메뉴 건너뛰기




Volumn 8, Issue 12, 2013, Pages

The rhizosphere selects for particular groups of Acidobacteria and Verrucomicrobia

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84892635754     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0082443     Document Type: Article
Times cited : (74)

References (55)
  • 1
    • 0033841434 scopus 로고    scopus 로고
    • Spatial distribution of 16S rRNA levels from uncultured acidobacteria in soil
    • Felske A, De Vos WM, Akkermans ADL (2000) Spatial distribution of 16S rRNA levels from uncultured acidobacteria in soil. Lett Appl Microbiol 31: 118-122.
    • (2000) Lett Appl Microbiol , vol.31 , pp. 118-122
    • Felske, A.1    De Vos, W.M.2    Akkermans, A.D.L.3
  • 2
    • 40449117321 scopus 로고    scopus 로고
    • Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in Northern China
    • doi: 10.1065/jss2008.01.270
    • Ge Y, Zhang JB, Zhang L-M, Yang M, He J-Z (2008) Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in Northern China. J Soils Sed 8: 43-50. doi: 10.1065/jss2008.01.270.
    • (2008) J Soils Sed , vol.8 , pp. 43-50
    • Ge, Y.1    Zhang, J.B.2    Zhang, L.-M.3    Yang, M.4    He, J.-Z.5
  • 3
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • PubMed: 9733676
    • Hugenholtz P, Goebel BM, Pace NR (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180: 4765-4774. PubMed: 9733676.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 4
    • 33644952722 scopus 로고    scopus 로고
    • Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • doi:10.1128/AEM.72.3.1719-1728.2006. PubMed: 16517615
    • Janssen PH (2006) Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol 72: 1719-1728. doi:10.1128/AEM.72.3.1719-1728.2006. PubMed: 16517615.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1719-1728
    • Janssen, P.H.1
  • 5
    • 63349105158 scopus 로고    scopus 로고
    • A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
    • doi: 10.1038/ismej.2008.127. PubMed: 19129864
    • Jones RT, Robeson MS, Lauber CL, Hamady M, Knight R et al. (2009) A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME J 3: 442-453. doi: 10.1038/ismej.2008.127. PubMed: 19129864.
    • (2009) ISME J , vol.3 , pp. 442-453
    • Jones, R.T.1    Robeson, M.S.2    Lauber, C.L.3    Hamady, M.4    Knight, R.5
  • 6
    • 47349088053 scopus 로고    scopus 로고
    • Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil
    • doi:10.1111/j.1574-6968.2008.01232.x. PubMed: 18557943
    • Lee S-H, Ka J-O, Cho J-C (2008) Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil. FEMS Microbiol Lett 285: 263-269. doi:10.1111/j.1574-6968.2008.01232.x. PubMed: 18557943.
    • (2008) FEMS Microbiol Lett , vol.285 , pp. 263-269
    • Lee, S.-H.1    Ka, J.-O.2    Cho, J.-C.3
  • 7
    • 34547912014 scopus 로고    scopus 로고
    • The Phylum Verrucomicrobia: A Phylogenetically heterogeneous bacterial group
    • Schlesner H, Jenkins C, Staley JT (2006) The Phylum Verrucomicrobia: A Phylogenetically heterogeneous bacterial group. Prokaryotes 7: 881-896.
    • (2006) Prokaryotes , vol.7 , pp. 881-896
    • Schlesner, H.1    Jenkins, C.2    Staley, J.T.3
  • 8
    • 68249089059 scopus 로고    scopus 로고
    • Exploration of hitherto-uncultured bacteria from the rhizosphere
    • doi:10.1111/j.1574-6941.2009.00702.x. PubMed: 19508698
    • Nunes da Rocha U, Van Overbeek LS, Van Elsas JD (2009) Exploration of hitherto-uncultured bacteria from the rhizosphere. FEMS Microbiol Ecol 69: 313-328. doi:10.1111/j.1574-6941.2009.00702.x. PubMed: 19508698.
