메뉴 건너뛰기




Volumn 43, Issue 2, 2010, Pages 200-207

Measuring prediction capacity of individual verbs for the identification of protein interactions

Author keywords

Information extraction; Protein protein interaction; Semantic relations; Text mining

Indexed keywords

COMPLEX TASK; EXTRACTION SOLUTION; IDENTIFICATION OF PROTEINS; INDEPENDENT VARIABLES; INFORMATION EXTRACTION; LANGUAGE PATTERNS; MEDLINE; POST-TRANSLATIONAL MODIFICATIONS; PREDICTIVE CAPACITY; PROTEIN INTERACTION; PROTEIN-PROTEIN INTERACTIONS; SCIENTIFIC EVIDENCE; SCIENTIFIC LITERATURE; SYSTEMATIC ANALYSIS; TEXT MINING; WEB PAGE;

EID: 77949315091     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2009.09.007     Document Type: Article
Times cited : (18)

References (28)
  • 1
  • 2
    • 27544448536 scopus 로고    scopus 로고
    • Implementing the iHOP concept for navigation of biomedical literature
    • Hoffmann R., and Valencia A. Implementing the iHOP concept for navigation of biomedical literature. Bioinformatics 21 Suppl. 2 (2005) ii252-ii258
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 2
    • Hoffmann, R.1    Valencia, A.2
  • 3
    • 33645104154 scopus 로고    scopus 로고
    • Extraction of regulatory gene/protein networks from Medline
    • Saric J., et al. Extraction of regulatory gene/protein networks from Medline. Bioinformatics 22 6 (2006) 645-650
    • (2006) Bioinformatics , vol.22 , Issue.6 , pp. 645-650
    • Saric, J.1
  • 4
    • 0242559066 scopus 로고    scopus 로고
    • Extraction of protein interaction information from unstructured text using a context-free grammar
    • Temkin J.M., and Gilder M.R. Extraction of protein interaction information from unstructured text using a context-free grammar. Bioinformatics 19 16 (2003) 2046-2053
    • (2003) Bioinformatics , vol.19 , Issue.16 , pp. 2046-2053
    • Temkin, J.M.1    Gilder, M.R.2
  • 5
    • 0035236048 scopus 로고    scopus 로고
    • GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles
    • Friedman C., et al. GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics 17 Suppl. 1 (2001) S74-S82
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Friedman, C.1
  • 7
    • 0002284942 scopus 로고    scopus 로고
    • Identifying the interaction between genes and gene products based on frequently seen verbs in Medline abstracts
    • Sekimizu T., et al. Identifying the interaction between genes and gene products based on frequently seen verbs in Medline abstracts. Genome Informatics (1998) 62-71
    • (1998) Genome Informatics , pp. 62-71
    • Sekimizu, T.1
  • 8
    • 0035104866 scopus 로고    scopus 로고
    • Automated extraction of information on protein-protein interactions from the biological literature
    • Ono T., et al. Automated extraction of information on protein-protein interactions from the biological literature. Bioinformatics 17 2 (2001) 155-161
    • (2001) Bioinformatics , vol.17 , Issue.2 , pp. 155-161
    • Ono, T.1
  • 9
    • 0036366650 scopus 로고    scopus 로고
    • Robust relational parsing over biomedical literature: Extracting inhibit relations
    • Pustejovsky J et al. Robust relational parsing over biomedical literature: extracting inhibit relations. In: Pac Symp Biocomput; 2001. p. 362-373.
    • (2001) Pac Symp Biocomput , pp. 362-373
    • Pustejovsky, J.1
  • 10
    • 0242606438 scopus 로고    scopus 로고
    • A shallow parser based on closed-class words to capture relations in biomedical text
    • Leroy G., et al. A shallow parser based on closed-class words to capture relations in biomedical text. J Biomed Inform 36 3 (2003) 145-158
    • (2003) J Biomed Inform , vol.36 , Issue.3 , pp. 145-158
    • Leroy, G.1
  • 11
    • 0035230208 scopus 로고    scopus 로고
    • Bidirectional incremental parsing for automatic pathway identification with combinatory categorial grammar
    • Park JC et al. Bidirectional incremental parsing for automatic pathway identification with combinatory categorial grammar. In: Pac Symp Biocomput; 2001. p. 396-407.
    • (2001) Pac Symp Biocomput , pp. 396-407
    • Park, J.C.1
  • 12
    • 34547771661 scopus 로고    scopus 로고
    • Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks
    • Daraselia N., et al. Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks. BMC Bioinformatics 10 8 (2007) 243
