Functional clustering of immunoglobulin superfamily proteins with protein-protein interaction information calibrated hidden markov model sequence profiles

Journal of Molecular Biology

Volumn 426, Issue 4, 2014, Pages 945-961

  Yap, Eng Hui ^a   Rosche, Tyler ^a   Almo, Steve ^a   Fiser, Andras ^a  

^a ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

Author keywords

functional prediction; immunoglobulin superfamily; protein protein interaction

Indexed keywords

ABATACEPT; AMINO ACID; BELATACEPT; IMMUNOGLOBULIN; IMMUNOGLOBULIN SUPERFAMILY PROTEIN; IPILIMUMAB; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR; LIGAND; PLATELET DERIVED GROWTH FACTOR RECEPTOR; PROTEIN; PROTEOME; SIALIC ACID BINDING IMMUNOGLOBULIN LIKE LECTIN; UNCLASSIFIED DRUG; B7 ANTIGEN; CD86 ANTIGEN; CYTOTOXIC T LYMPHOCYTE ANTIGEN 4;

ACCURACY; ALGORITHM; AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; CALIBRATION; CLUSTER ANALYSIS; ENDOTHELIUM CELL; HIDDEN MARKOV MODEL; HUMAN; HUMAN CELL; INNATE IMMUNITY; INTERMETHOD COMPARISON; KIDNEY GRAFT REJECTION; KIDNEY TRANSPLANTATION; LIGAND BINDING; MELANOMA; METHODOLOGY; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN PROTEIN INTERACTION; PROTEOMICS; RHEUMATOID ARTHRITIS; SEQUENCE HOMOLOGY; STATISTICAL MODEL; THYMOCYTE; XENOPUS; ADAPTIVE IMMUNITY; CELL SURFACE; COMPARATIVE STUDY; CYTOARCHITECTURE; PROTEIN INTERACTION;

FUNCTIONAL PREDICTION; GENE ONTOLOGY; GO; IGSF; IMMUNOGLOBULIN SUPERFAMILY; MSA; MULTIPLE SEQUENCE ALIGNMENT; PROTEIN-PROTEIN INTERACTION;

ALGORITHMS; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; HUMANS; IMMUNOGLOBULINS; LIGANDS; MARKOV CHAINS; PROTEIN INTERACTION DOMAINS AND MOTIFS; PROTEIN INTERACTION MAPS; XENOPUS PROTEINS;

EID: 84893690007     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2013.11.009     Document Type: Article

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