    • (2009) FEMS Microbiol Ecol , vol.69 , pp. 313-328
    • Nunes Da Rocha, U.1    Van Overbeek, L.S.2    Van Elsas, J.D.3
  • 9
    • 0036890139 scopus 로고    scopus 로고
    • Molecular characterization of bacterial diversity in Lodgepole pine (Pinus contora) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source
    • doi:10.1111/j.1574-6941.2002.tb01024.x. PubMed: 19709294
    • Chow ML, Radomski CC, McDermott JM, Davies J, Axelrood PE (2002) Molecular characterization of bacterial diversity in Lodgepole pine (Pinus contora) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source. FEMS Microbiol Ecol 42: 347-357. doi:10.1111/j.1574-6941.2002.tb01024.x. PubMed: 19709294.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 347-357
    • Chow, M.L.1    Radomski, C.C.2    McDermott, J.M.3    Davies, J.4    Axelrood, P.E.5
  • 10
    • 58549095910 scopus 로고    scopus 로고
    • Selective progressive response of soil microbial community to wild oat roots
    • doi:10.1038/ismej.2008.103. PubMed: 19005498
    • DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE et al. (2009) Selective progressive response of soil microbial community to wild oat roots. ISME J 3: 168-178. doi:10.1038/ismej.2008.103. PubMed: 19005498.
    • (2009) ISME J , vol.3 , pp. 168-178
    • DeAngelis, K.M.1    Brodie, E.L.2    DeSantis, T.Z.3    Andersen, G.L.4    Lindow, S.E.5
  • 11
    • 38849201649 scopus 로고    scopus 로고
    • Differences in vegetation composition and plant species identity lead to only minor changes in soil-borne microbial communities in a former arable field
    • doi:10.1111/j.1574-6941.2007.00428.x. PubMed: 18205817
    • Kielak A, Pijl AS, Van Veen JA, Kowalchuk GA (2008) Differences in vegetation composition and plant species identity lead to only minor changes in soil-borne microbial communities in a former arable field. FEMS Microbiol Ecol 63: 372-382. doi:10.1111/j.1574-6941.2007.00428.x. PubMed: 18205817.
    • (2008) FEMS Microbiol Ecol , vol.63 , pp. 372-382
    • Kielak, A.1    Pijl, A.S.2    Van Veen, J.A.3    Kowalchuk, G.A.4
  • 12
    • 80054119408 scopus 로고    scopus 로고
    • Verrucomicrobia subdivision 1 strains display a difference in the colonization of the leek (Allium porrum) rhizosphere
    • doi:10.1111/j.1574-6941.2011.01156.x. PubMed: 21692818
    • Nunes da Rocha U, Van Elsas JD, Van Overbeek LS (2011) Verrucomicrobia subdivision 1 strains display a difference in the colonization of the leek (Allium porrum) rhizosphere. FEMS Microbiol Ecol 78: 297-303. doi:10.1111/j.1574-6941.2011.01156.x. PubMed: 21692818.
    • (2011) FEMS Microbiol Ecol , vol.78 , pp. 297-303
    • Nunes Da Rocha, U.1    Van Elsas, J.D.2    Van Overbeek, L.S.3
  • 13
    • 33745134693 scopus 로고    scopus 로고
    • Potential of a 16S rRNA-based taxonomic micro array for analyzing the rhizopshere effects of maize on Agrobacterium spp. and bacterial communities
    • doi: 10.1128/AEM.02686-05. PubMed: 16751545
    • Sanguin H, Remenant B, Dechesne A, Thioulouse J, Vogel TM et al. (2006) Potential of a 16S rRNA-based taxonomic micro array for analyzing the rhizopshere effects of maize on Agrobacterium spp. and bacterial communities. Appl Environ Microbiol 72: 4302-4312. doi: 10.1128/AEM.02686-05. PubMed: 16751545.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4302-4312
    • Sanguin, H.1    Remenant, B.2    Dechesne, A.3    Thioulouse, J.4    Vogel, T.M.5
  • 14
    • 35948961572 scopus 로고    scopus 로고
    • Effects of plant biomass, plant diversity, and water content on bacterial communities in soil lysimeters: Implications for the determinants of bacterial diversity
    • doi:10.1128/AEM.01533-07. PubMed: 17873072
    • Zul D, Denzel S, Kotz A, Overmann J (2007) Effects of plant biomass, plant diversity, and water content on bacterial communities in soil lysimeters: Implications for the determinants of bacterial diversity. Appl Environ Microbiol 73: 6916-6929. doi:10.1128/AEM.01533-07. PubMed: 17873072.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6916-6929
    • Zul, D.1    Denzel, S.2    Kotz, A.3    Overmann, J.4
  • 15
    • 33947236971 scopus 로고    scopus 로고
    • Toward an ecological classification of soil bacteria
    • doi: 10.1890/05-1839. PubMed: 17601128
    • Fierer N, Bradford MA, Jackson RB (2007) Toward an ecological classification of soil bacteria. Ecology 88: 1354-1364. doi: 10.1890/05-1839. PubMed: 17601128.
