-
1
-
-
36349026128
-
Extracting semantic predications from medline citations for pharmacogenomics
-
R. B. Altman, A. K. Dunker, L. Hunter, T. Murray, and T. E. Klein (Eds.), Singapore: World Scientific
-
Ahlers CB, Fiszman M, Demner-Fushman D, Lang FM, Rindflesch TC (2007) Extracting semantic predications from medline citations for pharmacogenomics. In: Altman RB, Dunker AK, Hunter L, Murray T, Klein TE (eds) Pacific symposium on biocomputing. World Scientific, Singapore, pp 209-220.
-
(2007)
Pacific Symposium on Biocomputing
, pp. 209-220
-
-
Ahlers, C.B.1
Fiszman, M.2
Demner-Fushman, D.3
Lang, F.M.4
Rindflesch, T.C.5
-
2
-
-
0035752429
-
Effective mapping of biomedical text to the UMLS metathesaurus: the MetaMap program
-
Aronson A (2001) Effective mapping of biomedical text to the UMLS metathesaurus: the MetaMap program. In: Proceedings of AMIA symposium, pp 17-21.
-
(2001)
Proceedings of AMIA symposium
, pp. 17-21
-
-
Aronson, A.1
-
3
-
-
77955287813
-
An overview of MetaMap: historical perspective and recent advances
-
Aronson AR, Lang F-M (2010) An overview of MetaMap: historical perspective and recent advances. JAMIA 17(3): 229-236. http://metamap. nlm. nih. gov/.
-
(2010)
JAMIA
, vol.17
, Issue.3
, pp. 229-236
-
-
Aronson, A.R.1
Lang, F.-M.2
-
4
-
-
49949092526
-
DBpedia: a nucleus for a web of open data
-
Springer, Berlin
-
Auer S, Bizer C, Kobilarov G, Lehmann J, Cyganiak R, Ives Z (2007) DBpedia: a nucleus for a web of open data. In: Proceedings of the 6th international semantic web conference and 2nd Asian conference on Asian semantic web conference, ISWC'07/ASWC'07. Springer, Berlin, pp 722-735. http://dbpedia. org.
-
(2007)
Proceedings of the 6th international semantic web conference and 2nd Asian conference on Asian semantic web conference, ISWC'07/ASWC'07
, pp. 722-735
-
-
Auer, S.1
Bizer, C.2
Kobilarov, G.3
Lehmann, J.4
Cyganiak, R.5
Ives, Z.6
-
5
-
-
84880902141
-
Open information extraction from the web
-
In: Veloso MM (ed)
-
Banko M, Cafarella MJ, Soderland S, Broadhead M, Etzioni O (2007) Open information extraction from the web. In: Veloso MM (ed) IJCAI, pp 2670-2676.
-
(2007)
IJCAI
, pp. 2670-2676
-
-
Banko, M.1
Cafarella, M.J.2
Soderland, S.3
Broadhead, M.4
Etzioni, O.5
-
7
-
-
84859043926
-
Global learning of typed entailment rules
-
In: Lin D, Matsumoto Y, Mihalcea R (eds) ACL
-
Berant J, Dagan I, Goldberger J (2011) Global learning of typed entailment rules. In: Lin D, Matsumoto Y, Mihalcea R (eds) ACL. The Association for Computer Linguistics, pp 610-619.
-
(2011)
The Association for Computer Linguistics
, pp. 610-619
-
-
Berant, J.1
Dagan, I.2
Goldberger, J.3
-
10
-
-
0345863927
-
The unified medical language system (UMLS): integrating biomedical terminology
-
(Database-Issue)
-
Bodenreider O (2004) The unified medical language system (UMLS): integrating biomedical terminology. Nucleic Acids Res 32(Database-Issue): 267-270. http://www. nlm. nih. gov/research/umls.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 267-270
-
-
Bodenreider, O.1
-
11
-
-
77954650176
-
Relational duality: unsupervised extraction of semantic relations between entities on the web
-
New York
-
Bollegala DT, Matsuo Y, Ishizuka M (2010) Relational duality: unsupervised extraction of semantic relations between entities on the web. In: Proceedings of the 19th international conference on world wide web, WWW '10. ACM, New York, pp 151-160.
