A genome-wide metabolomic resource for tomato fruit from Solanum pennellii

Scientific Reports

Volumn 4, Issue , 2014, Pages

  Perez Fons, Laura ^a   Wells, Tom ^a   Corol, Delia I ^b   Ward, Jane L ^b   Gerrish, Christopher ^a   Beale, Michael H ^b   Seymour, Graham B ^c   Bramley, Peter M ^a   Fraser, Paul D ^a  

^a UNIVERSITY OF LONDON   (United Kingdom)

^b ROTHAMSTED RESEARCH   (United Kingdom)

^c UNIVERSITY OF NOTTINGHAM   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CAROTENOID; TERPENE; TOCOPHEROL;

ARTICLE; BIOTECHNOLOGY; BREEDING; FRUIT; GENETICS; METABOLOME; METABOLOMICS; QUANTITATIVE TRAIT LOCUS; SOLANUM; TOMATO;

BIOTECHNOLOGY; BREEDING; CAROTENOIDS; FRUIT; LYCOPERSICON ESCULENTUM; METABOLOME; METABOLOMICS; QUANTITATIVE TRAIT LOCI; SOLANUM; TERPENES; TOCOPHEROLS;

EID: 84893063914     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep03859     Document Type: Article

References (46)

1. Food and Agriculture Organization of the United Nations. Tomato production. http://faostat.fao.org/ (2013) Date of access 15/10/13.
2. Spencer, J. P. E. et al. The genomic variation of the antioxidant potential of different toamot varieties. Free Radic. Res. 39, 1005-1016 (2005)
3. Giovannoni, J. Molecular biology of fruit maturation and ripening. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52, 725-749 (2001)
4. Zamir, D. Improving plant breeding with exotic genetic libraries. Nat. Rev. Genet. 2, 983-989 (2001)
5. Lippman, Z. B., Semel, Y. & Zamir, D. An integrated view of quantitative trait variation using tomato interspecific introgression lines. Curr. Opin. Genet. Dev. 17, 545-552 (2007)
6. Eshed, Y. & Zamir, D. Introgressions from Lycopersicon pennellii can improve the soluble solids yield of tomato hybrids. Theoret. Appl. Genet. 88, 891-897 (1994)
7. Liu, Y. S. et al. There is more to tomato fruit colour than candidate carotenoid genes. Plant Biotech. J. 1, 195-207 (2003)
8. Minoia, S. et al. A newmutant genetic resource for tomato crop improvements by TILLING technology. BMC Res. Notes 3, 69 (2010)
9. Faurobert, M. et al. Major proteome variations associated with cherry tomato pericarp development and ripening. Plant Physiol. 143, 1327-1346 (2007)
10. Steinhauser, M. C. et al. Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii. Plant Physiol. 153, 80-98 (2010)
11. Schauer, N. et al. Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat. Biotechnol. 24, 447-454 (2006)
12. The Tomato Genome Consortium. The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485, 635-641 (2012)
13. Fernie, A. R., Tadmor, Y. & Zamir, D. Natural genetic variation for improving crop quality. Curr. Opin. Pant Biol. 9, 196-202 (2006)
14. Fernie, A. R. & Schauer, N. Metabolomics-assisted breeding: a viable option for crop improvement? Trends Genet. 25, 39-48 (2009)
15. Bai, Y. & Lindhout, P. Domestication and breeding of tomatoes: what have we gained and what can we gain in the future? Ann. Bot. 100, 1085-1094 (2007)
16. Miller, J. C. & Tanksley, S. D. RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon. Theor. Appl. Genet. 80, 437-448 (1990)
17. Frary, A. & Doganlar, S. Comparative genetics of crop plant domestication and evolution. Turk. J. Agric. For. 27, 56-69 (2003)
18. Tieman, D. et al. Tomato aromatic amino acids decarboxylases participate in synthesis of the flavour volatiles 2-phenylethanol and 2-phenylacetaldehyde. Proc. Natl. Acad. Sci. USA 103, 8287-8292 (2006)
19. Fridmann, E., Carrari, F., Lin, Y. S., Fernie, A. R. & Zamir, D. Zooming in on a quantitative trait for tomato yield using interspecific introgressions. Science 305, 1786-1789 (2004)
20. Schauer, N. et al.Mode of inheritance of primary metabolic traits in tomato. Plant Cell 20, 509-523 (2008)
21. Fraser, P. D. et al. Manipulation of phytoene levels in tomato fruit: effects on isoprenoids, plastids and intermediary metabolism. The Plant Cell 19, 3194-3211 (2007)
22. Lee, J. M. et al. Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation. The Plant Journal 70, 191-204 (2012)
