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Volumn 59, Issue 5, 2008, Pages 756-769

Kernel-based learning for biomedical relation extraction

Author keywords

[No Author keywords available]

Indexed keywords

BIOMEDICAL CORPORA; BIOMEDICAL RELATION EXTRACTION; CONTEXTUAL INFORMATION; KERNEL FUNCTIONS;

EID: 41449115531     PISSN: 15322882     EISSN: 15322890     Source Type: Journal    
DOI: 10.1002/asi.20791     Document Type: Article
Times cited : (58)

References (41)
  • 6
    • 1942419006 scopus 로고    scopus 로고
    • Convolution Kernels for Natural Language
    • Retrieved January 1,2007, from
    • Collins, M., & Duffy, N. (2001 ). Convolution Kernels for Natural Language. Advances in Neural Information Processing Systems, 14. Retrieved January 1,2007, from http://books.nips.cc/papers/files/nips14/AA58.pdf
    • (2001) Advances in Neural Information Processing Systems , vol.14
    • Collins, M.1    Duffy, N.2
  • 9
    • 2942549190 scopus 로고    scopus 로고
    • PreBIND and textomy: Mining the biomedical literature for protein-protein interactions using a support vector machine
    • Article, Retrieved January 1, 2007, from
    • Donaldson, I., Martin, J., de Bruijn, B., Wolting, C., Lay, V., Tuekam, B., et al. (2003). PreBIND and textomy: Mining the biomedical literature for protein-protein interactions using a support vector machine. BMC Bioinformatics, 4, Article 11. Retrieved January 1, 2007, from http://www.pubmedcentral.nih. gov/articlerender.fcgi?artid=153503
    • (2003) BMC Bioinformatics , vol.4 , pp. 11
    • Donaldson, I.1    Martin, J.2    de Bruijn, B.3    Wolting, C.4    Lay, V.5    Tuekam, B.6
  • 10
    • 0035236048 scopus 로고    scopus 로고
    • GENIES: A natural language processing system for the extraction of molecular pathways from journal articles
    • Friedman, C., Kra, P., Yu, H., Krauthammer, M., & Rzhetsky, A. (2001). GENIES: A natural language processing system for the extraction of molecular pathways from journal articles. Bioinformatics, 17(Suppl. 1), S74-S82.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Friedman, C.1    Kra, P.2    Yu, H.3    Krauthammer, M.4    Rzhetsky, A.5
  • 11
    • 33847294345 scopus 로고    scopus 로고
    • ReIEx: Relation extraction using dependency parse trees
    • Fundei, K., Küffner, R., & Zimmer, R. (2007). ReIEx: Relation extraction using dependency parse trees. Bioinformatics, 23(3), 365-371.
    • (2007) Bioinformatics , vol.23 , Issue.3 , pp. 365-371
    • Fundei, K.1    Küffner, R.2    Zimmer, R.3
  • 12
    • 0037250015 scopus 로고    scopus 로고
    • Protein structures and information extraction from biological texts: The PASTA System
    • Gaizauskas, R., Demetriou, G., Artymiuk, P.J., & Willett, P. (2003). Protein structures and information extraction from biological texts: the PASTA System. Bioinformatics, 19(1), 135-143.
    • (2003) Bioinformatics , vol.19 , Issue.1 , pp. 135-143
    • Gaizauskas, R.1    Demetriou, G.2    Artymiuk, P.J.3    Willett, P.4
  • 14
    • 41449086896 scopus 로고    scopus 로고
    • Haussler, D. (1999). Convolution Kernels on Discrete Structures (Tech. Rep. UCS-CRL-99-10). University of California at Santa Cruz. Retrieved January 1, 2007, from http://citeseer.ist.psu.edu/haussler99convolution.html
    • Haussler, D. (1999). Convolution Kernels on Discrete Structures (Tech. Rep. UCS-CRL-99-10). University of California at Santa Cruz. Retrieved January 1, 2007, from http://citeseer.ist.psu.edu/haussler99convolution.html
  • 15
    • 33947304181 scopus 로고    scopus 로고
    • Overview of BioCreAtlvE: Critical assessment of information extraction for biology
    • Retrieved January 1, 2007, from
    • Hirschman, L., Yeh, A., Blaschke, C., & Valencia, A. (2005). Overview of BioCreAtlvE: Critical assessment of information extraction for biology. BMC Bioinformatics, 6(Suppl. 1). Retrieved January 1, 2007, from http://www.pubmedcentral.nih.gov/articlerender.fcgi7artid= 1869002
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 1
    • Hirschman, L.1    Yeh, A.2    Blaschke, C.3    Valencia, A.4
  • 16
    • 0035042776 scopus 로고    scopus 로고
    • A literature network of human genes for high-throughput analysis of gene expression
