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Volumn 3, Issue 9, 2008, Pages

Nominalization and alternations in biomedical language

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; BIOMEDICAL ENGINEERING; COMPUTER PROGRAM; DATA MINING; INFORMATION PROCESSING; LANGUAGE PROCESSING; SEMANTICS;

EID: 52649147589     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0003158     Document Type: Article
Times cited : (45)

References (65)
  • 2
    • 33645983416 scopus 로고    scopus 로고
    • The Proposition Bank: An annotated corpus of semantic roles
    • Palmer Martha, Daniel Gildea, Paul Kingsbury (2005) The Proposition Bank: an annotated corpus of semantic roles. Computational Linguistics 31(1): 71-105.
    • (2005) Computational Linguistics , vol.31 , Issue.1 , pp. 71-105
    • Martha, P.1    Gildea, D.2    Kingsbury, P.3
  • 3
    • 84982002027 scopus 로고
    • Syntactic formatting of scientific information
    • reprinted in Kittredge and Lehrberger 1982, pp 9-26
    • Sager Naomi (1972) Syntactic formatting of scientific information. AFIPS Conf. Proc. 41, pp 791-800. reprinted in Kittredge and Lehrberger (1982), pp 9-26.
    • (1972) AFIPS Conf. Proc , vol.41 , pp. 791-800
    • Naomi, S.1
  • 4
    • 52649145352 scopus 로고
    • Sublanguage: Linguistic phenomenon, computational tool
    • Sager Naomi (1986) Sublanguage: linguistic phenomenon, computational tool. in Grishman and Kittredge (1986), pp 1-17.
    • (1986) Grishman and Kittredge (1986) , pp. 1-17
    • Naomi, S.1
  • 6
    • 0036706501 scopus 로고    scopus 로고
    • Two biomedical sublanguages: A description based on the theories of Zellig Harris
    • Friedman Carol, Pauline Kra, Andrey Rzhetsky (2002) Two biomedical sublanguages: a description based on the theories of Zellig Harris. Journal of Biomedical Informatics 35: 222-235.
    • (2002) Journal of Biomedical Informatics , vol.35 , pp. 222-235
    • Carol, F.1    Kra, P.2    Rzhetsky, A.3
  • 7
    • 52649153592 scopus 로고
    • Automatic translation and the concept of sublanguage
    • Lehrberger John (1982) Automatic translation and the concept of sublanguage. In Kittredge and Lehrberger (1982), pp 81-106.
    • (1982) Kittredge and Lehrberger (1982) , pp. 81-106
    • John, L.1
  • 11
    • 0002834444 scopus 로고    scopus 로고
    • Extracting molecular binding relationships from biomedical text
    • Association for Computational Linguistics
    • Rindflesch Thomas C, Jayant V Rajan, Lawrence Hunter (2000) Extracting molecular binding relationships from biomedical text Proceedings of ANLP-NAACL 2000 188-195, Association for Computational Linguistics.
    • (2000) Proceedings of ANLP-NAACL , pp. 188-195
    • Rindflesch Thomas, C.1    Jayant, V.2    Rajan, L.H.3
  • 12
    • 20744446607 scopus 로고    scopus 로고
    • Literature mining and database annotation of protein phosphorylation using a rule-based system
    • Hu ZZ, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH (2005) Literature mining and database annotation of protein phosphorylation using a rule-based system. Bioinformatics 21(11): 2759-2765.
    • (2005) Bioinformatics , vol.21 , Issue.11 , pp. 2759-2765
    • Hu, Z.Z.1    Narayanaswamy, M.2    Ravikumar, K.E.3    Vijay-Shanker, K.4    Wu, C.H.5
  • 13
    • 84860538817 scopus 로고    scopus 로고
    • Beyond the clause: Extraction of phosphorylation information from Medline abstracts
    • Narayanaswamy M, Ravikumar KE, Vijay-Shanker K (2005) Beyond the clause: extraction of phosphorylation information from Medline abstracts. Bioinformatics 21(Suppl. 1): 319-327.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1 , pp. 319-327
    • Narayanaswamy, M.1    Ravikumar, K.E.2    Vijay-Shanker, K.3
  • 15
    • 0035104866 scopus 로고    scopus 로고
    • Extraction of information on protein-protein interactions from the biological literature
    • Ono T, Hishigaki H, Tanigami A, Takagi T (2001) Extraction of information on protein-protein interactions from the biological literature. Bioinformatics 17(2): 155-161.