-
(2010)
Proceedings of the 19th international conference on world wide web, WWW '10. ACM
, pp. 151-160
-
-
Bollegala, D.T.1
Matsuo, Y.2
Ishizuka, M.3
-
13
-
-
52649147589
-
Nominalization and alternations in biomedical language
-
Cohen KB, Palmer M, Hunter L (2008) Nominalization and alternations in biomedical language. PLoS ONE 3(9): e3158.
-
(2008)
PLoS ONE
, vol.3
, Issue.9
-
-
Cohen, K.B.1
Palmer, M.2
Hunter, L.3
-
14
-
-
78149308924
-
Using text to build semantic networks for pharmacogenomics
-
Coulet A, Shah NH, Garten Y, Musen M, Altman RB (2010) Using text to build semantic networks for pharmacogenomics. J Biomed Inform 43: 1009-1019.
-
(2010)
J Biomed Inform
, vol.43
, pp. 1009-1019
-
-
Coulet, A.1
Shah, N.H.2
Garten, Y.3
Musen, M.4
Altman, R.B.5
-
15
-
-
84880906413
-
An efficient solution for mapping free text to ontology terms
-
Dai M, Shah N, Xuan W, Musen M, Watson S, Athey B, Meng F (2008) An efficient solution for mapping free text to ontology terms. In: American medical informatics association symposium on translational, bioInformatics (AMIA-TBI'08).
-
(2008)
American medical informatics association symposium on translational, bioInformatics (AMIA-TBI'08)
-
-
Dai, M.1
Shah, N.2
Xuan, W.3
Musen, M.4
Watson, S.5
Athey, B.6
Meng, F.7
-
16
-
-
84875467080
-
Lightly supervised acquisition of named entities and linguistic patterns for multilingual text mining
-
doi: 10. 1007/s10115-012-0502-0
-
de Pablo-Sánchez C, Segura-Bedmar I, Martínez P, Iglesias-Maqueda A Lightly supervised acquisition of named entities and linguistic patterns for multilingual text mining. Knowl Inf Syst, 1-23. doi: 10. 1007/s10115-012-0502-0.
-
Knowl Inf Syst
, pp. 1-23
-
-
de Pablo-Sánchez, C.1
Segura-Bedmar, I.2
Martínez, P.3
Iglesias-Maqueda, A.4
-
17
-
-
80053288463
-
Identifying relations for open information extraction
-
Association for Computational Linguistics, Stroudsburg
-
Fader A, Soderland S, Etzioni O (2011) Identifying relations for open information extraction. In: Proceedings of the conference on empirical methods in natural language processing, EMNLP '11. Association for Computational Linguistics, Stroudsburg, pp 1535-1545.
-
(2011)
Proceedings of the conference on empirical methods in natural language processing, EMNLP '11
, pp. 1535-1545
-
-
Fader, A.1
Soderland, S.2
Etzioni, O.3
-
19
-
-
0000679216
-
Distributional structure
-
Harris Z (1954) Distributional structure. Word 10(23): 146-162.
-
(1954)
Word
, vol.10
, Issue.23
, pp. 146-162
-
-
Harris, Z.1
-
21
-
-
84863070454
-
Ontology-based biological relation extraction system
-
T. Jiang, U.-C. Yang, Y.-P. P. Chen, and L. Wong (Eds.), London: Imperial College Press
-
Huang M, Zhu X, Ding S, Yu H, Li M (2006) Ontology-based biological relation extraction system. In: Jiang T, Yang U-C, Chen Y-PP, Wong L (eds) APBC. Imperial College Press, London, pp 327-336.
-
(2006)
Apbc
, pp. 327-336
-
-
Huang, M.1
Zhu, X.2
Ding, S.3
Yu, H.4
Li, M.5
-
22
-
-
33646130383
-
A hybrid method for relation extraction from biomedical literature
-
Huang M, Zhu X, Li M (2006) A hybrid method for relation extraction from biomedical literature. Int J Med Inform 75(6): 443-455.
