-
1
-
-
18744361871
-
Enhancement of cellular memory by reducing stochastic transitions
-
Acar M, Becskei A, van OA (2005) Enhancement of cellular memory by reducing stochastic transitions. Nature 435:228-232.
-
(2005)
Nature
, vol.435
, pp. 228-232
-
-
Acar, M.1
Becskei, A.2
Van, O.A.3
-
2
-
-
34548408283
-
Regulatory network motifs and hotspots of cancer genes in a mammalian cellular signaling network
-
Awan A, Bari H, Yan F et al (2007) Regulatory network motifs and hotspots of cancer genes in a mammalian cellular signaling network. IET Syst Biol 1:292-297.
-
(2007)
IET Syst Biol
, vol.1
, pp. 292-297
-
-
Awan, A.1
Bari, H.2
Yan, F.3
-
3
-
-
33746631391
-
Evolutionary and physiological importance of hub proteins
-
Batada NN, Hurst LD, Tyers M (2006) Evolutionary and physiological importance of hub proteins. PLoS Comput Biol 2:e88.
-
(2006)
PLoS Comput Biol
, vol.2
, pp. e88
-
-
Batada, N.N.1
Hurst, L.D.2
Tyers, M.3
-
4
-
-
25144525014
-
Core transcriptional regulatory circuitry in human embryonic stem cells
-
Boyer LA, Lee TI, Cole MF et al (2005) Core transcriptional regulatory circuitry in human embryonic stem cells. Cell 122:947-956.
-
(2005)
Cell
, vol.122
, pp. 947-956
-
-
Boyer, L.A.1
Lee, T.I.2
Cole, M.F.3
-
5
-
-
25444447105
-
Ab initio identification of putative human transcription factor binding sites by comparative genomics
-
Cora D, Herrmann C, Dieterich C et al (2005) Ab initio identification of putative human transcription factor binding sites by comparative genomics. BMC Bioinformatics 6:110.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 110
-
-
Cora, D.1
Herrmann, C.2
Dieterich, C.3
-
6
-
-
33846045953
-
Principles of microRNA regulation of a human cellular signaling network
-
Cui Q, Yu Z, Purisima EO et al (2006) Principles of microRNA regulation of a human cellular signaling network. Mol Syst Biol 2:46.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 46
-
-
Cui, Q.1
Yu, Z.2
Purisima, E.O.3
-
7
-
-
33845315897
-
MicroRNAs preferentially target the genes with high transcriptional regulation complexity
-
Cui Q, Yu Z, Pan Y et al (2007a) MicroRNAs preferentially target the genes with high transcriptional regulation complexity. Biochem Biophys Res Commun 352:733-738.
-
(2007)
Biochem Biophys Res Commun
, vol.352
, pp. 733-738
-
-
Cui, Q.1
Yu, Z.2
Pan, Y.3
-
8
-
-
34447640714
-
MicroRNA regulation and interspecific variation of gene expression
-
Cui Q, Yu Z, Purisima EO et al (2007b) MicroRNA regulation and interspecific variation of gene expression. Trends Genet 23:372-375.
-
(2007)
Trends Genet
, vol.23
, pp. 372-375
-
-
Cui, Q.1
Yu, Z.2
Purisima, E.O.3
-
9
-
-
29144505309
-
The widespread impact of mammalian microRNAs on mRNA repression and evolution
-
Farh KK, Grimson A, Jan C et al (2005) The widespread impact of mammalian microRNAs on mRNA repression and evolution. Science 310:1817-1821.
-
(2005)
Science
, vol.310
, pp. 1817-1821
-
-
Farh, K.K.1
Grimson, A.2
Jan, C.3
-
10
-
-
28344438648
-
A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis
-
Fazi F, Rosa A, Fatica A et al (2005) A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis. Cell 123:819-831.
-
(2005)
Cell
, vol.123
, pp. 819-831
-
-
Fazi, F.1
Rosa, A.2
Fatica, A.3
-
11
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist AM, Henry CS, Reed JL et al (2007) A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol Syst Biol 3:121.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 121
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
-
12
-
-
0036532226
-
Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability
-
Ferrell JE (2002) Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability. Curr Opin Cell Biol 14:140-148.
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 140-148
-
-
Ferrell, J.E.1
-
13
-
-
34250851115
-
A microRNA component of the p53 tumour suppressor network
-
He L, He X, Lim LP et al (2007) A microRNA component of the p53 tumour suppressor network. Nature 447:1130-1134.