    • (2007) Ecology , vol.88 , pp. 1354-1364
    • Fierer, N.1    Bradford, M.A.2    Jackson, R.B.3
  • 16
    • 79551492681 scopus 로고    scopus 로고
    • Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria
    • doi:10.1128/AEM.01080-10. PubMed: 21097594
    • Eichorst SA, Kuske CR, Schmidt TM (2011) Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria. Appl Environ Microbiol 77: 586-596. doi:10.1128/AEM.01080-10. PubMed: 21097594.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 586-596
    • Eichorst, S.A.1    Kuske, C.R.2    Schmidt, T.M.3
  • 17
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencingbased assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • doi:10.1128/AEM.00335-09. PubMed: 19502440
    • Lauber CL, Hamady M, Knight R, Fierer N (2009) Pyrosequencingbased assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75: 5111-5120. doi:10.1128/AEM.00335-09. PubMed: 19502440.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 18
    • 43449101881 scopus 로고    scopus 로고
    • Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat
    • doi:10.1038/ismej.2008.7. PubMed: 18309356
    • Pankratov TA, Serkebaeva YM, Kulichevskaya IS, Liesack W, Dedysh SN (2008) Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat. ISME J 2: 551-560. doi:10.1038/ismej.2008.7. PubMed: 18309356.
    • (2008) ISME J , vol.2 , pp. 551-560
    • Pankratov, T.A.1    Serkebaeva, Y.M.2    Kulichevskaya, I.S.3    Liesack, W.4    Dedysh, S.N.5
  • 19
    • 77956996314 scopus 로고    scopus 로고
    • Soil bacterial and fungal communities across a pH gradient in an arable soil
    • doi:10.1038/ismej.2010.58. PubMed: 20445636
    • Rousk J, Bååth E, Brookes PC, Lauber CL, Lozupone C et al. (2010) Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J 4: 1340-1351. doi:10.1038/ismej.2010.58. PubMed: 20445636.
    • (2010) ISME J , vol.4 , pp. 1340-1351
    • Rousk, J.1    Bååth, E.2    Brookes, P.C.3    Lauber, C.L.4    Lozupone, C.5
  • 20
    • 33644962444 scopus 로고    scopus 로고
    • Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil
    • doi:10.1128/AEM.72.3.1852-1857.2006. PubMed: 16517631
    • Sait M, Davis KE, Janssen PH (2006) Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil. Appl Environ Microbiol 72: 1852-1857. doi:10.1128/AEM.72.3.1852-1857. 2006. PubMed: 16517631.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1852-1857
    • Sait, M.1    Davis, K.E.2    Janssen, P.H.3
  • 21
    • 77749330122 scopus 로고    scopus 로고
    • A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria reveals a lineage-specific distribution in a clay fraction
    • doi:10.1016/j.soilbio.2010.01.007
    • Liles MR, Turkmen O, Manske BF, Zhang M, Rouillard J-M et al. (2010) A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria reveals a lineage-specific distribution in a clay fraction. Soil Biol Biochem 42: 739-747. doi:10.1016/j.soilbio.2010.01.007.
    • (2010) Soil Biol Biochem , vol.42 , pp. 739-747
    • Liles, M.R.1    Turkmen, O.2    Manske, B.F.3    Zhang, M.4    Rouillard, J.-M.5
  • 22
    • 84873122935 scopus 로고    scopus 로고
    • Acidobacterial community responses to agricultural management of soybean in Amazon forest soils
    • doi:10.1111/1574-6941.12018. PubMed: 23013447
    • Navarrete AA, Kuramae EE, de Hollander M, Pijl AS, Van Veen JA et al. (2013) Acidobacterial community responses to agricultural management of soybean in Amazon forest soils. FEMS Microbiol Ecol 83: 607-621. doi:10.1111/1574-6941. 12018. PubMed: 23013447.
