-
1
-
-
79954456859
-
Determinants of translation efficiency and accuracy
-
Gingold H, Pilpel Y. 2011. Determinants of translation efficiency and accuracy. Mol. Syst. Biol. 7:481.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 481
-
-
Gingold, H.1
Pilpel, Y.2
-
2
-
-
47549097539
-
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
-
Drummond DA, Wilke CO. 2008. Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell 134:341-352.
-
(2008)
Cell
, vol.134
, pp. 341-352
-
-
Drummond, D.A.1
Wilke, C.O.2
-
3
-
-
84862963791
-
Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection
-
Johansson M, Zhang J, Ehrenberg M. 2012. Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection. Proc. Natl. Acad. Sci. U. S. A. 109:131-136.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 131-136
-
-
Johansson, M.1
Zhang, J.2
Ehrenberg, M.3
-
5
-
-
0000238430
-
Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon
-
Yokoyama S, Watanabe T, Murao K, Ishikura H, Yamaizumi Z, Nishimura S, Miyazawa T. 1985. Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon. Proc. Natl. Acad. Sci. U. S. A. 82:4905-4909.
-
(1985)
Proc. Natl. Acad. Sci. U. S. A.
, vol.82
, pp. 4905-4909
-
-
Yokoyama, S.1
Watanabe, T.2
Murao, K.3
Ishikura, H.4
Yamaizumi, Z.5
Nishimura, S.6
Miyazawa, T.7
-
6
-
-
36749085941
-
Trm9-catalyzed tRNA modifications link translation to the DNA damage response
-
Begley U, Dyavaiah M, Patil A, Rooney JP, Direnzo D, Young CM, Conklin DS, Zitomer RS, Begley TJ. 2007. Trm9-catalyzed tRNA modifications link translation to the DNA damage response. Mol. Cell 28:860-870.
-
(2007)
Mol. Cell
, vol.28
, pp. 860-870
-
-
Begley, U.1
Dyavaiah, M.2
Patil, A.3
Rooney, J.P.4
Direnzo, D.5
Young, C.M.6
Conklin, D.S.7
Zitomer, R.S.8
Begley, T.J.9
-
7
-
-
84861671920
-
Translational control of cell division by elongator
-
Bauer F, Matsuyama A, Candiracci J, Dieu M, Scheliga J, Wolf DA, Yoshida M, Hermand D. 2012. Translational control of cell division by elongator. Cell Rep. 1:424-433.
-
(2012)
Cell Rep.
, vol.1
, pp. 424-433
-
-
Bauer, F.1
Matsuyama, A.2
Candiracci, J.3
Dieu, M.4
Scheliga, J.5
Wolf, D.A.6
Yoshida, M.7
Hermand, D.8
-
8
-
-
84880827004
-
Modification of tRNA(Lys)UUU by Elongator is essential for efficient translation of stress mRNAs
-
doi:10.1371/journal.pgen.1003647
-
Fernandez-Vasquez J, Vargas-Perez I, Sanso M, Buhne K, Carmona M, Paulo E, Hermand D, Rodriguez-Gabriel M, Ayte J, Leidel S, Hidalgo E. 2013. Modification of tRNA(Lys)UUU by Elongator is essential for efficient translation of stress mRNAs. PLoS Genet. 9:e1003647. doi:10.1371/journal.pgen.1003647.
-
(2013)
PLoS Genet.
, vol.9
-
-
Fernandez-Vasquez, J.1
Vargas-Perez, I.2
Sanso, M.3
Buhne, K.4
Carmona, M.5
Paulo, E.6
Hermand, D.7
Rodriguez-Gabriel, M.8
Ayte, J.9
Leidel, S.10
Hidalgo, E.11
-
9
-
-
84880693760
-
Lack of tRNA modification isopentenyl-A37 altersmRNAdecoding and causes metabolic deficiencies in fission yeast
-
Lamichhane TN, Blewett NH, Cherkasova VA, Crawford AK, Iben JR, Farabaugh PJ, Begley TJ, Maraia RJ. 2013. Lack of tRNA modification isopentenyl-A37 altersmRNAdecoding and causes metabolic deficiencies in fission yeast. Mol. Cell. Biol. 33:2918-2929.
-
(2013)
Mol. Cell. Biol.