-
(2007)
Nature
, vol.447
, pp. 1130-1134
-
-
He, L.1
He, X.2
Lim, L.P.3
-
14
-
-
84984765621
-
Canalization of development by microRNAs
-
Suppl
-
Hornstein E, Shomron N (2006) Canalization of development by microRNAs. Nat Genet 38(Suppl):S20-S24.
-
(2006)
Nat Genet
, vol.38
, pp. S20-S24
-
-
Hornstein, E.1
Shomron, N.2
-
15
-
-
24144437052
-
MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision
-
Johnston RJ Jr, Chang S, Etchberger JF et al (2005) MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision. Proc Natl Acad Sci USA 102:12449-12454.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12449-12454
-
-
Johnston, R.J.1
Chang, S.2
Etchberger, J.F.3
-
16
-
-
33846945735
-
Processing of intronic microRNAs
-
Kim YK, Kim VN (2007) Processing of intronic microRNAs. EMBO J 26:775-783.
-
(2007)
EMBO J
, vol.26
, pp. 775-783
-
-
Kim, Y.K.1
Kim, V.N.2
-
17
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A, Grun D, Poy MN et al (2005) Combinatorial microRNA target predictions. Nat Genet 37:495-500.
-
(2005)
Nat Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
-
18
-
-
33745338485
-
MicroRNAs: A new class of regulatory genes affecting metabolism
-
Krutzfeldt J, Stoffel M (2006) MicroRNAs: A new class of regulatory genes affecting metabolism. Cell Metab 4:9-12.
-
(2006)
Cell, Metab
, vol.4
, pp. 9-12
-
-
Krutzfeldt, J.1
Stoffel, M.2
-
19
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee TI, Rinaldi NJ, Robert F et al (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298:799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
-
20
-
-
33746525415
-
Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways
-
Lehner B, Crombie C, Tischler J et al (2006) Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways. Nat Genet 38:896-903.
-
(2006)
Nat Genet
, vol.38
, pp. 896-903
-
-
Lehner, B.1
Crombie, C.2
Tischler, J.3
-
21
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120:15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
22
-
-
29244437868
-
A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye
-
Li X, Carthew RW (2005) A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye. Cell 123:1267-1277.
-
(2005)
Cell
, vol.123
, pp. 1267-1277
-
-
Li, X.1
Carthew, R.W.2
-
23
-
-
9144264169
-
A map of the interactome network of the metazoan C. Elegans
-
Li S, Armstrong CM, Bertin N et al (2004) A map of the interactome network of the metazoan C. elegans. Science 303:540-543.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
-
24
-
-
33751118533
-
MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila
-
Li Y, Wang F, Lee JA et al (2006) MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila. Genes Dev 20:2793-2805.
-
(2006)
Genes Dev
, vol.20
, pp. 2793-2805
-
-
Li, Y.1
Wang, F.2
Lee, J.A.3
-
25
-
-
34548339681
-
MicroRNA regulation of human protein protein interaction network
-
Liang H, Li WH (2007) MicroRNA regulation of human protein protein interaction network. RNA 13:1402-1408.
-
(2007)
RNA
, vol.13
, pp. 1402-1408
-
-
Liang, H.1
Li, W.H.2
-
26
-
-
23644437498
-
Formation of regulatory patterns during signal propagation in a mammalian cellular network
-
Ma'ayan A, Jenkins SL, Neves S et al (2005) Formation of regulatory patterns during signal propagation in a mammalian cellular network. Science 309:1078-1083.
-
(2005)
Science
, vol.309
, pp. 1078-1083
-
-
Ma'ayan, A.1
Jenkins, S.L.2
Neves, S.3
-
27
-
-
33745463739
-
A comprehensive map of the toll-like receptor signaling network
-
2006.0015
-
Oda K, Kitano H (2006) A comprehensive map of the toll-like receptor signaling network. Mol Syst Biol 2:2006.0015.
-
(2006)
Mol Syst Biol
, vol.2
-
-
Oda, K.1
Kitano, H.2
-
28
-
-
33746889808
-
A comprehensive pathway map of epidermal growth factor receptor signaling
-
2005.0010
-
Oda K, Matsuoka Y, Funahashi A et al (2005) A comprehensive pathway map of epidermal growth factor receptor signaling. Mol Syst Biol 1:2005.0010.