    • (2013) FEMS Microbiol Ecol , vol.83 , pp. 607-621
    • Navarrete, A.A.1    Kuramae, E.E.2    De Hollander, M.3    Pijl, A.S.4    Van Veen, J.A.5
  • 23
    • 84870659166 scopus 로고    scopus 로고
    • Bacterial indicator of agricultural management for soil under no-till production
    • doi:10.1371/journal.pone.0051075. PubMed: 23226466
    • Figuerola ELM, Guerrero LD, Rosa SM, Simonetti L, Duval ME, Galantini JA et al. (2012) Bacterial indicator of agricultural management for soil under no-till production. PLOS ONE7: e51075. doi:10.1371/journal.pone.0051075. PubMed: 23226466.
    • (2012) PLOS ONE , vol.7
    • Figuerola, E.L.M.1    Guerrero, L.D.2    Rosa, S.M.3    Simonetti, L.4    Duval, M.E.5    Galantini, J.A.6
  • 24
    • 77953619002 scopus 로고    scopus 로고
    • The ecological coherence of high bacterial taxonomical ranks
    • doi:10.1038/nrmicro2367
    • Phillippot L, Andersson SGE, Battin TJ, Prosser JI, Schimel JP et al. (2010) The ecological coherence of high bacterial taxonomical ranks. Nature Rev 8: 523-529. doi:10.1038/nrmicro2367.
    • (2010) Nature Rev , vol.8 , pp. 523-529
    • Phillippot, L.1    Andersson, S.G.E.2    Battin, T.J.3    Prosser, J.I.4    Schimel, J.P.5
  • 25
    • 0035344248 scopus 로고    scopus 로고
    • Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
    • doi:10.1128/AEM.67.5.2284-2291.2001. PubMed: 11319113
    • Smit E, Leeflang P, Gommans S, van den Broek J, van Mil S et al. (2001) Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl Environ Microbiol 67: 2284-2291. doi:10.1128/AEM.67.5.2284-2291. 2001. PubMed: 11319113.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2284-2291
    • Smit, E.1    Leeflang, P.2    Gommans, S.3    Van Den Broek, J.4    Van Mil, S.5
  • 26
    • 0035019465 scopus 로고    scopus 로고
    • Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil
    • doi:10.1111/j.1574-6941.2001.tb00793.x. PubMed: 11248395
    • Buckley DH, Schmidt TM (2001) Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil. FEMS Microbiol Ecol 35: 105-112. doi:10.1111/j.1574-6941.2001.tb00793.x. PubMed: 11248395.
    • (2001) FEMS Microbiol Ecol , vol.35 , pp. 105-112
    • Buckley, D.H.1    Schmidt, T.M.2
  • 27
    • 78149471235 scopus 로고    scopus 로고
    • Bacterial community diversity in the Brazilian Atlantic forest soils
    • doi:10.1007/s00248-010-9750-2. PubMed: 20886336
    • Bruce T, Martinez IB, Maia Neto O, Vicente ACP, Kruger RH et al. (2010) Bacterial community diversity in the Brazilian Atlantic forest soils. Microb Ecol 60: 840-849. doi:10.1007/s00248-010-9750-2. PubMed: 20886336.
    • (2010) Microb Ecol , vol.60 , pp. 840-849
    • Bruce, T.1    Martinez, I.B.2    Maia Neto, O.3    Vicente, A.C.P.4    Kruger, R.H.5
  • 28
    • 79955980612 scopus 로고    scopus 로고
    • The under-recognized dominance of Verrucomicrobia in soil bacterial communities
    • doi:10.1016/j.soilbio.2011.03.012. PubMed: 22267877
    • Bergmann GT, Bates ST, Eilers KG, Lauber CL, Caporaso JG et al. (2011) The under-recognized dominance of Verrucomicrobia in soil bacterial communities. Soil Biol Biochem 43: 1450-1455. doi:10.1016/j.soilbio.2011.03.012. PubMed: 22267877.
