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Volumn 9, Issue 12, 2013, Pages

A Network Inference Method for Large-Scale Unsupervised Identification of Novel Drug-Drug Interactions

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EID: 84892778654     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003374     Document Type: Article
Times cited : (64)

References (40)
  • 1
    • 58149269468 scopus 로고    scopus 로고
    • Use of prescription and over-the-counter medications and dietary supplements among older adults in the United States
    • Qato DM, Alexander GC, Conti RM, Johnson M, Schumm P, et al. (2008) Use of prescription and over-the-counter medications and dietary supplements among older adults in the United States. JAMA 300: 2867-2878.
    • (2008) JAMA , vol.300 , pp. 2867-2878
    • Qato, D.M.1    Alexander, G.C.2    Conti, R.M.3    Johnson, M.4    Schumm, P.5
  • 2
    • 68249162213 scopus 로고    scopus 로고
    • Predicting drug-drug interactions: an FDA perspective
    • Zhang L, Zhang YD, Zhao P, Huang SM, (2009) Predicting drug-drug interactions: an FDA perspective. AAPS J 11: 300-306.
    • (2009) AAPS J , vol.11 , pp. 300-306
    • Zhang, L.1    Zhang, Y.D.2    Zhao, P.3    Huang, S.M.4
  • 3
    • 67650488269 scopus 로고    scopus 로고
    • Synergistic drug combi-nations tend to improve therapeutically relevant selectivity
    • Lehár J, Krueger AS, Avery W, Heilbut AM, Johansen LM, et al. (2009) Synergistic drug combi-nations tend to improve therapeutically relevant selectivity. Nat Biotechnol 27: 659-666.
    • (2009) Nat Biotechnol , vol.27 , pp. 659-666
    • Lehár, J.1    Krueger, A.S.2    Avery, W.3    Heilbut, A.M.4    Johansen, L.M.5
  • 5
    • 34247277741 scopus 로고    scopus 로고
    • Antibiotic interactions that select against resistance
    • Chait R, Craney A, Kishony R, (2007) Antibiotic interactions that select against resistance. Nature 446: 668-671.
    • (2007) Nature , vol.446 , pp. 668-671
    • Chait, R.1    Craney, A.2    Kishony, R.3
  • 6
    • 33747620519 scopus 로고    scopus 로고
    • Systems biology and combination therapy in the quest for clinical efficacy
    • Fitzgerald JB, Schoeberl B, Nielsen UB, Sorger PK, (2006) Systems biology and combination therapy in the quest for clinical efficacy. Nat Chem Biol 2: 458-466.
    • (2006) Nat Chem Biol , vol.2 , pp. 458-466
    • Fitzgerald, J.B.1    Schoeberl, B.2    Nielsen, U.B.3    Sorger, P.K.4
  • 7
    • 54249155522 scopus 로고    scopus 로고
    • Network pharmacology: The next paradigm in drug discovery
    • Hopkins AL, (2008) Network pharmacology: The next paradigm in drug discovery. Nat Chem Biol 4: 682-690.
    • (2008) Nat Chem Biol , vol.4 , pp. 682-690
    • Hopkins, A.L.1
  • 8
    • 70349847876 scopus 로고    scopus 로고
    • Network analyses in systems pharmacology
    • Berger S, Iyengar R, (2009) Network analyses in systems pharmacology. Bioinformatics 25: 2466-2472.
    • (2009) Bioinformatics , vol.25 , pp. 2466-2472
    • Berger, S.1    Iyengar, R.2
  • 9
    • 59349083179 scopus 로고    scopus 로고
    • Mechanisms of drug combinations: Interaction and network perspectives
    • Jia J, Zhu F, Ma X, Cao Z, Li Y, et al. (2009) Mechanisms of drug combinations: Interaction and network perspectives. Nat Rev Drug Discov 8: 111-128.
