-
1
-
-
50649109231
-
Genome-wide analyses of alternative splicing in plants: opportunities and challenges
-
Barbazuk, W. B., Y. Fu, and K. M. McGinnis, 2008 Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res. 18: 1381-1392.
-
(2008)
Genome Res
, vol.18
, pp. 1381-1392
-
-
Barbazuk, W.B.1
Fu, Y.2
McGinnis, K.M.3
-
2
-
-
60349124979
-
Mononucleotide repeats represent an important source of polymorphic microsatellite markers in Aspergillus nidulans
-
Christians, J. K., and C. A. Watt, 2009 Mononucleotide repeats represent an important source of polymorphic microsatellite markers in Aspergillus nidulans. Molecular Ecology Resources 9: 572-578.
-
(2009)
Molecular Ecology Resources
, vol.9
, pp. 572-578
-
-
Christians, J.K.1
Watt, C.A.2
-
3
-
-
73449116042
-
Tandem repeat distribution of gene transcripts in three plant families
-
da Maia, L. C., V. Q. de Souza, M. M. Kopp, F. I. F. de Carvalho, and A. C. de Oliveira, 2009 Tandem repeat distribution of gene transcripts in three plant families. Genet. Mol. Biol. 32: 822-833.
-
(2009)
Genet. Mol. Biol.
, vol.32
, pp. 822-833
-
-
da Maia, L.C.1
de Souza, V.Q.2
Kopp, M.M.3
de Carvalho, F.I.F.4
de Oliveira, A.C.5
-
4
-
-
0034695931
-
Distributions of dimeric tandem repeats in non-coding and coding DNA sequences
-
Dokholyan, N. V., S. V. Buldyrev, S. Havlin, and H. E. Stanley, 2000 Distributions of dimeric tandem repeats in non-coding and coding DNA sequences. J. Theor. Biol. 202: 273-282.
-
(2000)
J. Theor. Biol
, vol.202
, pp. 273-282
-
-
Dokholyan, N.V.1
Buldyrev, V.2
Havlin, S.3
Stanley, H.E.4
-
5
-
-
0142184516
-
A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription
-
Fujimori, S., T. Washio, K. Higo, Y. Ohtomo, K. Murakami et al., 2003 A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription. FEBS Lett. 554: 17-22.
-
(2003)
FEBS Lett
, vol.554
, pp. 17-22
-
-
Fujimori, S.1
Washio, T.2
Higo, K.3
Ohtomo, Y.4
Murakami, K.5
-
6
-
-
84865067382
-
Beyond junk-variable tandem repeats as facilitators of rapid evolution of regulatory and coding sequences
-
Gemayel, R., J. Cho, S. Boeynaems, and K. J. Verstrepen, 2012 Beyond junk-variable tandem repeats as facilitators of rapid evolution of regulatory and coding sequences. Genes 3: 461-480.
-
(2012)
Genes
, vol.3
, pp. 461-480
-
-
Gemayel, R.1
Cho, J.2
Boeynaems, S.3
Verstrepen, K.J.4
-
7
-
-
78149432728
-
Variable tandem repeats accelerate evolution of coding and regulatory sequences
-
Gemayel, R., M. D. Vinces, M. Legendre, and K. J. Verstrepen, 2010 Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu. Rev. Genet. 44: 445-477.
-
(2010)
Annu. Rev. Genet
, vol.44
, pp. 445-477
-
-
Gemayel, R.1
Vinces, M.D.2
Legendre, M.3
Verstrepen, K.J.4
-
8
-
-
66449106867
-
Gene regulation by sense-antisense overlap of polyadenylation signals
-
Gu, R., Z. Zhang, J. N. DeCerbo, and G. G. Carmichael, 2009 Gene regulation by sense-antisense overlap of polyadenylation signals. RNA 15: 1154-1163.
-
(2009)
RNA
, vol.15
, pp. 1154-1163
-
-
Gu, R.1
Zhang, Z.2
DeCerbo, J.N.3
Carmichael, G.G.4
-
9
-
-
0028952245
-
Simple repetitive DNA sequences from primates: compilation and analysis
-
Jurka, J., and C. Pethiyagoda, 1995 Simple repetitive DNA sequences from primates: compilation and analysis. J. Mol. Evol. 40: 120-126.