-
(2006)
Int J Med Inform
, vol.75
, Issue.6
, pp. 443-455
-
-
Huang, M.1
Zhu, X.2
Li, M.3
-
23
-
-
0035042776
-
A literature network of human genes for high-throughput analysis of gene expression
-
Jenssen TK, Laegreid A, Komorowski J, Hovig E (2001) A literature network of human genes for high-throughput analysis of gene expression. Nat Genet 28(1): 21-28.
-
(2001)
Nat Genet
, vol.28
, Issue.1
, pp. 21-28
-
-
Jenssen, T.K.1
Laegreid, A.2
Komorowski, J.3
Hovig, E.4
-
25
-
-
9944223230
-
Semantic annotation, indexing, and retrieval
-
Kiryakov A, Popov B, Terziev I, Manov D, Ognyanoff D (2004) Semantic annotation, indexing, and retrieval. Web Semant 2: 49-79.
-
(2004)
Web Semant
, vol.2
, pp. 49-79
-
-
Kiryakov, A.1
Popov, B.2
Terziev, I.3
Manov, D.4
Ognyanoff, D.5
-
26
-
-
0034790672
-
Document language models, query models, and risk minimization for information retrieval
-
ACM, New York
-
Lafferty J, Zhai C (2001) Document language models, query models, and risk minimization for information retrieval. In: Proceedings of the 24th annual international ACM SIGIR conference on research and development in information retrieval, SIGIR '01. ACM, New York, pp 111-119.
-
(2001)
Proceedings of the 24th annual international ACM SIGIR conference on research and development in information retrieval, SIGIR '01
, pp. 111-119
-
-
Lafferty, J.1
Zhai, C.2
-
28
-
-
41449115531
-
Kernel-based learning for biomedical relation extraction
-
Li J, Zhang Z, Li X, Chen H (2008) Kernel-based learning for biomedical relation extraction. J Am Soc Inf Sci Technol 59: 756-769.
-
(2008)
J Am Soc Inf Sci Technol
, vol.59
, pp. 756-769
-
-
Li, J.1
Zhang, Z.2
Li, X.3
Chen, H.4
-
30
-
-
84992162860
-
Discovery of inference rules for question-answering
-
Lin D, Pantel P (2001) Discovery of inference rules for question-answering. Nat Lang Eng 7(4): 343-360.
-
(2001)
Nat Lang Eng
, vol.7
, Issue.4
, pp. 343-360
-
-
Lin, D.1
Pantel, P.2
-
33
-
-
84892855808
-
Automated assignment of medical subject headings
-
Nelson S, Nelson SJ, Aronson AR, Doszkocs TE, Ms HFC (1999) Automated assignment of medical subject headings. In: Proceedings of the American medical informatics association (AMIA) annual symposium, ACL '04. http://www. nlm. nih. gov/mesh/.
-
(1999)
Proceedings of the American medical informatics association (AMIA) annual symposium, ACL '04
-
-
Nelson, S.1
Nelson, S.J.2
Aronson, A.R.3
Doszkocs, T.E.4
Ms, H.F.C.5
-
35
-
-
0035230208
-
Bidirectional incremental parsing for automatic pathway identification with combinatory categorial grammar
-
Park JC, Kim HS, jae Kim J (2001) Bidirectional incremental parsing for automatic pathway identification with combinatory categorial grammar. In: Pacific symposium on biocomputing, pp 396-407.
-
(2001)
Pacific symposium on biocomputing
, pp. 396-407
-
-
Park, J.C.1
Kim, H.S.2
Jae Kim, J.3
-
36
-
-
84874191349
-
A semantic approach for the requirement-driven discovery of web resources in the life sciences
-
doi: 10. 1007/s10115-012-0498-5
-
Pérez-Catalán M, Berlanga R, Sanz I, Aramburu M A semantic approach for the requirement-driven discovery of web resources in the life sciences. Knowl Inf Syst, pp 1-20. doi: 10. 1007/s10115-012-0498-5.