    • (2001) Bioinformatics , vol.17 , Issue.2 , pp. 155-161
    • Ono, T.1    Hishigaki, H.2    Tanigami, A.3    Takagi, T.4
  • 16
    • 0036366650 scopus 로고    scopus 로고
    • Robust relational parsing over biomedical literature: Extracting Inhibit relations
    • Pustejovsky James, Jose Castaño, Zhang J (2002) Robust relational parsing over biomedical literature: extracting Inhibit relations. Pacific Symposium on Biocomputing 7. pp 362-373.
    • (2002) Pacific Symposium on Biocomputing , vol.7 , pp. 362-373
    • James, P.1    Zhang, J.J.2
  • 17
    • 84995352090 scopus 로고    scopus 로고
    • Using dependency parsing and probabilistic inference to extract relationships between genes, proteins and malignancies implicit among multiple biomedical research abstracts
    • Association for Computational Linguistics
    • Goertzel Ben, Hugo Pinto, Ari Heljakka, Izabela Freire Goertzel, Mike Ross, Cassio Pennachin (2006) Using dependency parsing and probabilistic inference to extract relationships between genes, proteins and malignancies implicit among multiple biomedical research abstracts. Proceedings of the BioNLP'06 Workshop on Linking Natural Language Processing and Biology, pp 104-111, Association for Computational Linguistics.
    • (2006) Proceedings of the BioNLP'06 Workshop on Linking Natural Language Processing and Biology , pp. 104-111
    • Ben, G.1    Pinto, H.2    Heljakka, A.3    Freire Goertzel, I.4    Ross, M.5    Pennachin, C.6
  • 19
    • 0036371839 scopus 로고    scopus 로고
    • Filling preposition-based templates to captures information from medical abtracts
    • Goody Leroy, Hsinchun Chen (2002) Filling preposition-based templates to captures information from medical abtracts. Pacific Sympsium on Biocomputing 7. pp 350-361.
    • (2002) Pacific Sympsium on Biocomputing , vol.7 , pp. 350-361
    • Leroy, G.1    Chen, H.2
  • 20
    • 0242606438 scopus 로고    scopus 로고
    • A shallow parser based on closed-class words to capture relations in bimedical text
    • Leroy Gondy, Hsinchun Chen, Jesse D Martinez (2003) A shallow parser based on closed-class words to capture relations in bimedical text. Journal of Biomedical Informatics 36(3): 145-158.
    • (2003) Journal of Biomedical Informatics , vol.36 , Issue.3 , pp. 145-158
    • Gondy, L.1    Chen, H.2    Martinez, J.D.3
  • 21
    • 15944404318 scopus 로고    scopus 로고
    • Genescene: An ontology-enhanced integration of linguistic and co-occurrence based relations in biomedical texts
    • Leroy Gondy, Hsinchun Chen (2005) Genescene: An ontology-enhanced integration of linguistic and co-occurrence based relations in biomedical texts. Journal of the American Society for Information Science and Technology 56(5): 457-468.
    • (2005) Journal of the American Society for Information Science and Technology , vol.56 , Issue.5 , pp. 457-468
    • Gondy, L.1    Chen, H.2
  • 22
    • 84872265192 scopus 로고    scopus 로고
    • Partee Barbara H, Alice G ter Meulen, Robert Wall (1993) Mathematical methods in linguistics. Kluwer Academic Publishers.
    • Partee Barbara H, Alice G ter Meulen, Robert Wall (1993) Mathematical methods in linguistics. Kluwer Academic Publishers.
  • 24
    • 45749085699 scopus 로고    scopus 로고
    • Parsing arguments of nominalizations in English and Chinese
    • Association for Computational Linguistics
    • Pradhan Sameer, Honglin Sun, Wayne Ward, James H Martin, Dan Jurafsky (2004) Parsing arguments of nominalizations in English and Chinese. HTL-NAACL 2004: Short papers, pp 141-144, Association for Computational Linguistics.