-
(1995)
J. Mol. Evol
, vol.40
, pp. 120-126
-
-
Jurka, J.1
Pethiyagoda, C.2
-
10
-
-
84859513087
-
A noncoding RNA antisense to Moesin at 5p14.1 in autism
-
Kerin, T., A. Ramanathan, K. Rivas, N. Grepo, G. A. Coetzee et al., 2012 A noncoding RNA antisense to Moesin at 5p14.1 in autism. Sci. Transl. Med. 4: 128ra40-128ra40.
-
(2012)
Sci. Transl. Med.
, vol.4
-
-
Kerin, T.1
Ramanathan, A.2
Rivas, K.3
Grepo, N.4
Coetzee, G.A.5
-
11
-
-
84892703358
-
Genome-wide computational analysis of Chlamydomonas reinhardtii promoters
-
OhioLINK ETD Center. Available at:
-
Kokulapalan, W., 2011 Genome-wide computational analysis of Chlamydomonas reinhardtii promoters. OhioLINK ETD Center. Available at: https://etd.ohiolink.edu/ap:10:0::NO:10:P10_ETD_SUBID:57668.
-
(2011)
-
-
Kokulapalan, W.1
-
12
-
-
82355186181
-
In silico analysis of SSRs in mitochondrial genomes of plants
-
Kuntal, H., and V. Sharma, 2011 In silico analysis of SSRs in mitochondrial genomes of plants. OMICS 15: 783-789.
-
(2011)
OMICS
, vol.15
, pp. 783-789
-
-
Kuntal, H.1
Sharma, V.2
-
13
-
-
33745033519
-
Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes
-
Lawson, M. J., and L. Zhang, 2006 Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes. Genome Biol. 7: R14.
-
(2006)
Genome Biol
, vol.7
-
-
Lawson, M.J.1
Zhang, L.2
-
14
-
-
38849170546
-
Sequence-based estimation of minisatellite and microsatellite repeat variability
-
Legendre, M., N. Pochet, T. Pak, and K. J. Verstrepen, 2007 Sequence-based estimation of minisatellite and microsatellite repeat variability. Genome Res. 17: 1787-1796.
-
(2007)
Genome Res
, vol.17
, pp. 1787-1796
-
-
Legendre, M.1
Pochet, N.2
Pak, T.3
Verstrepen, K.J.4
-
15
-
-
15244344323
-
Analysis on frequency and density of microsatellites in coding sequences of several eukaryotic genomes
-
Li, B., Q. Xia, C. Lu, Z. Zhou, and Z. Xiang, 2004 Analysis on frequency and density of microsatellites in coding sequences of several eukaryotic genomes. Genomics Proteomics Bioinformatics 2: 24-31.
-
(2004)
Genomics Proteomics Bioinformatics
, vol.2
, pp. 24-31
-
-
Li, B.1
Xia, Q.2
Lu, C.3
Zhou, Z.4
Xiang, Z.5
-
16
-
-
0036897944
-
Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review
-
Li, Y.-C., A. B. Korol, T. Fahima, A. Beiles, and E. Nevo, 2002 Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol. Ecol. 11: 2453-2465.
-
(2002)
Mol. Ecol
, vol.11
, pp. 2453-2465
-
-
Li, Y.-C.1
Korol, A.B.2
Fahima, T.3
Beiles, A.4
Nevo, E.5
-
17
-
-
84859323535
-
Evolutionary pressures on simple sequence repeats in prokaryotic coding regions
-
Lin, W.-H., and E. Kussell, 2011 Evolutionary pressures on simple sequence repeats in prokaryotic coding regions. Nucleic Acids Res. 40: 2399-2413.