-
Knowl Inf Syst
, pp. 1-20
-
-
Pérez-Catalán, M.1
Berlanga, R.2
Sanz, I.3
Aramburu, M.4
-
37
-
-
38349118307
-
Text processing through web services: calling Whatizit
-
Rebholz-Schuhmann D, Arregui M, Gaudan S, Kirsch H, Jimeno-Yepes A (2008) Text processing through web services: calling Whatizit. Bioinformatics 24(2): 296-298. http://www. ebi. ac. uk/webservices/whatizit/info. jsf.
-
(2008)
Bioinformatics
, vol.24
, Issue.2
, pp. 296-298
-
-
Rebholz-Schuhmann, D.1
Arregui, M.2
Gaudan, S.3
Kirsch, H.4
Jimeno-Yepes, A.5
-
38
-
-
77949315091
-
Measuring prediction capacity of individual verbs for the identification of protein interactions
-
Rebholz-Schuhmann D, Jimeno-Yepes A, Arregui M, Kirsch H (2010) Measuring prediction capacity of individual verbs for the identification of protein interactions. J Biomed Inform 43(2): 200-207.
-
(2010)
J Biomed Inform
, vol.43
, Issue.2
, pp. 200-207
-
-
Rebholz-Schuhmann, D.1
Jimeno-Yepes, A.2
Arregui, M.3
Kirsch, H.4
-
39
-
-
77951575659
-
CALBC silver standard corpus
-
Rebholz-Schuhmann D et al (2010) CALBC silver standard corpus. J Bioinform Comput Biol 8(1): 163-179.
-
(2010)
J Bioinform Comput Biol
, vol.8
, Issue.1
, pp. 163-179
-
-
Rebholz-Schuhmann, D.1
-
42
-
-
0032596539
-
Learning dictionaries for information extraction by multi-level bootstrapping
-
In: Hendler J, Subramanian D (eds)AAAI Press / The MIT Press
-
Riloff E, Jones R (1999) Learning dictionaries for information extraction by multi-level bootstrapping. In: Hendler J, Subramanian D (eds) AAAI/IAAI. AAAI Press / The MIT Press, pp 474-479.
-
(1999)
AAAI/IAAI
, pp. 474-479
-
-
Riloff, E.1
Jones, R.2
-
44
-
-
80053239630
-
Learning first-order Horn clauses from web text
-
Association for Computational Linguistics, Stroudsburg
-
Schoenmackers S, Etzioni O, Weld DS, Davis J (2010) Learning first-order Horn clauses from web text. In: Proceedings of the 2010 conference on empirical methods in natural language processing, EMNLP '10, Association for Computational Linguistics, Stroudsburg, pp 1088-1098.
-
(2010)
Proceedings of the 2010 conference on empirical methods in natural language processing, EMNLP '10
, pp. 1088-1098
-
-
Schoenmackers, S.1
Etzioni, O.2
Weld, D.S.3
Davis, J.4
-
46
-
-
0034517666
-
SNOMED RT and SNOMED CT. promise of an international clinical terminology
-
Spackman K (2000) SNOMED RT and SNOMED CT. promise of an international clinical terminology. MD Comput 17(6): 29. http://www. nlm. nih. gov/research/umls/Snomed/snomed_main. html.
-
(2000)
MD Comput
, vol.17
, Issue.6
, pp. 29
-
-
Spackman, K.1
-
47
-
-
35148867982
-
Yago: a core of semantic knowledge
-
ACM, New York
-
Suchanek FM, Kasneci G, Weikum G (2007) Yago: a core of semantic knowledge. In: Proceedings of the 16th international conference on world wide web, WWW '07. ACM, New York, pp 697-706. http://www. mpi-inf. mpg. de/yago-naga/yago/.
-
(2007)
Proceedings of the 16th international conference on world wide web, WWW '07
, pp. 697-706
-
-
Suchanek, F.M.1
Kasneci, G.2
Weikum, G.3
-
48
-
-
77951543836
-
SOFIE: a self-organizing framework for information extraction
-
ACM, New York
-
Suchanek FM, Sozio M, Weikum G (2009) SOFIE: a self-organizing framework for information extraction. In: Proceedings of the 18th international conference on world wide web, WWW '09. ACM, New York, pp 631-640.