    • Jenssen, T.K., Laegreid, A., Komorowski, J., & Hovig, E. (2001). A literature network of human genes for high-throughput analysis of gene expression. Nature Genetics, 28(1), 21-28.
    • (2001) Nature Genetics , vol.28 , Issue.1 , pp. 21-28
    • Jenssen, T.K.1    Laegreid, A.2    Komorowski, J.3    Hovig, E.4
  • 19
    • 33646016255 scopus 로고    scopus 로고
    • Lease, M., & Charniak, E. (2005). Parsing biomedical literature. In R. Dale, K.-F. Wong, J. Su, & O.Y. Kwong (Eds.), Lecture Notes in Computer Science: 3651. Proceedings of the Second International Joint Conference on Natural Language Processing (IJCNLP). (pp. 58-69). Berlin: Springer-Verlag.
    • Lease, M., & Charniak, E. (2005). Parsing biomedical literature. In R. Dale, K.-F. Wong, J. Su, & O.Y. Kwong (Eds.), Lecture Notes in Computer Science: Vol. 3651. Proceedings of the Second International Joint Conference on Natural Language Processing (IJCNLP). (pp. 58-69). Berlin: Springer-Verlag.
  • 20
    • 0242606438 scopus 로고    scopus 로고
    • A shallow parser based on closed-class words to capture relations in biomedical text
    • Leroy, G., Chen, H.C., & Martinez, J.D. (2003). A shallow parser based on closed-class words to capture relations in biomedical text. Journal of Biomedical Informatics, 36(3), 145-158.
    • (2003) Journal of Biomedical Informatics , vol.36 , Issue.3 , pp. 145-158
    • Leroy, G.1    Chen, H.C.2    Martinez, J.D.3
  • 22
    • 0035002541 scopus 로고    scopus 로고
    • Mining literature for protein-protein interactions
    • Marcotte, E.M., Xenarios, I., & Eisenberg, D. (2001). Mining literature for protein-protein interactions. Bioinformatics, 17(4), 359-363.
    • (2001) Bioinformatics , vol.17 , Issue.4 , pp. 359-363
    • Marcotte, E.M.1    Xenarios, I.2    Eisenberg, D.3
  • 24
    • 12344328483 scopus 로고    scopus 로고
    • Extracting gene pathway relations using a hybrid grammar: The Arizona relation parser
    • McDonald, D., Chen, H., Su, H., & Byron, M. (2004). Extracting gene pathway relations using a hybrid grammar: The Arizona relation parser. Bioinformatics, 20(18), 3370-3378.
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3370-3378
    • McDonald, D.1    Chen, H.2    Su, H.3    Byron, M.4
  • 26
    • 0141515736 scopus 로고    scopus 로고
    • MedScan, a natural language processing engine for MEDLINE Abstracts
    • Novichkova, S., Egorov, S., & Daraselia, N. (2003). MedScan, a natural language processing engine for MEDLINE Abstracts. Bioinformatics, 19(13), 1699-1706.
    • (2003) Bioinformatics , vol.19 , Issue.13 , pp. 1699-1706
    • Novichkova, S.1    Egorov, S.2    Daraselia, N.3
  • 27
    • 0035230208 scopus 로고    scopus 로고
    • Park, J.C., Kim, H.S., & Kim, J.J. (2001). Bidirectional incremental parsing for automatic pathway identification with combinatory categorial grammar. Pacific Symposium on Biocomputing, 6 (pp. 396-407). Retrieved January 1, 2007, from http://psb.stanford.edu/psb-online/proceedings/psb01/ jcpark.pdf
    • Park, J.C., Kim, H.S., & Kim, J.J. (2001). Bidirectional incremental parsing for automatic pathway identification with combinatory categorial grammar. Pacific Symposium on Biocomputing, Vol. 6 (pp. 396-407). Retrieved January 1, 2007, from http://psb.stanford.edu/psb-online/proceedings/psb01/ jcpark.pdf
  • 28
    • 0036366650 scopus 로고    scopus 로고
    • Pustejovsky, J., Castaño, J., Zhang, J., Kotecki, M., & Cochran, B. (2002). Robust relational parsing over biomedical literature: Extracting inhibit relations. Pacific Symposium on Biocomputing, 7 (pp. 362-373). Retrieved January 1, 2007, from http://psb.stanford.edu/psb-online/ proceedings/psb02/pustejovsk.pdf
    • Pustejovsky, J., Castaño, J., Zhang, J., Kotecki, M., & Cochran, B. (2002). Robust relational parsing over biomedical literature: Extracting inhibit relations. Pacific Symposium on Biocomputing, Vol. 7 (pp. 362-373). Retrieved January 1, 2007, from http://psb.stanford.edu/psb-online/ proceedings/psb02/pustejovsk.pdf
  • 29
    • 0000110017 scopus 로고    scopus 로고
    • EDGAR: Extraction of drugs, genes, and relations from the biomedical literature
    • Retrieved January 1, 2007, from