    • (2011) Soil Biol Biochem , vol.43 , pp. 1450-1455
    • Bergmann, G.T.1    Bates, S.T.2    Eilers, K.G.3    Lauber, C.L.4    Caporaso, J.G.5
  • 29
    • 83055188786 scopus 로고    scopus 로고
    • Recovery of as-yet-uncultured Acidobacteria on dilute solid media
    • doi:10.1128/AEM.05956-11. PubMed: 21948845
    • George IF, Hartmann M, Liles MR, Agathos SN (2011) Recovery of as-yet-uncultured Acidobacteria on dilute solid media. Appl Environ Microbiol 77: 8184-8188. doi:10.1128/AEM.05956-11. PubMed: 21948845.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 8184-8188
    • George, I.F.1    Hartmann, M.2    Liles, M.R.3    Agathos, S.N.4
  • 30
    • 0036250036 scopus 로고    scopus 로고
    • Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
    • doi: 10.1128/AEM.68.5.2391-2396.2002. PubMed: 11976113
    • Janssen PH, Yates PS, Grinton BE, Taylor PM, Sait M (2002) Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl Environ Microbiol 68: 2391-2396. doi: 10.1128/AEM.68.5. 2391-2396.2002. PubMed: 11976113.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2391-2396
    • Janssen, P.H.1    Yates, P.S.2    Grinton, B.E.3    Taylor, P.M.4    Sait, M.5
  • 31
    • 2142687113 scopus 로고    scopus 로고
    • Laboratory cultivation of widespread and previously uncultured soil bacteria
    • doi:10.1128/AEM.69.12.7210-7215.2003. PubMed: 14660368
    • Joseph SJ, Hugenholtz P, Sangwan P, Osborne CA, Janssen PH (2003) Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl Environ Microbiol 69: 7210-7215. doi:10.1128/AEM.69.12.7210-7215.2003. PubMed: 14660368.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 7210-7215
    • Joseph, S.J.1    Hugenholtz, P.2    Sangwan, P.3    Osborne, C.A.4    Janssen, P.H.5
  • 32
    • 77957863316 scopus 로고    scopus 로고
    • Real-time PCR detection of Holophagae (Acidobacteria) and Verrucomicrobia subdivision 1 groups in bulk and leek (Allium porrum) rhizosphere soils
    • doi:10.1016/j.mimet.2010.08.003
    • Nunes da Rocha U, Van Elsas JD, Van Overbeek LS (2010) Real-time PCR detection of Holophagae (Acidobacteria) and Verrucomicrobia subdivision 1 groups in bulk and leek (Allium porrum) rhizosphere soils. J Microbiol Methods 83: 141-148. doi:10.1016/j.mimet.2010.08.003.
    • (2010) J Microbiol Methods , vol.83 , pp. 141-148
    • Nunes Da Rocha, U.1    Van Elsas, J.D.2    Van Overbeek, L.S.3
  • 33
    • 29144436663 scopus 로고    scopus 로고
    • Detection and cultivation of soil Verrucomicrobia
    • doi:10.1128/AEM.71.12.8402-8410.2005. PubMed: 16332828
    • Sangwan P, Kovac S, Davis KER, Sait M, Janssen PH (2005) Detection and cultivation of soil Verrucomicrobia. Appl Environ Microbiol 71: 8402-8410. doi:10.1128/AEM.71.12.8402-8410.2005. PubMed: 16332828.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8402-8410
    • Sangwan, P.1    Kovac, S.2    Davis, K.E.R.3    Sait, M.4    Janssen, P.H.5
  • 34
    • 77957862191 scopus 로고    scopus 로고
    • Cultivation of hitherto-uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum L.) rhizosphere
    • Nunes da Rocha U, Andreote FD, De Azevedo JL, Van Elsas JD, Van Overbeek LS (2010) Cultivation of hitherto-uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum L.) rhizosphere. J Soils Sed 10: 326-339.
    • (2010) J Soils Sed , vol.10 , pp. 326-339
    • Nunes Da Rocha, U.1    Andreote, F.D.2    De Azevedo, J.L.3    Van Elsas, J.D.4    Van Overbeek, L.S.5
  • 35
    • 70349551727 scopus 로고    scopus 로고
    • Plant-growth-promoting rhizobacteria
    • doi:10.1146/annurev.micro.62.081307.162918. PubMed: 19575558
    • Lugtenberg B, Kamilova F (2009) Plant-growth-promoting rhizobacteria. Annu Rev Microbiol 63: 541-556. doi:10.1146/annurev.micro.62.081307.162918. PubMed: 19575558.