, vol.33
, pp. 2918-2929
-
-
Lamichhane, T.N.1
Blewett, N.H.2
Cherkasova, V.A.3
Crawford, A.K.4
Iben, J.R.5
Farabaugh, P.J.6
Begley, T.J.7
Maraia, R.J.8
-
10
-
-
0002495140
-
Biosynthesis and function of modified nucleosides
-
Söll D, RajBhandary UL (ed), ASM Press, Washington, DC
-
Bjork GR. 1995. Biosynthesis and function of modified nucleosides, p 165-205. In Söll D, RajBhandary UL (ed), tRNA: structure, biosynthesis, and function. ASM Press, Washington, DC.
-
(1995)
tRNA: structure, biosynthesis, and function
, pp. 165-205
-
-
Bjork, G.R.1
-
11
-
-
77956276464
-
tRNA biology charges to the front
-
Phizicky EM, Hopper AK. 2010. tRNA biology charges to the front. Genes Dev. 24:1832-1860.
-
(2010)
Genes Dev.
, vol.24
, pp. 1832-1860
-
-
Phizicky, E.M.1
Hopper, A.K.2
-
12
-
-
84870152928
-
Biosynthesis and function of posttranscriptional modifications of transfer RNAs
-
El Yacoubi B, Bailly M, de Crecy-Lagard V. 2012. Biosynthesis and function of posttranscriptional modifications of transfer RNAs. Annu. Rev. Genet. 46:69-95.
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 69-95
-
-
El Yacoubi, B.1
Bailly, M.2
de Crecy-Lagard, V.3
-
13
-
-
80052375980
-
Deficit of tRNALys modification by Cdkal1 causes the development of type 2 diabetes in mice J
-
Wei F, Suzuki T, Watanabe S, Kimura S, Kaitsuka T, Fujimura A, Matsui H, Atta M, Michiue H, Fontecave M, Yamagata K, Suzuki T, Tomizawa K. 2011. Deficit of tRNALys modification by Cdkal1 causes the development of type 2 diabetes in mice J. Clin. Invest. 121:3598-3608.
-
(2011)
Clin. Invest.
, vol.121
, pp. 3598-3608
-
-
Wei, F.1
Suzuki, T.2
Watanabe, S.3
Kimura, S.4
Kaitsuka, T.5
Fujimura, A.6
Matsui, H.7
Atta, M.8
Michiue, H.9
Fontecave, M.10
Yamagata, K.11
Suzuki, T.12
Tomizawa, K.13
-
14
-
-
80055085362
-
Functional loss of Cdkal1, a novel tRNA modification enzyme, causes the development of type 2 diabetes
-
Wei FY, Tomizawa K. 2011. Functional loss of Cdkal1, a novel tRNA modification enzyme, causes the development of type 2 diabetes. Endocr. J. 58:819-825.
-
(2011)
Endocr. J.
, vol.58
, pp. 819-825
-
-
Wei, F.Y.1
Tomizawa, K.2
-
15
-
-
0002495140
-
Biosynthesis and function of modified nucleosides in tRNA
-
Söll D, RajBhandary UL (ed), ASM Press, Washington, DC
-
Bjork G. 1994. Biosynthesis and function of modified nucleosides in tRNA, p 165-206. In Söll D, RajBhandary UL (ed), tRNA: structure, biosynthesis, and function. ASM Press, Washington, DC.
-
(1994)
tRNA: structure, biosynthesis, and function
, pp. 165-206
-
-
Bjork, G.1
-
16
-
-
0028609454
-
Synthesis and function of isopentenyl adenosine derivatives in tRNA
-
Persson BC, Esberg B, Olafsson O, Bjork GR. 1994. Synthesis and function of isopentenyl adenosine derivatives in tRNA. Biochimie 76:1152-1160.
-
(1994)
Biochimie
, vol.76
, pp. 1152-1160
-
-
Persson, B.C.1
Esberg, B.2
Olafsson, O.3
Bjork, G.R.4
-
18
-
-
80053194776
-
Plasticity and diversity of tRNA anticodon determinants of substrate recognition by eukaryotic A37 isopentenyltransferases
-
Lamichhane TN, Blewett NH, Maraia RJ. 2011. Plasticity and diversity of tRNA anticodon determinants of substrate recognition by eukaryotic A37 isopentenyltransferases. RNA 17:1846-1857.
