메뉴 건너뛰기




Volumn 20, Issue 7, 2004, Pages 1151-1156

Predicting subcellular localization of proteins in a hybridization space

Author keywords

[No Author keywords available]

Indexed keywords

VEGETABLE PROTEIN;

EID: 2442671554     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth054     Document Type: Article
Times cited : (84)

References (37)
  • 3
    • 0017226517 scopus 로고
    • Extraction from free ribosomes of a factor mediating ribosome detachment from rough microsomes
    • Blobel,G. (1976) Extraction from free ribosomes of a factor mediating ribosome detachment from rough microsomes. Biochem. Biophys. Res. Commun., 68, 1-7.
    • (1976) Biochem. Biophys. Res. Commun. , vol.68 , pp. 1-7
    • Blobel, G.1
  • 4
    • 0034452415 scopus 로고    scopus 로고
    • Using neural networks for prediction of subcellular location of prokaryotic and eukaryotic proteins
    • Cai,Y.D. and Chou,K.C. (2000) Using neural networks for prediction of subcellular location of prokaryotic and eukaryotic proteins. Mol. Cell Biol. Res. Commun., 4, 172-173.
    • (2000) Mol. Cell Biol. Res. Commun. , vol.4 , pp. 172-173
    • Cai, Y.D.1    Chou, K.C.2
  • 5
    • 0035672036 scopus 로고    scopus 로고
    • Support vector machines for prediction of protein subcellular location by incorporating quasi-sequence-order effect
    • Cai,Y.D., Liu,X.J., Xu,X.B. and Chou,K.C. (2002) Support vector machines for prediction of protein subcellular location by incorporating quasi-sequence-order effect. J. Cell. Biochem., 84, 343-348.
    • (2002) J. Cell. Biochem. , vol.84 , pp. 343-348
    • Cai, Y.D.1    Liu, X.J.2    Xu, X.B.3    Chou, K.C.4
  • 6
    • 0031588694 scopus 로고    scopus 로고
    • Relation between amino acid composition and cellular location of proteins
    • Cedano,J., Aloy,P., P'erez-Pons,J.A. and Querol,E. (1997) Relation between amino acid composition and cellular location of proteins. J. Mol. Biol., 266, 594-600.
    • (1997) J. Mol. Biol. , vol.266 , pp. 594-600
    • Cedano, J.1    Aloy, P.2    P'erez-Pons, J.A.3    Querol, E.4
  • 7
    • 0033525591 scopus 로고    scopus 로고
    • Solution structure of BID, an intracellular amplifier of apoptotic signalling
    • Chou,J.J., Li,H., Salvessen,G.S., Yuan,J. and Wagner,G. (1999) Solution structure of BID, an intracellular amplifier of apoptotic signalling. Cell, 96, 615-624.
    • (1999) Cell , vol.96 , pp. 615-624
    • Chou, J.J.1    Li, H.2    Salvessen, G.S.3    Yuan, J.4    Wagner, G.5
  • 8
    • 0032563323 scopus 로고    scopus 로고
    • Solution structure of the RAIDD CARD and model for CARD/CARD interaction in caspase-2 and caspase-9 recruitment
    • Chou,J.J., Matsuo,H., Duan,H. and Wagner,G. (1998) Solution structure of the RAIDD CARD and model for CARD/CARD interaction in caspase-2 and caspase-9 recruitment. Cell, 94, 171-180.
    • (1998) Cell , vol.94 , pp. 171-180
    • Chou, J.J.1    Matsuo, H.2    Duan, H.3    Wagner, G.4
  • 9
    • 0029051959 scopus 로고
    • A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space
    • Chou,K.C. (1995) A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space. Prot. Struct. Funct. Genet., 21, 319-344.
    • (1995) Prot. Struct. Funct. Genet. , vol.21 , pp. 319-344
    • Chou, K.C.1
  • 10
    • 0034687538 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations by incorporating quasi-sequence-order effect
    • Chou,K.C. (2000) Prediction of protein subcellular locations by incorporating quasi-sequence-order effect. Biochem. Biophys. Res. Commun., 278, 477-483.
    • (2000) Biochem. Biophys. Res. Commun. , vol.278 , pp. 477-483
    • Chou, K.C.1
  • 11
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo-amino-acid-composition
    • [Erratum (2001) Prot. Struct. Funct. Genet., 44, 60.]
    • Chou,K.C. (2001) Prediction of protein cellular attributes using pseudo-amino-acid-composition. Prot. Struct. Func. Genet., 43, 246-255. [Erratum (2001) Prot. Struct. Funct. Genet., 44, 60.]