-
(2011)
Nucleic Acids Res
, vol.40
, pp. 2399-2413
-
-
Lin, W.-H.1
Kussell, E.2
-
18
-
-
14844345314
-
Microsatellite instability regulates transcription factor binding and gene expression
-
USA
-
Martin, P., K. Makepeace, S. A. Hill, D. W. Hood, and E. R. Moxon, 2005 Microsatellite instability regulates transcription factor binding and gene expression. Proc. Natl. Acad. Sci. USA 102: 3800-3804.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 3800-3804
-
-
Martin, P.1
Makepeace, K.2
Hill, S.A.3
Hood, D.W.4
Moxon, E.R.5
-
19
-
-
18344364099
-
Understanding alternative splicing: towards a cellular code
-
Matlin, A. J., F. Clark, and C. W. J. Smith, 2005 Understanding alternative splicing: towards a cellular code. Nat. Rev. Mol. Cell Biol. 6: 386-398.
-
(2005)
Nat. Rev. Mol. Cell Biol
, vol.6
, pp. 386-398
-
-
Matlin, A.J.1
Clark, F.2
Smith, C.W.J.3
-
20
-
-
77951586434
-
Genome-wide analysis of tandem repeats in Daphnia pulex-a comparative approach
-
Mayer, C., F. Leese, and R. Tollrian, 2010 Genome-wide analysis of tandem repeats in Daphnia pulex-a comparative approach. BMC Genomics 11: 277.
-
(2010)
BMC Genomics
, vol.11
, pp. 277
-
-
Mayer, C.1
Leese, F.2
Tollrian, R.3
-
21
-
-
84873032132
-
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution
-
Melters, D. P., K. R. Bradnam, H. A. Young, N. Telis, M. R. May et al., 2013 Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution. Genome Biol. 14: R10.
-
(2013)
Genome Biol
, vol.14
-
-
Melters, D.P.1
Bradnam, K.R.2
Young, H.A.3
Telis, N.4
May, M.R.5
-
22
-
-
0036125393
-
Domain-level differences in microsatellite distribution and content result from different relative rates of insertion and deletion mutations
-
Metzgar, D., L. Liu, C. Hansen, K. Dybvig, and C. Wills, 2002 Domain-level differences in microsatellite distribution and content result from different relative rates of insertion and deletion mutations. Genome Res. 12: 408-413.
-
(2002)
Genome Res
, vol.12
, pp. 408-413
-
-
Metzgar, D.1
Liu, L.2
Hansen, C.3
Dybvig, K.4
Wills, C.5
-
23
-
-
0036478903
-
Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
-
Morgante, M., M. Hanafey, and W. Powell, 2002 Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat. Genet. 30: 194-200.
-
(2002)
Nat. Genet
, vol.30
, pp. 194-200
-
-
Morgante, M.1
Powell, W.2
-
24
-
-
77950236892
-
Homopolymeric tracts represent a general regulatory mechanism in prokaryotes
-
Orsi, R. H., B. M. Bowen, and M. Wiedmann, 2010 Homopolymeric tracts represent a general regulatory mechanism in prokaryotes. BMC Genomics 11: 102.
-
(2010)
BMC Genomics
, vol.11
, pp. 102
-
-
Orsi, R.H.1
Bowen, B.M.2
Wiedmann, M.3
-
25
-
-
0343776188
-
The eukaryotic promoter database (EPD)
-
Périer, R. C., V. Praz, T. Junier, C. Bonnard, and P. Bucher, 2000 The eukaryotic promoter database (EPD). Nucleic Acids Res. 28: 302-303.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 302-303
-
-
Périer, R.C.1
Praz, V.2
Junier, T.3
Bonnard, C.4
Bucher, P.5
-
26
-
-
0036855185
-
Abundant raw material for cisregulatory evolution in humans
-
Rockman, M. V., and G. A. Wray, 2002 Abundant raw material for cisregulatory evolution in humans. Mol. Biol. Evol. 19: 1991-2004.
-
(2002)
Mol. Biol. Evol
, vol.19
, pp. 1991-2004
-
-
Rockman, M.V.1
Wray, G.A.2
-
27
-
-
84892711293
-
Mining functional microsatellites in legume unigenes
-
Roorkiwal, M., and P. C. Sharma, 2011 Mining functional microsatellites in legume unigenes. Bioinformation 7: 264-270.