    • (2009) Nat Rev Drug Discov , vol.8 , pp. 111-128
    • Jia, J.1    Zhu, F.2    Ma, X.3    Cao, Z.4    Li, Y.5
  • 10
    • 82355160710 scopus 로고    scopus 로고
    • Network-based analysis and characterization of adverse drug-drug interactions
    • Takarabe M, Shigemizu D, Kotera M, Goto S, Kanehisa M, (2011) Network-based analysis and characterization of adverse drug-drug interactions. J Chem Inf Model 51: 2977-2985.
    • (2011) J Chem Inf Model , vol.51 , pp. 2977-2985
    • Takarabe, M.1    Shigemizu, D.2    Kotera, M.3    Goto, S.4    Kanehisa, M.5
  • 11
    • 78650373804 scopus 로고    scopus 로고
    • Network medicine: A network-based approach to human disease
    • Barabási AL, Gulbahce N, Loscalzo J, (2011) Network medicine: A network-based approach to human disease. Nat Rev Genet 12: 58-68.
    • (2011) Nat Rev Genet , vol.12 , pp. 58-68
    • Barabási, A.L.1    Gulbahce, N.2    Loscalzo, J.3
  • 12
    • 14644396645 scopus 로고    scopus 로고
    • Functional cartography of complex metabolic networks
    • Guimerà R, Amaral LAN, (2005) Functional cartography of complex metabolic networks. Nature 433: 895-900.
    • (2005) Nature , vol.433 , pp. 895-900
    • Guimerà, R.1    Amaral, L.A.N.2
  • 13
    • 34547830837 scopus 로고    scopus 로고
    • A network-based method for target selection in metabolic networks
    • Guimerà R, Sales-Pardo M, Amaral L, (2007) A network-based method for target selection in metabolic networks. Bioinformatics 23: 1616-1622.
    • (2007) Bioinformatics , vol.23 , pp. 1616-1622
    • Guimerà, R.1    Sales-Pardo, M.2    Amaral, L.3
  • 15
    • 84855272311 scopus 로고    scopus 로고
    • Prediction of drug combinations by integrating molecular and pharmacological data
    • Zhao X, Iskar M, Zeller G, Kuhn M, van Noort V, et al. (2011) Prediction of drug combinations by integrating molecular and pharmacological data. PLoS Comput Biol 7: e1002323.
    • (2011) PLoS Comput Biol , vol.7
    • Zhao, X.1    Iskar, M.2    Zeller, G.3    Kuhn, M.4    van Noort, V.5
  • 16
    • 84864369297 scopus 로고    scopus 로고
    • Mechanism-independent method for predicting response to multidrug combinations in bacteria
    • Wood K, Nishida S, Sontag ED, Cluzel P, (2012) Mechanism-independent method for predicting response to multidrug combinations in bacteria. Proc Natl Acad Sci USA 109: 12254-12259.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 12254-12259
    • Wood, K.1    Nishida, S.2    Sontag, E.D.3    Cluzel, P.4
  • 17
    • 2942659840 scopus 로고    scopus 로고
    • Complex networks: Augmenting the framework for the study of complex systems
    • Amaral LAN, Ottino JM, (2004) Complex networks: Augmenting the framework for the study of complex systems. Eur Phys J B 38: 147-162.
    • (2004) Eur Phys J B , vol.38 , pp. 147-162
    • Amaral, L.A.N.1    Ottino, J.M.2
  • 19
    • 76049100050 scopus 로고    scopus 로고
    • Missing and spurious interactions and the reconstruction of complex networks
    • Guimerà R, Sales-Pardo M, (2009) Missing and spurious interactions and the reconstruction of complex networks. Proc Natl Acad Sci U S A 106: 22073-22078.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 22073-22078
    • Guimerà, R.1    Sales-Pardo, M.2
  • 20
    • 33645396484 scopus 로고    scopus 로고
    • Functional classification of drugs by properties of their pairwise interactions
    • Yeh P, Tschumi AI, Kishony R, (2006) Functional classification of drugs by properties of their pairwise interactions. Nat Genet 38: 489-494.
