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Volumn 12, Issue , 2011, Pages

Comprehensive analysis of tandem amino acid repeats from ten angiosperm genomes

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; VEGETABLE PROTEIN;

EID: 84155191038     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-632     Document Type: Article
Times cited : (10)

References (72)
  • 1
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: survey and analysis
    • 10.1101/gr.10.7.967, 310925, 10899146
    • Toth G, Gaspari Z, Jurka J. Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res 2000, 10(7):967-981. 10.1101/gr.10.7.967, 310925, 10899146.
    • (2000) Genome Res , vol.10 , Issue.7 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 2
    • 0028325481 scopus 로고
    • Codon reiteration and the evolution of proteins
    • 10.1073/pnas.91.10.4298, 43772, 8183904
    • Green H, Wang N. Codon reiteration and the evolution of proteins. Proc Natl Acad Sci USA 1994, 91(10):4298-4302. 10.1073/pnas.91.10.4298, 43772, 8183904.
    • (1994) Proc Natl Acad Sci USA , vol.91 , Issue.10 , pp. 4298-4302
    • Green, H.1    Wang, N.2
  • 3
    • 0033027083 scopus 로고    scopus 로고
    • Simple sequence is abundant in eukaryotic proteins
    • 10.1110/ps.8.6.1358, 2144344, 10386886
    • Golding GB. Simple sequence is abundant in eukaryotic proteins. Protein Sci 1999, 8(6):1358-1361. 10.1110/ps.8.6.1358, 2144344, 10386886.
    • (1999) Protein Sci , vol.8 , Issue.6 , pp. 1358-1361
    • Golding, G.B.1
  • 4
    • 0037039436 scopus 로고    scopus 로고
    • Amino acid runs in eukaryotic proteomes and disease associations
    • 10.1073/pnas.012608599, 117561, 11782551
    • Karlin S, Brocchieri L, Bergman A, Mrazek J, Gentles AJ. Amino acid runs in eukaryotic proteomes and disease associations. Proc Natl Acad Sci USA 2002, 99(1):333-338. 10.1073/pnas.012608599, 117561, 11782551.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.1 , pp. 333-338
    • Karlin, S.1    Brocchieri, L.2    Bergman, A.3    Mrazek, J.4    Gentles, A.J.5
  • 5
    • 0035020731 scopus 로고    scopus 로고
    • The comparative genomics of polyglutamine repeats: extreme differences in the codon organization of repeat-encoding regions between mammals and Drosophila
    • Alba MM, Santibanez-Koref MF, Hancock JM. The comparative genomics of polyglutamine repeats: extreme differences in the codon organization of repeat-encoding regions between mammals and Drosophila. J Mol Evol 2001, 52(3):249-259.
    • (2001) J Mol Evol , vol.52 , Issue.3 , pp. 249-259
    • Alba, M.M.1    Santibanez-Koref, M.F.2    Hancock, J.M.3
  • 6
    • 0032168989 scopus 로고    scopus 로고
    • Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations
    • 10.1073/pnas.95.18.10774, 27971, 9724780
    • Kruglyak S, Durrett RT, Schug MD, Aquadro CF. Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations. Proc Natl Acad Sci USA 1998, 95(18):10774-10778. 10.1073/pnas.95.18.10774, 27971, 9724780.
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.18 , pp. 10774-10778
    • Kruglyak, S.1    Durrett, R.T.2    Schug, M.D.3    Aquadro, C.F.4
  • 7
    • 0034252264 scopus 로고    scopus 로고
    • Mini- and microsatellite expansions: the recombination connection
    • 10.1093/embo-reports/kvd031, 1084263, 11265750
    • Richard GF, Paques F. Mini- and microsatellite expansions: the recombination connection. EMBO Rep 2000, 1(2):122-126. 10.1093/embo-reports/kvd031, 1084263, 11265750.
    • (2000) EMBO Rep , vol.1 , Issue.2 , pp. 122-126
    • Richard, G.F.1    Paques, F.2
  • 8
    • 67650868984 scopus 로고    scopus 로고
    • Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins
    • 10.1186/gb-2009-10-6-r59, 2718493, 19486509
    • Simon M, Hancock JM. Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins. Genome Biol 2009, 10(6):R59. 10.1186/gb-2009-10-6-r59, 2718493, 19486509.