-
(2011)
Bioinformation
, vol.7
, pp. 264-270
-
-
Roorkiwal, M.1
Sharma, P.C.2
-
28
-
-
42449107363
-
annot8r: GO, EC and KEGG annotation of EST datasets
-
Schmid, R., and M. L. Blaxter, 2008 annot8r: GO, EC and KEGG annotation of EST datasets. BMC Bioinformatics 9: 180.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 180
-
-
Schmid, R.1
Blaxter, M.L.2
-
29
-
-
35648929376
-
Mining microsatellites in eukaryotic genomes
-
Sharma, P. C., A. Grover, and G. Kahl, 2007 Mining microsatellites in eukaryotic genomes. Trends Biotechnol. 25: 490-498.
-
(2007)
Trends Biotechnol
, vol.25
, pp. 490-498
-
-
Sharma, P.C.1
Grover, A.2
Kahl, G.3
-
30
-
-
0025800526
-
Androgen receptor gene mutations in X-linked spinal and bulbar muscular atrophy
-
La Spada, A. R., E. M. Wilson, D. B. Lubahn, A. E. Harding, and K. H. Fischbeck, 1991 Androgen receptor gene mutations in X-linked spinal and bulbar muscular atrophy. Nature 352: 77-79.
-
(1991)
Nature
, vol.352
, pp. 77-79
-
-
La Spada, A.R.1
Wilson, E.M.2
Lubahn, D.B.3
Harding, A.E.4
Fischbeck, K.H.5
-
31
-
-
0036366727
-
Microsatellite variation associated with prolactin expression and growth of salt-challenged tilapia
-
Streelman, J. T., and T. D. Kocher, 2002 Microsatellite variation associated with prolactin expression and growth of salt-challenged tilapia. Physiol. Genomics 9: 1-4.
-
(2002)
Physiol. Genomics
, vol.9
, pp. 1-4
-
-
Streelman, J.T.1
Kocher, T.D.2
-
32
-
-
0037268258
-
Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions
-
Subramanian, S., R. K. Mishra, and L. Singh, 2003 Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions. Genome Biol. 4: R13.
-
(2003)
Genome Biol
, vol.4
-
-
Subramanian, S.1
Mishra, R.K.2
Singh, L.3
-
33
-
-
60749097197
-
A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana
-
Sureshkumar, S., M. Todesco, K. Schneeberger, R. Harilal, S. Balasubramanian et al., 2009 A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana. Science 323: 1060-1063.
-
(2009)
Science
, vol.323
, pp. 1060-1063
-
-
Sureshkumar, S.1
Todesco, M.2
Schneeberger, K.3
Harilal, R.4
Balasubramanian, S.5
-
34
-
-
0021770546
-
Simple sequences are ubiquitous repetitive components of eukaryotic genomes
-
Tautz, D., and M. Renz, 1984 Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res. 12: 4127-4138.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 4127-4138
-
-
Tautz, D.1
Renz, M.2
-
35
-
-
0033858199
-
Microsatellites in different eukaryotic genomes: survey and analysis
-
Tóth, G., Z. Gáspári, and J. Jurka, 2000 Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res. 10: 967-981.
-
(2000)
Genome Res
, vol.10
, pp. 967-981
-
-
Tóth, G.1
Gáspári, Z.2
Jurka, J.3
-
36
-
-
0025905795
-
Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome
-
Verkerk, A. J., M. Pieretti, J. S. Sutcliffe, Y. H. Fu, D. P. Kuhl et al., 1991 Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome. Cell 65: 905-914.
-
(1991)
Cell
, vol.65
, pp. 905-914
-
-
Verkerk, A.J.1
Pieretti, M.2
Sutcliffe, J.S.3
Fu, Y.H.4
Kuhl, D.P.5
-
37
-
-
25144494777
-
Intragenic tandem repeats generate functional variability
-
Verstrepen, K. J., A. Jansen, F. Lewitter, and G. R. Fink, 2005 Intragenic tandem repeats generate functional variability. Nat. Genet. 37: 986-990.