    • Rindflesch, T.C., Tanabe, L., Weinstein, J.N., & Hunter, L. (2000). EDGAR: Extraction of drugs, genes, and relations from the biomedical literature. Pacific Symposium on Biocomputing, Vol. 5 (pp. 514-525). Retrieved January 1, 2007, from http://psb.stanford.edu/psb-online/proceedings/psb00/rindflesch.pdf
    • (2000) Pacific Symposium on Biocomputing , vol.5 , pp. 514-525
    • Rindflesch, T.C.1    Tanabe, L.2    Weinstein, J.N.3    Hunter, L.4
  • 30
    • 80053274458 scopus 로고    scopus 로고
    • Rosario, B., & Hearst, M. (2005). Multi-way relation classification: Application to protein-protein interactions. In Proceedings of theConference on Human Language Technology and Empirical Methods in Natural Language Processing (HLT/EMNLP). (pp. 732-739). Morristwon, NJ: ACL.
    • Rosario, B., & Hearst, M. (2005). Multi-way relation classification: Application to protein-protein interactions. In Proceedings of theConference on Human Language Technology and Empirical Methods in Natural Language Processing (HLT/EMNLP). (pp. 732-739). Morristwon, NJ: ACL.
  • 31
    • 25144520247 scopus 로고    scopus 로고
    • ABNER: An open source tool for automatically tagging genes, proteins, and other entity names in text
    • Settles, B. (2005). ABNER: An open source tool for automatically tagging genes, proteins, and other entity names in text. Bioinformatics, 21(14), 3191-3192.
    • (2005) Bioinformatics , vol.21 , Issue.14 , pp. 3191-3192
    • Settles, B.1
  • 32
    • 0742321913 scopus 로고    scopus 로고
    • Mining the biomedical literature in the genomic era: An overview
    • Shatkay, H., & Feldman, R. (2003). Mining the biomedical literature in the genomic era: An overview. Journal of Computational Biology, 10(6), 821-855.
    • (2003) Journal of Computational Biology , vol.10 , Issue.6 , pp. 821-855
    • Shatkay, H.1    Feldman, R.2
  • 33
    • 0002971646 scopus 로고    scopus 로고
    • Bibliometrics: Information retrieval visualization from co-occurrences of gene names in MEDLINE Abstracts
    • Retrieved January 1,2007, from
    • Stapley, B.J., & Benoit, G. (2000). Bibliometrics: Information retrieval visualization from co-occurrences of gene names in MEDLINE Abstracts. Pacific Symposium on Biocomputing, Vol. 5 (pp. 526-537). Retrieved January 1,2007, from http://psb.stanford.edu/psb-online/proceedings/psb00/stapley.pdf
    • (2000) Pacific Symposium on Biocomputing , vol.5 , pp. 526-537
    • Stapley, B.J.1    Benoit, G.2
  • 35
    • 0000206156 scopus 로고    scopus 로고
    • Automatic extraction of protein interactions from scientic abstracts
    • Retrieved January 1, 2007, from
    • Thomas, J., Milward, D., Ouzounis, C., Pulman, S., & Carroll, M. (2000). Automatic extraction of protein interactions from scientic abstracts. Pacific Symposium on Biocomputing, Vol. 5 (pp. 538-549). Retrieved January 1, 2007, from http://psb.stariford.edu/psb-online/proceedings/psb00/thomas.pdf
    • (2000) Pacific Symposium on Biocomputing , vol.5 , pp. 538-549
    • Thomas, J.1    Milward, D.2    Ouzounis, C.3    Pulman, S.4    Carroll, M.5
  • 36
    • 0035236527 scopus 로고    scopus 로고
    • Event extraction from biomedical papers using a full parser
    • Retrieved January 1, 2007, from
    • Yakushiji, A., Tateisi, Y., Miyao, Y., & Tsujii, J. (2001). Event extraction from biomedical papers using a full parser. Pacific Symposium on Biocomputing, Vol. 6 (pp. 408-419). Retrieved January 1, 2007, from http://psb.stanford.edu/psb-online/proceedings/psb01/yakushiji.pdf
    • (2001) Pacific Symposium on Biocomputing , vol.6 , pp. 408-419
    • Yakushiji, A.1    Tateisi, Y.2    Miyao, Y.3    Tsujii, J.4
  • 41
    • 30344452268 scopus 로고    scopus 로고
    • Localization site prediction for membrane proteins by integrating rule and SVM classification
    • Zhou, S., & Wang, K. (2005). Localization site prediction for membrane proteins by integrating rule and SVM classification. IEEE Transactions on Knowledge and Data Engineering, 17(12), 1694-1705.
    • (2005) IEEE Transactions on Knowledge and Data Engineering , vol.17 , Issue.12 , pp. 1694-1705
    • Zhou, S.1    Wang, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.