    • (2009) Genome Biol , vol.10 , Issue.6
    • Simon, M.1    Hancock, J.M.2
  • 9
    • 78149432728 scopus 로고    scopus 로고
    • Variable tandem repeats accelerate evolution of coding and regulatory sequences
    • 10.1146/annurev-genet-072610-155046, 20809801
    • Gemayel R, Vinces MD, Legendre M, Verstrepen KJ. Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu Rev Genet 2010, 44:445-477. 10.1146/annurev-genet-072610-155046, 20809801.
    • (2010) Annu Rev Genet , vol.44 , pp. 445-477
    • Gemayel, R.1    Vinces, M.D.2    Legendre, M.3    Verstrepen, K.J.4
  • 10
    • 0242458322 scopus 로고    scopus 로고
    • Are non-functional, unfolded proteins ('junk proteins') common in the genome?
    • 10.1016/S0014-5793(03)01223-7, 14623072
    • Lovell SC. Are non-functional, unfolded proteins ('junk proteins') common in the genome?. FEBS Lett 2003, 554(3):237-239. 10.1016/S0014-5793(03)01223-7, 14623072.
    • (2003) FEBS Lett , vol.554 , Issue.3 , pp. 237-239
    • Lovell, S.C.1
  • 11
    • 34547692622 scopus 로고    scopus 로고
    • Trinucleotide repeat disorders
    • 10.1146/annurev.neuro.29.051605.113042, 17417937
    • Orr HT, Zoghbi HY. Trinucleotide repeat disorders. Annu Rev Neurosci 2007, 30:575-621. 10.1146/annurev.neuro.29.051605.113042, 17417937.
    • (2007) Annu Rev Neurosci , vol.30 , pp. 575-621
    • Orr, H.T.1    Zoghbi, H.Y.2
  • 12
    • 39849099440 scopus 로고    scopus 로고
    • Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock
    • 10.1371/journal.pone.0000795, 1949147, 17726525
    • Michael TP, Park S, Kim TS, Booth J, Byer A, Sun Q, Chory J, Lee K. Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock. PLoS One 2007, 2(8):e795. 10.1371/journal.pone.0000795, 1949147, 17726525.
    • (2007) PLoS One , vol.2 , Issue.8
    • Michael, T.P.1    Park, S.2    Kim, T.S.3    Booth, J.4    Byer, A.5    Sun, Q.6    Chory, J.7    Lee, K.8
  • 13
    • 74549212521 scopus 로고    scopus 로고
    • The expansion of amino-acid repeats is not associated to adaptive evolution in mammalian genes
    • 10.1186/1471-2164-10-619, 2806350, 20021652
    • Cruz F, Roux J, Robinson-Rechavi M. The expansion of amino-acid repeats is not associated to adaptive evolution in mammalian genes. BMC Genomics 2009, 10:619. 10.1186/1471-2164-10-619, 2806350, 20021652.
    • (2009) BMC Genomics , vol.10 , pp. 619
    • Cruz, F.1    Roux, J.2    Robinson-Rechavi, M.3
  • 14
    • 33845422549 scopus 로고    scopus 로고
    • Distributional gradient of amino acid repeats in plant proteins
    • 10.1139/G06-054, 17036065
    • Zhang L, Yu S, Cao Y, Wang J, Zuo K, Qin J, Tang K. Distributional gradient of amino acid repeats in plant proteins. Genome 2006, 49(8):900-905. 10.1139/G06-054, 17036065.
    • (2006) Genome , vol.49 , Issue.8 , pp. 900-905
    • Zhang, L.1    Yu, S.2    Cao, Y.3    Wang, J.4    Zuo, K.5    Qin, J.6    Tang, K.7
  • 15
    • 13444292317 scopus 로고    scopus 로고
    • Simple sequence repeats in proteins and their significance for network evolution
    • 10.1016/j.gene.2004.11.023, 15716087
    • Hancock JM, Simon M. Simple sequence repeats in proteins and their significance for network evolution. Gene 2005, 345(1):113-118. 10.1016/j.gene.2004.11.023, 15716087.
    • (2005) Gene , vol.345 , Issue.1 , pp. 113-118
    • Hancock, J.M.1    Simon, M.2
  • 16
    • 1842717952 scopus 로고    scopus 로고
    • Comparative analysis of amino acid repeats in rodents and humans
    • 10.1101/gr.1925704, 383298, 15059995
    • Alba MM, Guigo R. Comparative analysis of amino acid repeats in rodents and humans. Genome Res 2004, 14(4):549-554. 10.1101/gr.1925704, 383298, 15059995.