    • (2009) Annu Rev Microbiol , vol.63 , pp. 541-556
    • Lugtenberg, B.1    Kamilova, F.2
  • 36
    • 0031841952 scopus 로고    scopus 로고
    • Certification of an air-dry soil for pH and extractable nutrients using one hundredth molar calcium chloride
    • doi: 10.1080/00103629809370010
    • Houba VJG, Novozamsky I, Van Dijk D (1998) Certification of an air-dry soil for pH and extractable nutrients using one hundredth molar calcium chloride. Commun Soil Sci Plant Anal 29: 1083-1090. doi: 10.1080/ 00103629809370010.
    • (1998) Commun Soil Sci Plant Anal , vol.29 , pp. 1083-1090
    • Houba, V.J.G.1    Novozamsky, I.2    Van Dijk, D.3
  • 37
    • 0001857117 scopus 로고
    • 16S/ 23S rRNA sequencing
    • E StackebrandtM Goodfellow, John Wiley and Sons, Chichester, UK
    • Lane DJ (1991) 16S/ 23S rRNA sequencing. In E StackebrandtM Goodfellow, Nucleic acid techniques in bacterial systematics. John Wiley and Sons, Chichester, UK. pp. 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 38
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • PubMed: 7683183
    • Muyzer G, De Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700. PubMed: 7683183.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 39
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • doi:10.1093/nar/gkm864. PubMed: 17947321
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W et al. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196. doi:10.1093/nar/gkm864. PubMed: 17947321.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5
  • 40
    • 45949109669 scopus 로고    scopus 로고
    • MEGA; A biologist-centric software for evolutionary analysis of DNA and protein sequences
    • doi:10.1093/bib/bbn017. PubMed: 18417537
    • Kumar S, Nei M, Dudley J, Tamura K (2008) MEGA; A biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9: 299-306. doi:10.1093/bib/bbn017. PubMed: 18417537.
    • (2008) Brief Bioinform , vol.9 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 41
    • 0032835208 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacterial communities differing in degree of proximity of Lollium perenne and Trifolium repens roots
    • doi:10.1016/S0929-1393(99)00028-1
    • Marilley L, Aragno M (1999) Phylogenetic diversity of bacterial communities differing in degree of proximity of Lollium perenne and Trifolium repens roots. Appl Soil Ecol 13: 127-136. doi:10.1016/S0929-1393(99)00028-1.
    • (1999) Appl Soil Ecol , vol.13 , pp. 127-136
    • Marilley, L.1    Aragno, M.2
  • 42
    • 0036203424 scopus 로고    scopus 로고
    • Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland
    • doi:10.1128/AEM.68.4.1854-1863.2002. PubMed: 11916705
    • Kuske CR, Ticknor LO, Miller ME, Dunbar JM, Davis JA et al. (2002) Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland. Appl Environ Microbiol 68: 1854-1863. doi:10.1128/AEM.68.4.1854-1863.2002. PubMed: 11916705.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1854-1863
    • Kuske, C.R.1    Ticknor, L.O.2    Miller, M.E.3    Dunbar, J.M.4    Davis, J.A.5
  • 43
    • 44949148053 scopus 로고    scopus 로고
    • Bacterial diversity of Taxus rhizosphere: Culture-independent and culture-dependent approaches
    • doi:10.1111/j.1574-6968.2008.01201.x. PubMed: 18576948
    • Hao DC, Ge GB, Yang L (2008) Bacterial diversity of Taxus rhizosphere: culture-independent and culture-dependent approaches. FEMS Microbiol Lett 284: 204-212. doi:10.1111/j.1574-6968.2008.01201.x. PubMed: 18576948.