    • (2006) Nat Genet , vol.38 , pp. 489-494
    • Yeh, P.1    Tschumi, A.I.2    Kishony, R.3
  • 22
    • 33847611532 scopus 로고    scopus 로고
    • Networks from drug-drug surfaces
    • Yeh P, Kishony R, (2007) Networks from drug-drug surfaces. Mol Syst Biol 3: 85.
    • (2007) Mol Syst Biol , vol.3 , pp. 85
    • Yeh, P.1    Kishony, R.2
  • 23
    • 84925899978 scopus 로고
    • Social structure from multiple networks. i. blockmodels of roles and positions
    • White HC, Boorman SA, Breiger RL, (1976) Social structure from multiple networks. i. blockmodels of roles and positions. Am J Sociol 81: 730-780.
    • (1976) Am J Sociol , vol.81 , pp. 730-780
    • White, H.C.1    Boorman, S.A.2    Breiger, R.L.3
  • 25
    • 0442296603 scopus 로고    scopus 로고
    • Estimation and prediction for stochastic blockstructures
    • Nowicki K, Snijders TAB, (2001) Estimation and prediction for stochastic blockstructures. J Am Stat Assoc 96: 1077-1087.
    • (2001) J Am Stat Assoc , vol.96 , pp. 1077-1087
    • Nowicki, K.1    Snijders, T.A.B.2
  • 26
    • 84255196314 scopus 로고    scopus 로고
    • Communities, modules and large-scale structure in networks
    • Newman MEJ, (2011) Communities, modules and large-scale structure in networks. Nat Phys 8: 25-31.
    • (2011) Nat Phys , vol.8 , pp. 25-31
    • Newman, M.E.J.1
  • 30
    • 78651287426 scopus 로고    scopus 로고
    • Drugbank 3.0: A comprehensive resource for 'omics' research on drugs
    • Knox C, Law V, Jewison T, Liu P, Ly S, et al. (2011) Drugbank 3.0: A comprehensive resource for 'omics' research on drugs. Nucleic Acids Res 39: D1035-D1041.
    • (2011) Nucleic Acids Res , vol.39
    • Knox, C.1    Law, V.2    Jewison, T.3    Liu, P.4    Ly, S.5
  • 31
    • 0020083498 scopus 로고
    • The meaning and use of the area under a receiver operating characteristic (ROC) curve
    • Hanley J, McNeil B, (1982) The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 143: 29-36.
    • (1982) Radiology , vol.143 , pp. 29-36
    • Hanley, J.1    McNeil, B.2
  • 33
    • 84255172340 scopus 로고    scopus 로고
    • Predicting adverse drug events using pharmacological network models
    • Cami A, Arnold A, Manzi S, Reis B, (2011) Predicting adverse drug events using pharmacological network models. Sci Transl Med 3: 114ra127.
    • (2011) Sci Transl Med , vol.3
    • Cami, A.1    Arnold, A.2    Manzi, S.3    Reis, B.4
  • 36
    • 84859264011 scopus 로고    scopus 로고
    • A co-module approach for elucidating drug-disease associations and revealing their molecular basis
    • Zhao S, Li S, (2012) A co-module approach for elucidating drug-disease associations and revealing their molecular basis. Bioinformatics 28: 955-961.
    • (2012) Bioinformatics , vol.28 , pp. 955-961
    • Zhao, S.1    Li, S.2
  • 38
    • 84866276354 scopus 로고    scopus 로고
    • Predicting human preferences using the block structure of complex social networks
    • Guimerà R, Sales-Pardo M, (2012) Predicting human preferences using the block structure of complex social networks. PLoS One 7: e44620.
    • (2012) PLoS One , vol.7
    • Guimerà, R.1    Sales-Pardo, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.