    • (2004) HTL-NAACL 2004: Short papers , pp. 141-144
    • Sameer, P.1    Sun, H.2    Ward, W.3    Martin, J.H.4    Jurafsky, D.5
  • 26
    • 45749110595 scopus 로고    scopus 로고
    • NP-external arguments: A study of argument sharing in English
    • Association for Computational Linguistics
    • Meyers Adam, Ruth Reeves, Catherine Macleod (2004c) NP-external arguments: a study of argument sharing in English. Proc. 2nd ACL Workshop on Multi-Word Expressions, pp 96-103, Association for Computational Linguistics.
    • (2004) Proc. 2nd ACL Workshop on Multi-Word Expressions , pp. 96-103
    • Adam, M.1    Reeves, R.2    Macleod, C.3
  • 27
    • 13244267011 scopus 로고    scopus 로고
    • PASBio: Predicate-argument structures for event extraction in molecular biology
    • Wattarujeekrit Tuangthong, Parantu K Shah, Nigel Collier (2004) PASBio: Predicate-argument structures for event extraction in molecular biology. BMC Bioinformatics 5: 155.
    • (2004) BMC Bioinformatics , vol.5 , pp. 155
    • Tuangthong, W.1    Shah, P.K.2    Collier, N.3
  • 29
    • 85135546358 scopus 로고    scopus 로고
    • Shah Parantu K, Lars J Jensen, Stephanie Boue, Peer Bork (2005) Extraction of transcript diversity from scientific literature. PLoS Computational Biology 1(1): 67-73.
    • Shah Parantu K, Lars J Jensen, Stephanie Boue, Peer Bork (2005) Extraction of transcript diversity from scientific literature. PLoS Computational Biology 1(1): 67-73.
  • 31
    • 85045732262 scopus 로고    scopus 로고
    • BIOSMILE: Adapting semantic role labeling for biomedical verbs: an exponential model coupled with automatically generated template features
    • Association for Computational Linguistics
    • Tsai Richard Tzong-Han, Wen-Chi Chou, Yu-Chun Lin, Cheng-Lung Sung, Wei Ku, et al. (2005) BIOSMILE: Adapting semantic role labeling for biomedical verbs: an exponential model coupled with automatically generated template features. Proceedings of the BioNLP'06 Workshop on Linking Natural language Processing and Biology, pp 57-64, Association for Computational Linguistics.
    • (2005) Proceedings of the BioNLP'06 Workshop on Linking Natural language Processing and Biology , pp. 57-64
    • Tsai, R.1    Tzong-Han, W.-C.C.2    Lin, Y.-C.3    Sung, C.-L.4    Ku, W.5
  • 32
    • 84925996568 scopus 로고    scopus 로고
    • Annotating noun argument structure for NomBank
    • Meyers Adam, Ruth Reeves, Catherine Macleod, Rachel Szekely, et al. (2004a) Annotating noun argument structure for NomBank. Proc. LREC 2004. pp 803-4306.
    • (2004) Proc. LREC , pp. 803-4306
    • Adam, M.1    Reeves, R.2    Macleod, C.3    Szekely, R.4
  • 33
    • 33750727188 scopus 로고    scopus 로고
    • The NomBank project: An interim report
    • Association for Computational Linguistics
    • Meyers Adam, Ruth Reeves, Catherine Macleod, Rachel Szekely, Veronika Zielinsika, et al. (2004b) The NomBank project: an interim report. Frontiers in Corpus Annotation, pp 24-31, Association for Computational Linguistics.
    • (2004) Frontiers in Corpus Annotation , pp. 24-31
    • Adam, M.1    Reeves, R.2    Macleod, C.3    Szekely, R.4    Zielinsika, V.5
  • 34
    • 84872274585 scopus 로고    scopus 로고
    • Tateisi Yuka, Tomoko Ohta, Jun-ichi Tsujii (2004) Annotation of predicate-argument structure on molecular biology text. IJCNLP04.
    • Tateisi Yuka, Tomoko Ohta, Jun-ichi Tsujii (2004) Annotation of predicate-argument structure on molecular biology text. IJCNLP04.
  • 37
    • 33749531938 scopus 로고    scopus 로고
    • Lexical word formation
    • In The, Ch. 19, pp, Huddleston and Pullum, editors
    • Bauer Laurie, Rodney Huddleston (2002) Lexical word formation. In The Cambridge grammar of the English language, Ch. 19, pp 1621-1721, Huddleston and Pullum, editors.
