 6, 613-624 (2008).
    • (2008) Nature Rev. Micro. , vol.6 , pp. 613-624
    • Görke, B.1    Stülke, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.