    • (2004) Genome Res , vol.14 , Issue.4 , pp. 549-554
    • Alba, M.M.1    Guigo, R.2
  • 17
    • 34347379533 scopus 로고    scopus 로고
    • RCPdb: An evolutionary classification and codon usage database for repeat-containing proteins
    • 10.1101/gr.6255407, 1899123, 17567984
    • Faux NG, Huttley GA, Mahmood K, Webb GI, de la Banda MG, Whisstock JC. RCPdb: An evolutionary classification and codon usage database for repeat-containing proteins. Genome Res 2007, 17(7):1118-1127. 10.1101/gr.6255407, 1899123, 17567984.
    • (2007) Genome Res , vol.17 , Issue.7 , pp. 1118-1127
    • Faux, N.G.1    Huttley, G.A.2    Mahmood, K.3    Webb, G.I.4    de la Banda, M.G.5    Whisstock, J.C.6
  • 18
    • 33746295014 scopus 로고    scopus 로고
    • On the abundance, amino acid composition, and evolutionary dynamics of low-complexity regions in proteins
    • DePristo MA, Zilversmit MM, Hartl DL. On the abundance, amino acid composition, and evolutionary dynamics of low-complexity regions in proteins. Gene 2006, 378:19-30.
    • (2006) Gene , vol.378 , pp. 19-30
    • DePristo, M.A.1    Zilversmit, M.M.2    Hartl, D.L.3
  • 19
    • 77952977231 scopus 로고    scopus 로고
    • Natural selection drives the accumulation of amino acid tandem repeats in human proteins
    • 10.1101/gr.101261.109, 2877571, 20335526
    • Mularoni L, Ledda A, Toll-Riera M, Alba MM. Natural selection drives the accumulation of amino acid tandem repeats in human proteins. Genome Res 2010, 20(6):745-754. 10.1101/gr.101261.109, 2877571, 20335526.
    • (2010) Genome Res , vol.20 , Issue.6 , pp. 745-754
    • Mularoni, L.1    Ledda, A.2    Toll-Riera, M.3    Alba, M.M.4
  • 20
    • 55449105229 scopus 로고    scopus 로고
    • Positive selection of a pre-expansion CAG repeat of the human SCA2 gene
    • 10.1371/journal.pgen.0010041, 1239938, 16205789
    • Yu F, Sabeti PC, Hardenbol P, Fu Q, Fry B, Lu X, Ghose S, Vega R, Perez A, Pasternak S, et al. Positive selection of a pre-expansion CAG repeat of the human SCA2 gene. PLoS Genet 2005, 1(3):e41. 10.1371/journal.pgen.0010041, 1239938, 16205789.
    • (2005) PLoS Genet , vol.1 , Issue.3
    • Yu, F.1    Sabeti, P.C.2    Hardenbol, P.3    Fu, Q.4    Fry, B.5    Lu, X.6    Ghose, S.7    Vega, R.8    Perez, A.9    Pasternak, S.10
  • 21
    • 20644472668 scopus 로고    scopus 로고
    • Microsatellite instability generates diversity in brain and sociobehavioral traits
    • 10.1126/science.1111427, 15947188
    • Hammock EA, Young LJ. Microsatellite instability generates diversity in brain and sociobehavioral traits. Science 2005, 308(5728):1630-1634. 10.1126/science.1111427, 15947188.
    • (2005) Science , vol.308 , Issue.5728 , pp. 1630-1634
    • Hammock, E.A.1    Young, L.J.2
  • 22
    • 37549010337 scopus 로고    scopus 로고
    • Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species
    • 10.1093/molbev/msm129, 17602168
    • Huntley MA, Clark AG. Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species. Mol Biol Evol 2007, 24(12):2598-2609. 10.1093/molbev/msm129, 17602168.
    • (2007) Mol Biol Evol , vol.24 , Issue.12 , pp. 2598-2609
    • Huntley, M.A.1    Clark, A.G.2
  • 23
    • 4644373266 scopus 로고    scopus 로고
    • A genomic basis for the evolution of vertebrate transcription factors containing amino Acid runs
    • 10.1534/genetics.104.029082, 1470981, 15342519
    • Caburet S, Vaiman D, Veitia RA. A genomic basis for the evolution of vertebrate transcription factors containing amino Acid runs. Genetics 2004, 167(4):1813-1820. 10.1534/genetics.104.029082, 1470981, 15342519.