    • (2002) Cambridge grammar of the English language , pp. 1621-1721
    • Laurie, B.1    Huddleston, R.2
  • 38
    • 84872275142 scopus 로고    scopus 로고
    • (undated) Annotation guidelines for NomBank - noun argument structure for PropBank
    • Unpublished manuscript
    • Meyers Adam (undated) Annotation guidelines for NomBank - noun argument structure for PropBank. Unpublished manuscript.
    • Adam, M.1
  • 39
    • 84872264838 scopus 로고    scopus 로고
    • Dahl Deborah A, Martha S Palmer, Rebecca J Passonneau (1987) Nominalizations in PUNDIT. Proceedings of the Association for Computational Linguistics. pp 131-139.
    • Dahl Deborah A, Martha S Palmer, Rebecca J Passonneau (1987) Nominalizations in PUNDIT. Proceedings of the Association for Computational Linguistics. pp 131-139.
  • 44
    • 84872269956 scopus 로고    scopus 로고
    • Roeper Thomas, Angeliek van Hout(2006) The representation of movement in - ability nominalizations: Evidence for coven category movement, edge phenomena, and local LF. In Proceedings of the Saarbrücken conference on nominalizations and quantification. Monika Rathbert, ed.
    • Roeper Thomas, Angeliek van Hout(2006) The representation of movement in - ability nominalizations: Evidence for coven category movement, edge phenomena, and local LF. In Proceedings of the Saarbrücken conference on nominalizations and quantification. Monika Rathbert, ed.
  • 45
    • 84872267503 scopus 로고    scopus 로고
    • Kulick Seth, Ann Bies, Mark Liberman, Mark Mandel, Ryan McDonald Martha Palmer, et al. (2004) Integrated annotation for biomedical information extraction. Proceedings of BioLINK 2004: Linking Biological Literature, Ontologies and Databases. pp 61-68.
    • Kulick Seth, Ann Bies, Mark Liberman, Mark Mandel, Ryan McDonald Martha Palmer, et al. (2004) Integrated annotation for biomedical information extraction. Proceedings of BioLINK 2004: Linking Biological Literature, Ontologies and Databases. pp 61-68.
  • 46
    • 4944229711 scopus 로고    scopus 로고
    • GENIA corpus - a semantically annotated corpus for bio-textmining
    • Kim Jin-Dong, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii (2003) GENIA corpus - a semantically annotated corpus for bio-textmining. Bioinformatics 19(Suppl. 1): 180-182.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1 , pp. 180-182
    • Jin-Dong, K.1    Ohta, T.2    Tateisi, Y.3    Tsujii, J.4
  • 48
    • 52649125717 scopus 로고    scopus 로고
    • Draft version in Quality control of corpus annotation through reliability measures: tutorial notes. Association for Computational Linguistics
    • Artstein Ron, Massimo Poesio (2007) Agreement measures for natural language processing. Draft version in Quality control of corpus annotation through reliability measures: tutorial notes. Association for Computational Linguistics.
    • (2007) Agreement measures for natural language processing
    • Ron, A.1    Poesio, M.2
  • 49
    • 33947407243 scopus 로고    scopus 로고
    • A critical review of PASBio's argument structures for biomedical verbs
    • Cohen K Bretonnel, Lawrence Hunter (2006) A critical review of PASBio's argument structures for biomedical verbs. BMC Bioinformatics 7(Suppl. 3): S5.
    • (2006) BMC Bioinformatics , vol.7 , Issue.SUPPL. 3
    • Cohen, K.1    Bretonnel, L.H.2
  • 50
    • 23844488601 scopus 로고    scopus 로고
    • Fillmore Charles J, Christopher R Johnson, Miriam RL Petruck (2003) Background to FrameNet. International Journal of Lexicography 16(3): 235-250.
    • Fillmore Charles J, Christopher R Johnson, Miriam RL Petruck (2003) Background to FrameNet. International Journal of Lexicography 16(3): 235-250.
  • 51
    • 84872262575 scopus 로고    scopus 로고
    • Ogren Philip V (2006a) Knowtator: a Protege plug-in for annotated corpus construction. Proceedings of HLT-NAACL 2006, Companion pp 273-275.