    • (2001) Prot. Struct. Func. Genet. , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 12
    • 0038002153 scopus 로고    scopus 로고
    • A new branch of proteomics: Prediction of protein cellular attributes
    • Weinrer,P.W. and Lu,Q. (eds.), Chapter 4. Eaton Publishing, Westborough, MA
    • Chou,K.C. (2002) A new branch of proteomics: prediction of protein cellular attributes. In Weinrer,P.W. and Lu,Q. (eds.), Gene Cloning and Expression Technologies, Chapter 4. Eaton Publishing, Westborough, MA, pp. 57-70.
    • (2002) Gene Cloning and Expression Technologies , pp. 57-70
    • Chou, K.C.1
  • 13
    • 0037195776 scopus 로고    scopus 로고
    • Using functional domain composition and support vector machines for prediction of protein subcellular location
    • Chou,K.C. and Cai,Y.D. (2002) Using functional domain composition and support vector machines for prediction of protein subcellular location. J. Biol. Chem., 277, 45765-45769.
    • (2002) J. Biol. Chem. , vol.277 , pp. 45765-45769
    • Chou, K.C.1    Cai, Y.D.2
  • 14
    • 0141815538 scopus 로고    scopus 로고
    • Predicting protein quaternary structure by pseudo amino acid composition
    • Chou,K.C. and Cai,Y.D. (2003) Predicting protein quaternary structure by pseudo amino acid composition. Prot. Struct. Funct. Genet., 53, 282-289.
    • (2003) Prot. Struct. Funct. Genet. , vol.53 , pp. 282-289
    • Chou, K.C.1    Cai, Y.D.2
  • 15
    • 0032940342 scopus 로고    scopus 로고
    • Protein subcellular location prediction
    • Chou,K.C. and Elrod,D.W. (1999) Protein subcellular location prediction. Protein Eng., 12, 107-118.
    • (1999) Protein Eng. , vol.12 , pp. 107-118
    • Chou, K.C.1    Elrod, D.W.2
  • 16
    • 0037783143 scopus 로고    scopus 로고
    • Prediction of enzyme family classes
    • Chou,K.C. and Elrod,D.W. (2003) Prediction of enzyme family classes. J. Proteome Res., 2, 183-190.
    • (2003) J. Proteome Res. , vol.2 , pp. 183-190
    • Chou, K.C.1    Elrod, D.W.2
  • 17
    • 0029157083 scopus 로고
    • Review: Prediction of protein structural classes
    • Chou,K.C. and Zhang,C.T. (1995) Review: prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol., 30, 275-349.
    • (1995) Crit. Rev. Biochem. Mol. Biol. , vol.30 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 19
    • 84926662675 scopus 로고
    • Nearest neighbour pattern classification
    • IT-13
    • Cover,T.M. and Hart,P.E. (1967) Nearest neighbour pattern classification. IEEE Trans. Inform. Theory, IT-13, 21-27.
    • (1967) IEEE Trans. Inform. Theory , pp. 21-27
    • Cover, T.M.1    Hart, P.E.2
  • 20
    • 0034697980 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
    • Emanuelsson,O., Nielsen,H., Brunak,S. and von Heijne,G. (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J. Mol. Biol., 300, 1005-1016.
    • (2000) J. Mol. Biol. , vol.300 , pp. 1005-1016
    • Emanuelsson, O.1    Nielsen, H.2    Brunak, S.3    von Heijne, G.4
  • 21
    • 0035053818 scopus 로고    scopus 로고
    • Prediction of the subcellular location of prokaryotic proteins based on a new representation of the amino acid composition
    • Feng,Z.P. (2001) Prediction of the subcellular location of prokaryotic proteins based on a new representation of the amino acid composition. Biopolymers, 58, 491-499.
    • (2001) Biopolymers , vol.58 , pp. 491-499
    • Feng, Z.P.1
  • 22
    • 0035852969 scopus 로고    scopus 로고
    • Prediction of the subcellular location of prokaryotic proteins based on the hydrophobicity index of amino acids
    • Feng,Z.P. and Zhang,C.T. (2001) Prediction of the subcellular location of prokaryotic proteins based on the hydrophobicity index of amino acids. Int. J. Biol. Macromol., 28, 255-261.
    • (2001) Int. J. Biol. Macromol. , vol.28 , pp. 255-261
    • Feng, Z.P.1    Zhang, C.T.2
  • 24
    • 0034843744 scopus 로고    scopus 로고
    • Support vector machine approach for protein subcellular localization prediction