    • (2004) Genetics , vol.167 , Issue.4 , pp. 1813-1820
    • Caburet, S.1    Vaiman, D.2    Veitia, R.A.3
  • 24
    • 73449116042 scopus 로고    scopus 로고
    • Tandem repeat distribution of gene transcripts in three plant families
    • doi.org/10.1590/S1415-47572009005000091 , 3036893, 21637460
    • Maia LC, Souza VQ, Kopp MM, Carvalho FIF, Oliveira AC. Tandem repeat distribution of gene transcripts in three plant families. Genet Mol Biol 2009, 32(4):1-12. doi.org/10.1590/S1415-47572009005000091 , 3036893, 21637460.
    • (2009) Genet Mol Biol , vol.32 , Issue.4 , pp. 1-12
    • Maia, L.C.1    Souza, V.Q.2    Kopp, M.M.3    Carvalho, F.I.F.4    Oliveira, A.C.5
  • 26
    • 42949157236 scopus 로고    scopus 로고
    • The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
    • 10.1038/nature06856, 2836516, 18432245
    • Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 2008, 452(7190):991-996. 10.1038/nature06856, 2836516, 18432245.
    • (2008) Nature , vol.452 , Issue.7190 , pp. 991-996
    • Ming, R.1    Hou, S.2    Feng, Y.3    Yu, Q.4    Dionne-Laporte, A.5    Saw, J.H.6    Senin, P.7    Wang, W.8    Ly, B.V.9    Lewis, K.L.10
  • 30
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • 10.1038/nature06148, 17721507
    • Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449(7161):463-467. 10.1038/nature06148, 17721507.
    • (2007) Nature , vol.449 , Issue.7161 , pp. 463-467
    • Jaillon, O.1    Aury, J.M.2    Noel, B.3    Policriti, A.4    Clepet, C.5    Casagrande, A.6    Choisne, N.7    Aubourg, S.8    Vitulo, N.9    Jubin, C.10
  • 37
  • 38
    • 0030953366 scopus 로고    scopus 로고
    • Nucleotide compositional constraints on genomes generate alanine-, glycine-, and proline-rich structures in transcription factors
    • Nakachi Y, Hayakawa T, Oota H, Sumiyama K, Wang L, Ueda S. Nucleotide compositional constraints on genomes generate alanine-, glycine-, and proline-rich structures in transcription factors. Mol Biol Evol 1997, 14(10):1042-1049.
    • (1997) Mol Biol Evol , vol.14 , Issue.10 , pp. 1042-1049
    • Nakachi, Y.1    Hayakawa, T.2    Oota, H.3    Sumiyama, K.4    Wang, L.5    Ueda, S.6
  • 39
    • 2442651458 scopus 로고    scopus 로고
    • Recombination drives the evolution of GC-content in the human genome
    • 10.1093/molbev/msh070, 14963104
    • Meunier J, Duret L. Recombination drives the evolution of GC-content in the human genome. Mol Biol Evol 2004, 21(6):984-990. 10.1093/molbev/msh070, 14963104.
    • (2004) Mol Biol Evol , vol.21 , Issue.6 , pp. 984-990
    • Meunier, J.1    Duret, L.2
  • 40
    • 33845768012 scopus 로고    scopus 로고
    • Recombination: an underappreciated factor in the evolution of plant genomes
    • 10.1038/nrg1970, 17173059
    • Gaut BS, Wright SI, Rizzon C, Dvorak J, Anderson LK. Recombination: an underappreciated factor in the evolution of plant genomes. Nat Rev Genet 2007, 8(1):77-84. 10.1038/nrg1970, 17173059.
    • (2007) Nat Rev Genet , vol.8 , Issue.1 , pp. 77-84
    • Gaut, B.S.1    Wright, S.I.2    Rizzon, C.3    Dvorak, J.4    Anderson, L.K.5
  • 42
    • 77955943298 scopus 로고    scopus 로고
    • Low-complexity regions in Plasmodium falciparum: missing links in the evolution of an extreme genome
    • 10.1093/molbev/msq108, 2922621, 20427419
    • Zilversmit MM, Volkman SK, DePristo MA, Wirth DF, Awadalla P, Hartl DL. Low-complexity regions in Plasmodium falciparum: missing links in the evolution of an extreme genome. Mol Biol Evol 2010, 27(9):2198-2209. 10.1093/molbev/msq108, 2922621, 20427419.