-
(2011)
RNA
, vol.17
, pp. 1846-1857
-
-
Lamichhane, T.N.1
Blewett, N.H.2
Maraia, R.J.3
-
19
-
-
55849083574
-
Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: insight into tRNA recognition and reaction mechanism
-
Zhou C, Huang RH. 2008. Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: insight into tRNA recognition and reaction mechanism. Proc. Natl. Acad. Sci. U. S. A. 105:16142-16147.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 16142-16147
-
-
Zhou, C.1
Huang, R.H.2
-
20
-
-
24644439576
-
Identification and functional characterization of the candidate tumor suppressor gene TRIT1 in human lung cancer
-
Spinola M, Galvan A, Pignatiello C, Conti B, Pastorino U, Nicander B, Paroni R, Dragani TA. 2005. Identification and functional characterization of the candidate tumor suppressor gene TRIT1 in human lung cancer. Oncogene 24:5502-5509.
-
(2005)
Oncogene
, vol.24
, pp. 5502-5509
-
-
Spinola, M.1
Galvan, A.2
Pignatiello, C.3
Conti, B.4
Pastorino, U.5
Nicander, B.6
Paroni, R.7
Dragani, T.A.8
-
21
-
-
33847262125
-
Ethnic differences in frequencies of gene polymorphisms in the MYCL1 region and modulation of lung cancer patients' survival
-
Spinola M, Falvella FS, Galvan A, Pignatiello C, Leoni VP, Pastorino U, Paroni R, Chen S, Skaug V, Haugen A, Dragani TA. 2007. Ethnic differences in frequencies of gene polymorphisms in the MYCL1 region and modulation of lung cancer patients' survival. Lung Cancer 55:271-277.
-
(2007)
Lung Cancer
, vol.55
, pp. 271-277
-
-
Spinola, M.1
Falvella, F.S.2
Galvan, A.3
Pignatiello, C.4
Leoni, V.P.5
Pastorino, U.6
Paroni, R.7
Chen, S.8
Skaug, V.9
Haugen, A.10
Dragani, T.A.11
-
22
-
-
84874085407
-
Mammalian Trit1 is a tRNA([Ser]Sec)-isopentenyl transferase required for full selenoprotein expression
-
Fradejas N, Carlson BA, Rijntjes E, Becker NP, Tobe R, Schweizer U. 2013. Mammalian Trit1 is a tRNA([Ser]Sec)-isopentenyl transferase required for full selenoprotein expression. Biochem. J. 450:427-432.
-
(2013)
Biochem. J.
, vol.450
, pp. 427-432
-
-
Fradejas, N.1
Carlson, B.A.2
Rijntjes, E.3
Becker, N.P.4
Tobe, R.5
Schweizer, U.6
-
23
-
-
0034623066
-
Inhibition of selenoprotein synthesis by selenocysteine tRNA[Ser]Sec lacking isopentenyladenosine
-
Warner GJ, Berry MJ, Moustafa ME, Carlson BA, Hatfield DL, Faust JR. 2000. Inhibition of selenoprotein synthesis by selenocysteine tRNA[Ser]Sec lacking isopentenyladenosine. J. Biol. Chem. 275:28110 -28119.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 28110-28119
-
-
Warner, G.J.1
Berry, M.J.2
Moustafa, M.E.3
Carlson, B.A.4
Hatfield, D.L.5
Faust, J.R.6
-
24
-
-
0004135663
-
Basic methods in molecular biology
-
Elsevier, New York, NY
-
Davis LG, Dibner MD, Battey JF. 1986. Basic methods in molecular biology. Elsevier, New York, NY.
-
(1986)
-
-
Davis, L.G.1
Dibner, M.D.2
Battey, J.F.3
-
25
-
-
84862529706
-
Yeast tRNAomics: tRNA gene copy number variation and codon use provide bioinformatics evidence of a new wobble pair in a eukaryote
-
Iben JR, Maraia RJ. 2012. Yeast tRNAomics: tRNA gene copy number variation and codon use provide bioinformatics evidence of a new wobble pair in a eukaryote. RNA 18:1358-1372.
-
(2012)
RNA
, vol.18
, pp. 1358-1372
-
-
Iben, J.R.1
Maraia, R.J.2
-
26
-
-
58149189877
-
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
-
Chan PP, Lowe TM. 2009. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res. 37:D93-D97.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Chan, P.P.1
Lowe, T.M.2
-
27
-
-
84860217011
-
A genomic tRNA database
-
University of California at Santa Cruz, Santa Cruz, CA
-
Lowe TM. 2013. A genomic tRNA database. University of California at Santa Cruz, Santa Cruz, CA. http://gtrnadb.ucsc.edu/.
-
(2013)
-
-
Lowe, T.M.1
-
28
-
-
0034619490
-
Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species
-
Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF. 2000. Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species. Biochemistry 39:13390-13395.