-
(2009)
Proceedings of the 18th international conference on world wide web, WWW '09
, pp. 631-640
-
-
Suchanek, F.M.1
Sozio, M.2
Weikum, G.3
-
49
-
-
70449695892
-
Learning entailment rules for unary templates
-
Association for Computational Linguistics, Stroudsburg
-
Szpektor I, Dagan I (2008) Learning entailment rules for unary templates. In: Proceedings of the 22nd international conference on computational linguistics, volume 1, COLING '08. Association for Computational Linguistics, Stroudsburg, pp 849-856.
-
(2008)
Proceedings of the 22nd international conference on computational linguistics, volume 1, COLING '08
, pp. 849-856
-
-
Szpektor, I.1
Dagan, I.2
-
50
-
-
77956517407
-
Discovering drug-drug interactions: a text-mining and reasoning approach based on properties of drug metabolism
-
Tari L, Anwar S, Liang S, Cai J, Baral C (2010) Discovering drug-drug interactions: a text-mining and reasoning approach based on properties of drug metabolism. Bioinformatics 26(18).
-
(2010)
Bioinformatics
, vol.26
, Issue.18
-
-
Tari, L.1
Anwar, S.2
Liang, S.3
Cai, J.4
Baral, C.5
-
51
-
-
0242559066
-
Extraction of protein interaction information from unstructured text using a context-free grammar
-
Temkin JM, Gilder MR (2003) Extraction of protein interaction information from unstructured text using a context-free grammar. Bioinformatics 19(16): 2046-2053.
-
(2003)
Bioinformatics
, vol.19
, Issue.16
, pp. 2046-2053
-
-
Temkin, J.M.1
Gilder, M.R.2
-
53
-
-
84873560385
-
TextRunner: open information extraction on the web
-
Association for Computational Linguistics, Stroudsburg
-
Yates A, Cafarella M, Banko M, Etzioni O, Broadhead M, Soderland S (2007) TextRunner: open information extraction on the web. In: Proceedings of human language technologies: the annual conference of the North American chapter of the association for computational linguistics: demonstrations, NAACL-Demonstrations '07. Association for Computational Linguistics, Stroudsburg, pp 25-26.
-
(2007)
Proceedings of human language technologies: The annual conference of the North American chapter of the association for computational linguistics: demonstrations, NAACL-Demonstrations '07
, pp. 25-26
-
-
Yates, A.1
Cafarella, M.2
Banko, M.3
Etzioni, O.4
Broadhead, M.5
Soderland, S.6
-
54
-
-
65349191273
-
Unsupervised methods for determining object and relation synonyms on the web
-
Yates A, Etzioni O (2009) Unsupervised methods for determining object and relation synonyms on the web. J Artif Intell Res 34: 255-296.
-
(2009)
J Artif Intell Res
, vol.34
, pp. 255-296
-
-
Yates, A.1
Etzioni, O.2
-
55
-
-
33947307025
-
Recognition of protein/gene names from text using an ensemble of classifiers
-
Zhou G, Shen D, Zhang J, Su J, Tan S-H (2005) Recognition of protein/gene names from text using an ensemble of classifiers. BMC Bioinform 6(S-1).
-
(2005)
BMC Bioinform
, vol.6
, Issue.S-1
-
-
Zhou, G.1
Shen, D.2
Zhang, J.3
Su, J.4
Tan, S.-H.5
-
56
-
-
84865644621
-
StatSnowball: a statistical approach to extracting entity relationships
-
ACM, New York
-
Zhu J, Nie Z, Liu X, Zhang B, Wen J-R (2009) StatSnowball: a statistical approach to extracting entity relationships. In: Proceedings of the 18th international conference on world wide web, WWW '09. ACM, New York, pp 101-110.
-
(2009)
Proceedings of the 18th international conference on world wide web, WWW '09
, pp. 101-110
-
-
Zhu, J.1
Nie, Z.2
Liu, X.3
Zhang, B.4
Wen, J.-R.5
|