    • Ogren Philip V (2006a) Knowtator: a Protege plug-in for annotated corpus construction. Proceedings of HLT-NAACL 2006, Companion volume. pp 273-275.
  • 52
    • 34547904706 scopus 로고    scopus 로고
    • Knowtator: A plug-in for creating training and evaluation data sets for Biomedical Natural Language systems
    • Ogren Philip V (2006b) Knowtator: a plug-in for creating training and evaluation data sets for Biomedical Natural Language systems. Proceedings of the 9th International Protégé Conference. pp 73-76.
    • (2006) Proceedings of the 9th International Protégé Conference , pp. 73-76
    • Ogren Philip, V.1
  • 53
  • 54
    • 0004003965 scopus 로고    scopus 로고
    • 2nd edition. Edinburgh University Press
    • McEnery Tony, Andew Wilson (2001) Corpus Linguistics, 2nd edition. Edinburgh University Press.
    • (2001) Corpus Linguistics
    • Tony, M.1    Wilson, A.2
  • 55
    • 0032438455 scopus 로고    scopus 로고
    • Ki-ras codon 12 point mutational activation in Hong Kong colorectal carcinoma patients
    • Ko JM, Cheung MH, Wong CM, Lau KW, Tang CM, Kwan MW, Lung ML (1998) Ki-ras codon 12 point mutational activation in Hong Kong colorectal carcinoma patients. Cancer Letters 134(2): 169-176.
    • (1998) Cancer Letters , vol.134 , Issue.2 , pp. 169-176
    • Ko, J.M.1    Cheung, M.H.2    Wong, C.M.3    Lau, K.W.4    Tang, C.M.5    Kwan, M.W.6    Lung, M.L.7
  • 56
    • 84872274931 scopus 로고    scopus 로고
    • Hirschman Lynette, Naomi Sager (1982) Automatic information formatting of a medical sublanguage. Ch. 2 of Kittredge and Lehrberger (1982), pp 27-78.
    • Hirschman Lynette, Naomi Sager (1982) Automatic information formatting of a medical sublanguage. Ch. 2 of Kittredge and Lehrberger (1982), pp 27-78.
  • 57
    • 84872271035 scopus 로고    scopus 로고
    • Herbst Thomas, David Heath, Ian F Roe, Dieter Götz, with Michael Klotz (2004) A valency dictionary of English: a corpus-based analysis of the complementation patterns of English verbs, nouns and adjectives. Mouton de Gruyter.
    • Herbst Thomas, David Heath, Ian F Roe, Dieter Götz, with Michael Klotz (2004) A valency dictionary of English: a corpus-based analysis of the complementation patterns of English verbs, nouns and adjectives. Mouton de Gruyter.
  • 58
    • 84872265129 scopus 로고    scopus 로고
    • Rappaport-Hovav Malka, Beth Levin (1998) Building verb meanings. In Butt and Geuder (1998), The projection of arguments: lexical and compositional factors. pp 97-134.
    • Rappaport-Hovav Malka, Beth Levin (1998) Building verb meanings. In Butt and Geuder (1998), The projection of arguments: lexical and compositional factors. pp 97-134.
  • 59
    • 52649102000 scopus 로고
    • The role or syntax in the sublanguage of medical diagnostic statements
    • Dunham George (1986) The role or syntax in the sublanguage of medical diagnostic statements. In Grishman and Kittredge (1986), pp 175-194.
    • (1986) Grishman and Kittredge (1986) , pp. 175-194
    • George, D.1
  • 60
    • 1542539798 scopus 로고
    • Constraining the interpretation of nominal compounds in a limited context
    • Fnin Timothy W (1986) Constraining the interpretation of nominal compounds in a limited context. In Grishnian and Kittredge (1986), pp 163-173.
    • (1986) Grishnian and Kittredge (1986) , pp. 163-173
    • Fnin Timothy, W.1
  • 61
    • 85046608093 scopus 로고
    • Variation and homogeneity of sublanguages
    • Kittredge Richard (1982) Variation and homogeneity of sublanguages. In Kittredge and Lehrberger (1982), pp 107-137.
    • (1982) Kittredge and Lehrberger (1982) , pp. 107-137
    • Richard, K.1


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