-
(2005)
Nat. Genet
, vol.37
, pp. 986-990
-
-
Verstrepen, K.J.1
Jansen, A.2
Lewitter, F.3
Fink, G.R.4
-
39
-
-
66349113764
-
Unstable tandem repeats in promoters confer transcriptional evolvability
-
Vinces, M. D., M. Legendre, M. Caldara, M. Hagihara, and K. J. Verstrepen, 2009 Unstable tandem repeats in promoters confer transcriptional evolvability. Science 324: 1213-1216.
-
(2009)
Science
, vol.324
, pp. 1213-1216
-
-
Vinces, M.D.1
Legendre, M.2
Caldara, M.3
Hagihara, M.4
Verstrepen, K.J.5
-
40
-
-
33746718089
-
Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites
-
von Stackelberg, M., S. A. Rensing, and R. Reski, 2006 Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites. BMC Plant Biol. 6: 9.
-
(2006)
BMC Plant Biol
, vol.6
, pp. 9
-
-
von Stackelberg, M.1
Rensing, S.A.2
Reski, R.3
-
41
-
-
33846225133
-
Huntington's disease
-
Walker, F. O., 2007 Huntington's disease. Lancet 369: 218-228.
-
(2007)
Lancet
, vol.369
, pp. 218-228
-
-
Walker, F.O.1
-
42
-
-
0004160359
-
Practical data analysis for designed experiments
-
Chapman & Hall, London, New York
-
Yandell, B. S., 1997 Practical data analysis for designed experiments, Chapman & Hall, London, New York.
-
(1997)
-
-
Yandell, B.S.1
-
43
-
-
2442687890
-
Preference of simple sequence repeats in coding and non-coding regions of Arabidopsis thaliana
-
Zhang, L., D. Yuan, S. Yu, Z. Li, Y. Cao et al., 2004 Preference of simple sequence repeats in coding and non-coding regions of Arabidopsis thaliana. Bioinformatics 20: 1081-1086.
-
(2004)
Bioinformatics
, vol.20
, pp. 1081-1086
-
-
Zhang, L.1
Yuan, D.2
Yu, S.3
Li, Z.4
Cao, Y.5
-
44
-
-
33846805782
-
Conservation of noncoding microsatellites in plants: implication for gene regulation
-
Zhang, L., K. Zuo, F. Zhang, Y. Cao, J. Wang et al., 2006 Conservation of noncoding microsatellites in plants: implication for gene regulation. BMC Genomics 7: 323.
-
(2006)
BMC Genomics
, vol.7
, pp. 323
-
-
Zhang, L.1
Zuo, K.2
Zhang, F.3
Cao, Y.4
Wang, J.5
-
45
-
-
84865485469
-
Coevolution between simple sequence repeats (SSRs) and virus genome size
-
Zhao, X., Y. Tian, R. Yang, H. Feng, Q. Ouyang et al., 2012 Coevolution between simple sequence repeats (SSRs) and virus genome size. BMC Genomics 13: 435.
-
(2012)
BMC Genomics
, vol.13
, pp. 435
-
-
Zhao, X.1
Tian, Y.2
Yang, R.3
Feng, H.4
Ouyang, Q.5
-
46
-
-
48449104617
-
GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis
-
Zheng, Q., and X.-J. Wang, 2008 GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res. 36: W358-W363.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Zheng, Q.1
Wang, X.-J.2
-
47
-
-
84155191038
-
Comprehensive analysis of tandem amino acid repeats from ten angiosperm genomes
-
Zhou, Y., J. Liu, L. Han, Z.-G. Li, and Z. Zhang, 2011 Comprehensive analysis of tandem amino acid repeats from ten angiosperm genomes. BMC Genomics 12: 632.
-
(2011)
BMC Genomics
, vol.12
, pp. 632
-
-
Zhou, Y.1
Liu, J.2
Han, L.3
Li, Z.-G.4
Zhang, Z.5
|