    • (2007) BMC Bioinformatics , vol.10 , Issue.8 , pp. 243
    • Daraselia, N.1
  • 13
    • 12344282809 scopus 로고    scopus 로고
    • Discovering patterns to extract protein-protein interactions from full texts
    • Huang M., et al. Discovering patterns to extract protein-protein interactions from full texts. Bioinformatics 20 18 (2004) 3604-3612
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3604-3612
    • Huang, M.1
  • 14
    • 12144290446 scopus 로고    scopus 로고
    • GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
    • Rzhetsky A., et al. GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. J Biomed Inform 37 1 (2004) 43-53
    • (2004) J Biomed Inform , vol.37 , Issue.1 , pp. 43-53
    • Rzhetsky, A.1
  • 15
    • 16244423656 scopus 로고    scopus 로고
    • Comparative experiments on learning information extractors for proteins and their interactions
    • Bunescu R., Ge R., Kate R.J., Marcotte E.M., Mooney R.J., Ramani A.K., et al. Comparative experiments on learning information extractors for proteins and their interactions. Artif Intell Med 33 2 (2005) 139-155
    • (2005) Artif Intell Med , vol.33 , Issue.2 , pp. 139-155
    • Bunescu, R.1    Ge, R.2    Kate, R.J.3    Marcotte, E.M.4    Mooney, R.J.5    Ramani, A.K.6
  • 18
    • 33947304479 scopus 로고    scopus 로고
    • Systematic feature evaluation for gene name recognition
    • Hakenberg J., et al. Systematic feature evaluation for gene name recognition. BMC Bioinformatics 6 Suppl. 1 (2005) S9
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 1
    • Hakenberg, J.1
  • 19
    • 33947321307 scopus 로고    scopus 로고
    • Overview of BioCreAtIvE task 1B: normalized gene lists
    • Hirschman L., et al. Overview of BioCreAtIvE task 1B: normalized gene lists. BMC Bioinformatics 6 Suppl. 1 (2005) S11
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 1
    • Hirschman, L.1
  • 20
    • 33846664313 scopus 로고    scopus 로고
    • EBIMed: text crunching to gather facts for proteins from Medline
    • Rebholz-Schuhmann D., et al. EBIMed: text crunching to gather facts for proteins from Medline. Bioinformatics 23 2 (2007) e237-e244
    • (2007) Bioinformatics , vol.23 , Issue.2
    • Rebholz-Schuhmann, D.1
  • 21
    • 35748966977 scopus 로고    scopus 로고
    • Learning string similarity measures for gene/protein name dictionary look-up using logistic regression
    • Tsuruoka Y., et al. Learning string similarity measures for gene/protein name dictionary look-up using logistic regression. Bioinformatics 23 20 (2007) 2768-2774
    • (2007) Bioinformatics , vol.23 , Issue.20 , pp. 2768-2774
    • Tsuruoka, Y.1
  • 22
    • 24644505245 scopus 로고    scopus 로고
    • Resolving abbreviations to their senses in Medline
    • Gaudan S., Kirsch H., and Rebholz-Schuhmann D. Resolving abbreviations to their senses in Medline. Bioinformatics 21 18 (2005) 3658-3664
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3658-3664
    • Gaudan, S.1    Kirsch, H.2    Rebholz-Schuhmann, D.3
  • 23
    • 77949311910 scopus 로고    scopus 로고
    • Rebholz-Schuhmann D et al. Annotation and disambiguation of semantic types in biomedical text: a cascaded approach to named entity recognition. In: Workshop on Multi-Dimensional Markup in NLP, EACL 2006, Trente, Italy; 2006.
    • Rebholz-Schuhmann D et al. Annotation and disambiguation of semantic types in biomedical text: a cascaded approach to named entity recognition. In: Workshop on "Multi-Dimensional Markup in NLP", EACL 2006, Trente, Italy; 2006.
  • 26
    • 30344472426 scopus 로고    scopus 로고
    • BioThesaurus: a web-based thesaurus of protein and gene names
    • Liu H., Hu Z., Zhang J., and Wu C. BioThesaurus: a web-based thesaurus of protein and gene names. Bioinformatics 22 1 (2006) 103-105
    • (2006) Bioinformatics , vol.22 , Issue.1 , pp. 103-105
    • Liu, H.1    Hu, Z.2    Zhang, J.3    Wu, C.4
  • 27
    • 33646475127 scopus 로고    scopus 로고
    • Distributed modules for text annotation and IE applied to the biomedical domain
    • Kirsch H., et al. Distributed modules for text annotation and IE applied to the biomedical domain. Int J Med Inform 75 6 (2006) 496-500
    • (2006) Int J Med Inform , vol.75 , Issue.6 , pp. 496-500
    • Kirsch, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.