23. Cannes do Nascimento, N. & Fett-Neto, A. G. Plant secondary metabolism and challenges in modifying its operation: an overview. Methods in Mol. Biol. 643, 1-13 (2010)
24. Fernie, A. R., Tadmor, Y. & Zamir, D. Natural genetic variation for improving crop quality. Curr. Opin. Plant Biol. 9, 196-202 (2006)
25. Fernie, A. R. & Schauer, N. Metabolomics-assisted breeding: a viable option for crop improvement? Trends Genet. 25, 39-48 (2009)
26. Almeida, J. et al. Genetic dissection of vitamin E biosynthesis in tomato. J. Exp. Bot. 62, 3781-3798 (2011)
27. Chibon, P.-Y., Schoof, H., Visser, R. G. F. & Finkers, R. Marker2sequence, mine your QTL regions for candidate genes. Bioinformatics 28, 1921-1922 (2012)
28. Enfissi, E. M. A. et al. Metabolic engineering of the mevalonate and nonmevalonate isopentenyl diphosphate-forming pathways for the production of health-promoting isoprenoids in tomato. Plant Biotechnol. J. 3, 17-27 (2005)
29. Sweetlove, L. J. & Fernie, A. R. The spatial organization of metabolism within the plant cell. Annu. Rev. Plant Biol. 64, 723-746.
30. Ruther, A., Misawa, N., Böger, P. & Sandmann, G. Production of zeaxanthin in Escherichia coli transformed with different carotenogenic plasmids. Appl. Microbiol. Biotechnol. 48, 162-167 (1997)
31. Kajiwara, S., Fraser, P. D., Kondo, K. & Misawa, N. Expression of an exogenous isopentenyl diphosphate isomerase gene enhances isoprenoid biosynthesis in Escherichia coli. Biochem. J. 324, 421-426 (1997)
32. Nakamura, A., Shimada, H., Masuda, T., Ohta, H. & Takamiya, K. Two distinct isopentenyl diphosphate isomerases in cytosol and plastid are differentially induced by environmental stresses in tobacco. FEBS Lett. 506, 61-64 (2001)
33. Fraser, P. D. et al. Evaluation of transgenic tomato plants expressing an additional phytoene synthase in a fruit specific manner. Proc. Natl. Acad. Sci. USA 99, 1092-1097 (2002)
34. Fujisawa, M. et al. Pathway engineering of Brassica napus seeds using multiple key-enzyme genes involved in ketocarotenoid formation. J. Exp. Bot. 60, 1319-1332 (2009)
35. Shintani, D. & DellaPenna, D. Elevating the vitamin E content of plants through metabolic engineering. Science 282, 2098-2100 (1998)
36. Bouvier, F., Rahier, A.&Camara, B. Biogenesis, molecular regulation and function of plant isoprenoids. Prog. Lipid Res. 44, 357-429 (2005)
37. Fraser, P. D. & Bramley, P. M. The biosynthesis and nutritional uses of carotenoids. Prog. Lipid Res. 43, 228-265 (2004)
38. Buker, M., Schunemann, D. & Borchert, S. Enzymic properties and capacities of developing tomato (Lycopersicon esculentum L.) fruit plastids. J. Exp. Bot. 49, 681-691 (1998)
39. Lytovchenko, A. et al. Tomato fruit photosynthesis is seemingly unimportant in primary metabolism and ripening but plays a considerable role in seed development. Plant Physiol. 157, 1650-1663 (2011)
40. Enfissi, E. M. A. et al. Integrative transcript and metabolite analysis of nutritionally enhanced DE-ETIOLATED1 downregulated tomato fruit. The Plant Cell 22, 1190-1215 (2010)
41. Ward, J. L., Baker, J. M., Llewellyn, A. M., Hawkins, N. D. & Beale, M. H. Metabolomic analysis of Arabidopsis reveals hemiterpenoid glycosides as products of a nitrate ion-regulated, carbon overflow. Proc. Natl. Acad. Sci. USA 108, 10762-10767 (2011)
42. Laule, O. et al. Crosstalk between cytosolic and plastidial pathways of isoprenoid biosynthesis in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 100, 6866-6871 (2003)
43. Shahbazi, M., Gilbert, M., Laboure, A.-M. & Kuntz, M. Dual role of the plastid terminal oxidase in tomato. Plant Physiol. 145, 691-702 (2007)
44. Vranova, E., Conran, D. & Gruissem, W. Structure and dynamics of the isoprenoid pathway network. Mol. Plant 5, 318-333 (2012)
45. Ward, J. L., Baker, J. M. & Beale, M. H. Recent applications of NMR spectroscopy in plant metabolomics. FEBS J. 274, 1126-1131 (2007)
46. Storey, J. D.&Tibshirani, R. Statistical significance for genome-wide experiments. Proc. Natl. Acad. Sci. 100, 9440-9445 (2003)