    • (2010) Mol Biol Evol , vol.27 , Issue.9 , pp. 2198-2209
    • Zilversmit, M.M.1    Volkman, S.K.2    DePristo, M.A.3    Wirth, D.F.4    Awadalla, P.5    Hartl, D.L.6
  • 43
    • 0034984834 scopus 로고    scopus 로고
    • A role for selection in regulating the evolutionary emergence of disease-causing and other coding CAG repeats in humans and mice
    • 10.1093/oxfordjournals.molbev.a003873, 11371590
    • Hancock JM, Worthey EA, Santibanez-Koref MF. A role for selection in regulating the evolutionary emergence of disease-causing and other coding CAG repeats in humans and mice. Mol Biol Evol 2001, 18(6):1014-1023. 10.1093/oxfordjournals.molbev.a003873, 11371590.
    • (2001) Mol Biol Evol , vol.18 , Issue.6 , pp. 1014-1023
    • Hancock, J.M.1    Worthey, E.A.2    Santibanez-Koref, M.F.3
  • 44
    • 67650553388 scopus 로고    scopus 로고
    • A comparative proteomic analysis of the simple amino acid repeat distributions in Plasmodia reveals lineage specific amino acid selection
    • 10.1371/journal.pone.0006231, 2705789, 19597555
    • Dalby AR. A comparative proteomic analysis of the simple amino acid repeat distributions in Plasmodia reveals lineage specific amino acid selection. PLoS One 2009, 4(7):e6231. 10.1371/journal.pone.0006231, 2705789, 19597555.
    • (2009) PLoS One , vol.4 , Issue.7
    • Dalby, A.R.1
  • 45
    • 2442572055 scopus 로고    scopus 로고
    • Seed-specific transcription factors ABI3 and FUS3: molecular interaction with DNA
    • 10.1007/s00425-004-1206-9, 14767767
    • Monke G, Altschmied L, Tewes A, Reidt W, Mock HP, Baumlein H, Conrad U. Seed-specific transcription factors ABI3 and FUS3: molecular interaction with DNA. Planta 2004, 219(1):158-166. 10.1007/s00425-004-1206-9, 14767767.
    • (2004) Planta , vol.219 , Issue.1 , pp. 158-166
    • Monke, G.1    Altschmied, L.2    Tewes, A.3    Reidt, W.4    Mock, H.P.5    Baumlein, H.6    Conrad, U.7
  • 46
    • 0036333380 scopus 로고    scopus 로고
    • SEUSS, a member of a novel family of plant regulatory proteins, represses floral homeotic gene expression with LEUNIG
    • Franks RG, Wang C, Levin JZ, Liu Z. SEUSS, a member of a novel family of plant regulatory proteins, represses floral homeotic gene expression with LEUNIG. Development 2002, 129(1):253-263.
    • (2002) Development , vol.129 , Issue.1 , pp. 253-263
    • Franks, R.G.1    Wang, C.2    Levin, J.Z.3    Liu, Z.4
  • 47
    • 0033731176 scopus 로고    scopus 로고
    • LEUNIG, a putative transcriptional corepressor that regulates AGAMOUS expression during flower development
    • 10.1073/pnas.230352397, 18862, 11058164
    • Conner J, Liu Z. LEUNIG, a putative transcriptional corepressor that regulates AGAMOUS expression during flower development. Proc Natl Acad Sci USA 2000, 97(23):12902-12907. 10.1073/pnas.230352397, 18862, 11058164.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.23 , pp. 12902-12907
    • Conner, J.1    Liu, Z.2
  • 48
    • 9444255105 scopus 로고    scopus 로고
    • Formin homology 2 domains occur in multiple contexts in angiosperms
    • 10.1186/1471-2164-5-44, 509240, 15256004
    • Cvrckova F, Novotny M, Pickova D, Zarsky V. Formin homology 2 domains occur in multiple contexts in angiosperms. BMC Genomics 2004, 5(1):44. 10.1186/1471-2164-5-44, 509240, 15256004.
    • (2004) BMC Genomics , vol.5 , Issue.1 , pp. 44
    • Cvrckova, F.1    Novotny, M.2    Pickova, D.3    Zarsky, V.4
  • 49
    • 0038141335 scopus 로고    scopus 로고
    • Regulation of flowering time by light quality
    • 10.1038/nature01636, 12815435
    • Cerdan PD, Chory J. Regulation of flowering time by light quality. Nature 2003, 423(6942):881-885. 10.1038/nature01636, 12815435.