-
(2000)
Biochemistry
, vol.39
, pp. 13390-13395
-
-
Yarian, C.1
Marszalek, M.2
Sochacka, E.3
Malkiewicz, A.4
Guenther, R.5
Miskiewicz, A.6
Agris, P.F.7
-
29
-
-
0030750024
-
Transfer RNA recognition by the Escherichia coli delta2-isopentenyl-pyrophosphate:tRNA delta2-isopentenyl transferase: dependence on the anticodon arm structure
-
Motorin Y, Bec G, Tewari R, Grosjean H. 1997. Transfer RNA recognition by the Escherichia coli delta2-isopentenyl-pyrophosphate:tRNA delta2-isopentenyl transferase: dependence on the anticodon arm structure. RNA 3:721-733.
-
(1997)
RNA
, vol.3
, pp. 721-733
-
-
Motorin, Y.1
Bec, G.2
Tewari, R.3
Grosjean, H.4
-
30
-
-
0034732888
-
Escherichia coli dimethylallyl diphosphate: tRNA dimethylallyltransferase: essential elements for recognition of tRNA substrates within the anticodon stem-loop
-
Soderberg T, Poulter CD. 2000. Escherichia coli dimethylallyl diphosphate: tRNA dimethylallyltransferase: essential elements for recognition of tRNA substrates within the anticodon stem-loop. Biochemistry 39:6546-6553.
-
(2000)
Biochemistry
, vol.39
, pp. 6546-6553
-
-
Soderberg, T.1
Poulter, C.D.2
-
31
-
-
0035852848
-
Escherichia coli dimethylallyl diphosphate: tRNA dimethylallyltransferase: site-directed mutagenesis of highly conserved residues
-
Soderberg T, Poulter CD. 2001. Escherichia coli dimethylallyl diphosphate: tRNA dimethylallyltransferase: site-directed mutagenesis of highly conserved residues. Biochemistry 40:1734-1740.
-
(2001)
Biochemistry
, vol.40
, pp. 1734-1740
-
-
Soderberg, T.1
Poulter, C.D.2
-
32
-
-
84864311568
-
Understanding selenoprotein function and regulation through the use of rodent models
-
Kasaikina MV, Hatfield DL, Gladyshev VN. 2012. Understanding selenoprotein function and regulation through the use of rodent models. Biochim. Biophys. Acta 1823:1633-1642.
-
(2012)
Biochim. Biophys. Acta
, vol.1823
, pp. 1633-1642
-
-
Kasaikina, M.V.1
Hatfield, D.L.2
Gladyshev, V.N.3
-
33
-
-
0027295078
-
Dietary selenium affects methylation of the wobble nucleoside in the anticodon of selenocysteine tRNA([Ser]Sec)
-
Diamond AM, Choi IS, Crain PF, Hashizume T, Pomerantz SC, Cruz R, Steer CJ, Hill KE, Burk RF, McCloskey JA, Hatfield DL. 1993. Dietary selenium affects methylation of the wobble nucleoside in the anticodon of selenocysteine tRNA([Ser]Sec). J. Biol. Chem. 268:14215-14223.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 14215-14223
-
-
Diamond, A.M.1
Choi, I.S.2
Crain, P.F.3
Hashizume, T.4
Pomerantz, S.C.5
Cruz, R.6
Steer, C.J.7
Hill, K.E.8
Burk, R.F.9
McCloskey, J.A.10
Hatfield, D.L.11
-
34
-
-
0026087473
-
Selenium induces changes in the selenocysteine tRNA[Ser]Sec population in mammalian cells
-
Hatfield D, Lee BJ, Hampton L, Diamond AM. 1991. Selenium induces changes in the selenocysteine tRNA[Ser]Sec population in mammalian cells. Nucleic Acids Res. 19:939-943.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 939-943
-
-
Hatfield, D.1
Lee, B.J.2
Hampton, L.3
Diamond, A.M.4
-
35
-
-
0023084849
-
Isolation and characterization of MOD5, a gene required for isopentenylation of cytoplasmic and mitochondrial tRNAs of Saccharomyces cerevisiae
-
Dihanich ME, Najarian D, Clark R, Gillman EC, Martin NC, Hopper AK. 1987. Isolation and characterization of MOD5, a gene required for isopentenylation of cytoplasmic and mitochondrial tRNAs of Saccharomyces cerevisiae. Mol. Cell. Biol. 7:177-184.
-
(1987)
Mol. Cell. Biol.