-
(2005)
Mol Syst Biol
, vol.1
-
-
Oda, K.1
Matsuoka, Y.2
Funahashi, A.3
-
29
-
-
20444479428
-
C-Myc-regulated microRNAs modulate E2F1 expression
-
O'Donnell KA, Wentzel EA, Zeller KI et al (2005) c-Myc-regulated microRNAs modulate E2F1 expression. Nature 435:839-843.
-
(2005)
Nature
, vol.435
, pp. 839-843
-
-
O'Donnell, K.A.1
Wentzel, E.A.2
Zeller, K.I.3
-
30
-
-
34249822779
-
Transcriptional activation of miR-34a contributes to p53-mediated apoptosis
-
Raver-Shapira N, Marciano E, Meiri E et al (2007) Transcriptional activation of miR-34a contributes to p53-mediated apoptosis. Mol Cell 26:731-743.
-
(2007)
Mol Cell
, vol.26
, pp. 731-743
-
-
Raver-Shapira, N.1
Marciano, E.2
Meiri, E.3
-
31
-
-
9144270496
-
RegulonDB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12
-
Salgado H, Gama-Castro S, Martinez-Antonio A et al (2004) RegulonDB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. Nucleic Acids Res 32:D303-D306.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D303-D306
-
-
Salgado, H.1
Gama-Castro, S.2
Martinez-Antonio, A.3
-
32
-
-
34547555796
-
Global and local architecture of the mammalian micro- RNA-transcription factor regulatory network
-
Shalgi R, Lieber D, Oren M et al (2007) Global and local architecture of the mammalian micro- RNA-transcription factor regulatory network. PLoS Comput Biol 3:e131.
-
(2007)
PLoS Comput Biol
, vol.3
, pp. e131
-
-
Shalgi, R.1
Lieber, D.2
Oren, M.3
-
33
-
-
28944439309
-
Animal microRNAs confer robustness to gene expression and have a significant impact on 3 UTR evolution
-
Stark A, Brennecke J, Bushati N et al (2005) Animal microRNAs confer robustness to gene expression and have a significant impact on 3 UTR evolution. Cell 123:1133-1146.
-
(2005)
Cell
, vol.123
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
-
34
-
-
34249819336
-
MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals
-
Tsang J, Zhu J, van OA (2007) MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. Mol Cell 26:753-767.
-
(2007)
Mol Cell
, vol.26
, pp. 753-767
-
-
Tsang, J.1
Zhu, J.2
Van, O.A.3
-
35
-
-
23644454631
-
Network motifs are enriched with transcription factors whose transcripts have short half-lives
-
Wang E, Purisima E (2005) Network motifs are enriched with transcription factors whose transcripts have short half-lives. Trends Genet 21:492-495.
-
(2005)
Trends Genet
, vol.21
, pp. 492-495
-
-
Wang, E.1
Purisima, E.2
-
36
-
-
34447625052
-
Cancer systems biology: Exploring cancerassociated genes on cellular networks
-
Wang E, Lenferink A, O'Connor-McCourt M (2007) Cancer systems biology: Exploring cancerassociated genes on cellular networks. Cell Mol Life Sci 64:1752-1762.
-
(2007)
Cell Mol Life Sci
, vol.64
, pp. 1752-1762
-
-
Wang, E.1
Lenferink, A.2
O'Connor-McCourt, M.3
-
37
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3′?UTRs by comparison of several mammals
-
Xie X, Lu J, Kulbokas EJ et al (2005) Systematic discovery of regulatory motifs in human promoters and 3′?UTRs by comparison of several mammals. Nature 434:338-345.
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
-
38
-
-
28144458897
-
LIN-12/Notch activation leads to microRNA-mediated down-regulation of Vav in C. Elegans
-
Yoo AS, Greenwald I (2005) LIN-12/Notch activation leads to microRNA-mediated down-regulation of Vav in C. elegans. Science 310:1330-1333.
-
(2005)
Science
, vol.310
, pp. 1330-1333
-
-
Yoo, A.S.1
Greenwald, I.2
-
39
-
-
33846675660
-
Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos
-
Yu Z, Jian Z, Shen SH et al (2007) Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos. Nucleic Acids Res 35:152-164.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 152-164
-
-
Yu, Z.1
Jian, Z.2
Shen, S.H.3
-
40
-
-
33847051248
-
Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network
-
Zhang LV, King OD, Wong SL et al (2005) Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network. J Biol 4:6.
-
(2005)
J Biol
, vol.4
, pp. 6
-
-
Zhang, L.V.1
King, O.D.2
Wong, S.L.3
|