    • Hua,S. and Sun,Z. (2001) Support vector machine approach for protein subcellular localization prediction. Bioinformatics, 17, 721-728.
    • (2001) Bioinformatics , vol.17 , pp. 721-728
    • Hua, S.1    Sun, Z.2
  • 28
    • 0032972509 scopus 로고    scopus 로고
    • PSORT: A program for detecting sorting signals in proteins and predicting their subcellular localization
    • Nakai,K. and Horton,P. (1999) PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci., 24, 34-36.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 34-36
    • Nakai, K.1    Horton, P.2
  • 29
    • 0027105007 scopus 로고
    • A knowledge base for predicting protein localization sites in eukaryotic cells
    • Nakai,K. and Kanehisa,M. (1992) A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics, 14, 897-911.
    • (1992) Genomics , vol.14 , pp. 897-911
    • Nakai, K.1    Kanehisa, M.2
  • 30
    • 0028239038 scopus 로고
    • Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies
    • Nakashima,H. and Nishikawa,K. (1994) Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies. J. Mol. Biol., 238, 54-61.
    • (1994) J. Mol. Biol. , vol.238 , pp. 54-61
    • Nakashima, H.1    Nishikawa, K.2
  • 31
    • 0042885957 scopus 로고    scopus 로고
    • Application of pseudo amino acid composition for predicting protein subcellular location: Stochastic signal processing approach
    • Pan,Y.X., Zhang,Z.Z., Guo,Z.M., Feng,G.Y., Huang,Z.D. and He,L. (2003) Application of pseudo amino acid composition for predicting protein subcellular location: stochastic signal processing approach. J. Prot. Chem., 22, 395-402.
    • (2003) J. Prot. Chem. , vol.22 , pp. 395-402
    • Pan, Y.X.1    Zhang, Z.Z.2    Guo, Z.M.3    Feng, G.Y.4    Huang, Z.D.5    He, L.6
  • 32
    • 0032077533 scopus 로고    scopus 로고
    • Using neural networks for prediction of the subcellular location of proteins
    • Reinhardt,A. and Hubbard,T. (1998) Using neural networks for prediction of the subcellular location of proteins. Nucleic Acids Res., 26, 2230-2236.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2230-2236
    • Reinhardt, A.1    Hubbard, T.2
  • 33
    • 0036083833 scopus 로고    scopus 로고
    • The SBASE protein domain library, release 9.0: An online resource for protein domain identification
    • Vlahovicek,K., Murvai,J., Barta,E. and Pongor,S. (2002) The SBASE protein domain library, release 9.0: an online resource for protein domain identification. Nucleic Acids Res., 30, 273-275.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 273-275
    • Vlahovicek, K.1    Murvai, J.2    Barta, E.3    Pongor, S.4
  • 34
    • 0032938624 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations using Markov chain models
    • Yuan,Z. (1999) Prediction of protein subcellular locations using Markov chain models. FEBS Lett., 451, 23-26.
    • (1999) FEBS Lett. , vol.451 , pp. 23-26
    • Yuan, Z.1
  • 35
    • 54749084166 scopus 로고    scopus 로고
    • An intriguing controversy over protein structural class prediction
    • Zhou,G.P. (1998) An intriguing controversy over protein structural class prediction. J. Prot. Chem., 17, 729-738.
    • (1998) J. Prot. Chem. , vol.17 , pp. 729-738
    • Zhou, G.P.1
  • 36
    • 0035400226 scopus 로고    scopus 로고
    • Some insights into protein structural class prediction
    • Zhou,G.P. and Assa-Munt,N. (2001) Some insights into protein structural class prediction. Prot. Struct. Funct. Genet., 44, 57-59.
    • (2001) Prot. Struct. Funct. Genet. , vol.44 , pp. 57-59
    • Zhou, G.P.1    Assa-Munt, N.2
  • 37
    • 0037233515 scopus 로고    scopus 로고
    • Subcellular location prediction of apoptosis proteins
    • Zhou,G.P. and Doctor,K. (2003) Subcellular location prediction of apoptosis proteins. Prot. Struct. Funct. Genet., 50, 44-48.
    • (2003) Prot. Struct. Funct. Genet. , vol.50 , pp. 44-48
    • Zhou, G.P.1    Doctor, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.