    • (2003) Nature , vol.423 , Issue.6942 , pp. 881-885
    • Cerdan, P.D.1    Chory, J.2
  • 50
    • 0042819915 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins evolve by repeat expansion
    • 10.1002/bies.10324, 12938174
    • Tompa P. Intrinsically unstructured proteins evolve by repeat expansion. Bioessays 2003, 25(9):847-855. 10.1002/bies.10324, 12938174.
    • (2003) Bioessays , vol.25 , Issue.9 , pp. 847-855
    • Tompa, P.1
  • 52
    • 33745289067 scopus 로고    scopus 로고
    • Length-dependent prediction of protein intrinsic disorder
    • 10.1186/1471-2105-7-208, 1479845, 16618368
    • Peng K, Radivojac P, Vucetic S, Dunker AK, Obradovic Z. Length-dependent prediction of protein intrinsic disorder. BMC Bioinformatics 2006, 7:208. 10.1186/1471-2105-7-208, 1479845, 16618368.
    • (2006) BMC Bioinformatics , vol.7 , pp. 208
    • Peng, K.1    Radivojac, P.2    Vucetic, S.3    Dunker, A.K.4    Obradovic, Z.5
  • 53
    • 24044538903 scopus 로고    scopus 로고
    • IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
    • 10.1093/bioinformatics/bti541, 15955779
    • Dosztanyi Z, Csizmok V, Tompa P, Simon I. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 2005, 21(16):3433-3434. 10.1093/bioinformatics/bti541, 15955779.
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3433-3434
    • Dosztanyi, Z.1    Csizmok, V.2    Tompa, P.3    Simon, I.4
  • 54
    • 34548567232 scopus 로고    scopus 로고
    • POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions
    • 10.1093/bioinformatics/btm302, 17545177
    • Hirose S, Shimizu K, Kanai S, Kuroda Y, Noguchi T. POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions. Bioinformatics 2007, 23(16):2046-2053. 10.1093/bioinformatics/btm302, 17545177.
    • (2007) Bioinformatics , vol.23 , Issue.16 , pp. 2046-2053
    • Hirose, S.1    Shimizu, K.2    Kanai, S.3    Kuroda, Y.4    Noguchi, T.5
  • 55
    • 67649635978 scopus 로고    scopus 로고
    • Intrinsic protein disorder and interaction promiscuity are widely associated with dosage sensitivity
    • 10.1016/j.cell.2009.04.029, 19596244
    • Vavouri T, Semple JI, Garcia-Verdugo R, Lehner B. Intrinsic protein disorder and interaction promiscuity are widely associated with dosage sensitivity. Cell 2009, 138(1):198-208. 10.1016/j.cell.2009.04.029, 19596244.
    • (2009) Cell , vol.138 , Issue.1 , pp. 198-208
    • Vavouri, T.1    Semple, J.I.2    Garcia-Verdugo, R.3    Lehner, B.4
  • 56
    • 66749163093 scopus 로고    scopus 로고
    • Insights into the regulation of intrinsically disordered proteins in the human proteome by analyzing sequence and gene expression data
    • 10.1186/gb-2009-10-5-r50, 2718516, 19432952
    • Edwards YJ, Lobley AE, Pentony MM, Jones DT. Insights into the regulation of intrinsically disordered proteins in the human proteome by analyzing sequence and gene expression data. Genome Biol 2009, 10(5):R50. 10.1186/gb-2009-10-5-r50, 2718516, 19432952.
    • (2009) Genome Biol , vol.10 , Issue.5
    • Edwards, Y.J.1    Lobley, A.E.2    Pentony, M.M.3    Jones, D.T.4
  • 57
    • 77952988983 scopus 로고    scopus 로고
    • Genome-wide evidence for selection acting on single amino acid repeats
    • 10.1101/gr.101246.109, 2877572, 20056893
    • Haerty W, Golding GB. Genome-wide evidence for selection acting on single amino acid repeats. Genome Res 2010, 20(6):755-760. 10.1101/gr.101246.109, 2877572, 20056893.