, vol.7
, pp. 177-184
-
-
Dihanich, M.E.1
Najarian, D.2
Clark, R.3
Gillman, E.C.4
Martin, N.C.5
Hopper, A.K.6
-
36
-
-
46349103594
-
A mitochondrial protein compendium elucidates complex I disease biology
-
Pagliarini DJ, Calvo SE, Chang B, Sheth SA, Vafai SB, Ong SE, Walford GA, Sugiana C, Boneh A, Chen WK, Hill DE, Vidal M, Evans JG, Thorburn DR, Carr SA, Mootha VK. 2008. A mitochondrial protein compendium elucidates complex I disease biology. Cell 134:112-123.
-
(2008)
Cell
, vol.134
, pp. 112-123
-
-
Pagliarini, D.J.1
Calvo, S.E.2
Chang, B.3
Sheth, S.A.4
Vafai, S.B.5
Ong, S.E.6
Walford, G.A.7
Sugiana, C.8
Boneh, A.9
Chen, W.K.10
Hill, D.E.11
Vidal, M.12
Evans, J.G.13
Thorburn, D.R.14
Carr, S.A.15
Mootha, V.K.16
-
37
-
-
78650683942
-
A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress
-
doi:10.1371/journal.pgen.1001247
-
Chan CT, Dyavaiah M, DeMott MS, Taghizadeh K, Dedon PC, Begley TJ. 2010. A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress. PLoS Genet. 6:e1001247. doi:10.1371/journal.pgen.1001247.
-
(2010)
PLoS Genet.
, vol.6
-
-
Chan, C.T.1
Dyavaiah, M.2
DeMott, M.S.3
Taghizadeh, K.4
Dedon, P.C.5
Begley, T.J.6
-
38
-
-
0033835306
-
Methylation of the ribosyl moiety at position 34 of selenocysteine tRNA[Ser]Sec is governed by both primary and tertiary structure
-
Kim LK, Matsufuji T, Matsufuji S, Carlson BA, Kim SS, Hatfield DL, Lee BJ. 2000. Methylation of the ribosyl moiety at position 34 of selenocysteine tRNA[Ser]Sec is governed by both primary and tertiary structure. RNA 6:1306-1315.
-
(2000)
RNA
, vol.6
, pp. 1306-1315
-
-
Kim, L.K.1
Matsufuji, T.2
Matsufuji, S.3
Carlson, B.A.4
Kim, S.S.5
Hatfield, D.L.6
Lee, B.J.7
-
39
-
-
79959232097
-
Inhibition of selenocysteine tRNA[Ser]Sec aminoacylation provides evidence that aminoacylation is required for regulatory methylation of this tRNA
-
Kim JY, Carlson BA, Xu XM, Zeng Y, Chen S, Gladyshev VN, Lee BJ, Hatfield DL. 2011. Inhibition of selenocysteine tRNA[Ser]Sec aminoacylation provides evidence that aminoacylation is required for regulatory methylation of this tRNA. Biochem. Biophys. Res. Commun. 409:814-819.
-
(2011)
Biochem. Biophys. Res. Commun.
, vol.409
, pp. 814-819
-
-
Kim, J.Y.1
Carlson, B.A.2
Xu, X.M.3
Zeng, Y.4
Chen, S.5
Gladyshev, V.N.6
Lee, B.J.7
Hatfield, D.L.8
-
40
-
-
70349559748
-
Mouse models targeting selenocysteine tRNA expression for elucidating the role of selenoproteins in health and development
-
Carlson BA, Yoo MH, Tsuji PA, Gladyshev VN, Hatfield DL. 2009. Mouse models targeting selenocysteine tRNA expression for elucidating the role of selenoproteins in health and development. Molecules 14:3509-3527.
-
(2009)
Molecules
, vol.14
, pp. 3509-3527
-
-
Carlson, B.A.1
Yoo, M.H.2
Tsuji, P.A.3
Gladyshev, V.N.4
Hatfield, D.L.5
-
41
-
-
0028014607
-
Reconstitution of the biosynthetic pathway of selenocysteine tRNAs in Xenopus oocytes
-
Choi IS, Diamond AM, Crain PF, Kolker JD, McCloskey JA, Hatfield DL. 1994. Reconstitution of the biosynthetic pathway of selenocysteine tRNAs in Xenopus oocytes. Biochemistry 33:601-605.
-
(1994)
Biochemistry
, vol.33
, pp. 601-605
-
-
Choi, I.S.1
Diamond, A.M.2
Crain, P.F.3
Kolker, J.D.4
McCloskey, J.A.5
Hatfield, D.L.6
|