    • (2010) Genome Res , vol.20 , Issue.6 , pp. 755-760
    • Haerty, W.1    Golding, G.B.2
  • 58
    • 84857195371 scopus 로고    scopus 로고
    • TAIR
    • TAIR. , http://www.arabidopsis.org
  • 59
    • 84857192245 scopus 로고    scopus 로고
    • Phytozome
    • Phytozome. , http://www.phytozome.net
  • 61
    • 79951480123 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • Team R Development Core
    • Team R Development Core R: A language and environment for statistical computing. Team R Development Core., http://www.r-project.org
  • 62
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: analysis and visualization of LD and haplotype maps
    • 10.1093/bioinformatics/bth457, 15297300
    • Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 2005, 21(2):263-265. 10.1093/bioinformatics/bth457, 15297300.
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 63
    • 0347361674 scopus 로고    scopus 로고
    • Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
    • 1462870, 14704198
    • Li N, Stephens M. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 2003, 165(4):2213-2233. 1462870, 14704198.
    • (2003) Genetics , vol.165 , Issue.4 , pp. 2213-2233
    • Li, N.1    Stephens, M.2
  • 64
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • 10.1093/bib/bbn013, 18372315
    • Katoh K, Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 2008, 9(4):286-298. 10.1093/bib/bbn013, 18372315.
    • (2008) Brief Bioinform , vol.9 , Issue.4 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 65
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • 10.1093/molbev/msm088, 17483113
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24(8):1586-1591. 10.1093/molbev/msm088, 17483113.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.1
  • 67
    • 33747884345 scopus 로고    scopus 로고
    • Gene expression omnibus: microarray data storage, submission, retrieval, and analysis
    • 1619900, 16939800
    • Barrett T, Edgar R. Gene expression omnibus: microarray data storage, submission, retrieval, and analysis. Methods Enzymol 2006, 411:352-369. 1619900, 16939800.
    • (2006) Methods Enzymol , vol.411 , pp. 352-369
    • Barrett, T.1    Edgar, R.2
  • 69
    • 53749099905 scopus 로고    scopus 로고
    • Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy
    • 10.1371/journal.pone.0003337, 2556097, 18836531
    • Jung KH, Dardick C, Bartley LE, Cao P, Phetsom J, Canlas P, Seo YS, Shultz M, Ouyang S, Yuan Q, et al. Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One 2008, 3(10):e3337. 10.1371/journal.pone.0003337, 2556097, 18836531.
    • (2008) PLoS One , vol.3 , Issue.10
    • Jung, K.H.1    Dardick, C.2    Bartley, L.E.3    Cao, P.4    Phetsom, J.5    Canlas, P.6    Seo, Y.S.7    Shultz, M.8    Ouyang, S.9    Yuan, Q.10
  • 70
    • 34447263110 scopus 로고    scopus 로고
    • Selection for the miniaturization of highly expressed genes
    • 10.1016/j.bbrc.2007.06.085, 17610841
    • Li SW, Feng L, Niu DK. Selection for the miniaturization of highly expressed genes. Biochem Biophys Res Commun 2007, 360(3):586-592. 10.1016/j.bbrc.2007.06.085, 17610841.
    • (2007) Biochem Biophys Res Commun , vol.360 , Issue.3 , pp. 586-592
    • Li, S.W.1    Feng, L.2    Niu, D.K.3
  • 71
    • 20144376345 scopus 로고    scopus 로고
    • Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
    • 10.1093/bioinformatics/bti042, 15388519
    • Yanai I, Benjamin H, Shmoish M, Chalifa-Caspi V, Shklar M, Ophir R, Bar-Even A, Horn-Saban S, Safran M, Domany E, et al. Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 2005, 21(5):650-659. 10.1093/bioinformatics/bti042, 15388519.
    • (2005) Bioinformatics , vol.21 , Issue.5 , pp. 650-659
    • Yanai, I.1    Benjamin, H.2    Shmoish, M.3    Chalifa-Caspi, V.4    Shklar, M.5    Ophir, R.6    Bar-Even, A.7    Horn-Saban, S.8    Safran, M.9    Domany, E.10
  • 72
    • 37849034683 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana
    • 10.1105/tpc.107.055046, 2174890, 18024567
    • Narsai R, Howell KA, Millar AH, O'Toole N, Small I, Whelan J. Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana. Plant Cell 2007, 19(11):3418-3436. 10.1105/tpc.107.055046, 2174890, 18024567.
    • (2007) Plant Cell , vol.19 , Issue.11 , pp. 3418-3436
    • Narsai, R.1    Howell, K.A.2    Millar, A.H.3    O'Toole, N.4    Small, I.5    Whelan, J.6


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