    • (2008) FEMS Microbiol Lett , vol.284 , pp. 204-212
    • Hao, D.C.1    Ge, G.B.2    Yang, L.3
  • 44
    • 2442636907 scopus 로고    scopus 로고
    • Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense
    • doi:10.1128/AEM.70.5.2667-2677.2004. PubMed: 15128517
    • Idris R, Trifonova R, Puschenreiter M, Wenzel WW, Sessitsch A (2004) Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense. Appl Environ Microbiol 70: 2667-2677. doi:10.1128/AEM.70.5.2667-2677.2004. PubMed: 15128517.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2667-2677
    • Idris, R.1    Trifonova, R.2    Puschenreiter, M.3    Wenzel, W.W.4    Sessitsch, A.5
  • 45
    • 0033832931 scopus 로고    scopus 로고
    • Novel bacterial diversity recovered from the rhizosphere of oilseed rape (Brassica napus) determined by the analysis of 16S ribosomal DNA
    • doi:10.1023/A:1002745312030. PubMed: 11016691
    • Macrae A, Rimmer DL, O'Donnell AG (2000) Novel bacterial diversity recovered from the rhizosphere of oilseed rape (Brassica napus) determined by the analysis of 16S ribosomal DNA. Antonie Van Leeuwenhoek 78: 13-21. doi:10.1023/A:1002745312030. PubMed: 11016691.
    • (2000) Antonie Van Leeuwenhoek , vol.78 , pp. 13-21
    • Macrae, A.1    Rimmer, D.L.2    O'Donnell, A.G.3
  • 46
    • 84857097631 scopus 로고    scopus 로고
    • Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen. nov., sp. nov., reveals microaerophily and nitrogen fixation genes
    • doi:10.1128/AEM.06466-11. PubMed: 22194293
    • Wertz JT, Eunji K, Breznak JA, Schmidt TM, Rodrigues LM (2012) Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen. nov., sp. nov., reveals microaerophily and nitrogen fixation genes. Appl Environ Microbiol 78: 1544-1555. doi:10.1128/AEM.06466-11. PubMed: 22194293.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 1544-1555
    • Wertz, J.T.1    Eunji, K.2    Breznak, J.A.3    Schmidt, T.M.4    Rodrigues, L.M.5
  • 47
    • 34247606048 scopus 로고    scopus 로고
    • Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria
    • doi: 10.1128/AEM.02140-06. PubMed: 17293520
    • Eichorst SA, Breznak JA, Schmidt TM (2007) Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol 73: 2708-2717. doi: 10.1128/AEM.02140-06. PubMed: 17293520.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2708-2717
    • Eichorst, S.A.1    Breznak, J.A.2    Schmidt, T.M.3
  • 48
    • 63849207489 scopus 로고    scopus 로고
    • Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils
    • doi:10.1128/AEM.02294-08. PubMed: 19201974
    • Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM et al. (2009) Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol 75: 2046-2056. doi:10.1128/AEM.02294-08. PubMed: 19201974.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2046-2056
    • Ward, N.L.1    Challacombe, J.F.2    Janssen, P.H.3    Henrissat, B.4    Coutinho, P.M.5
  • 49
    • 22144470189 scopus 로고    scopus 로고
    • Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays
    • doi:10.1128/AEM. 71.7.4117-4120.2005. PubMed: 16000830
    • Fierer N, Jackson JA, Vilgalys R, Jackson RB (2005) Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Appl Environ Microbiol 71: 4117-4120. doi:10.1128/AEM. 71.7.4117-4120.2005. PubMed: 16000830.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4117-4120
    • Fierer, N.1    Jackson, J.A.2    Vilgalys, R.3    Jackson, R.B.4
  • 50
    • 84855614028 scopus 로고    scopus 로고
    • Comparative analysis of bacterial communities in a potato field as determined by pyrosequencing
    • doi:10.1371/journal.pone.0023321. PubMed: 21886785
    • Inceoǧlu Ö, Al-Soud WA, Salles JF, Semenov AV, van Elsas JD (2011) Comparative analysis of bacterial communities in a potato field as determined by pyrosequencing. PLOS ONE 6: e23321. doi:10.1371/journal.pone. 0023321. PubMed: 21886785.
    • (2011) PLOS ONE , vol.6
    • Inceoǧlu, Ö.1    Al-Soud, W.A.2    Salles, J.F.3    Semenov, A.V.4    Van Elsas, J.D.5
  • 51
    • 33744927902 scopus 로고    scopus 로고
    • The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance
    • doi:10.1016/j.copbio.2006.05.005. PubMed: 16704931
    • Wagner M, Horn M (2006) The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr Opin Biotechnol 17: 241-249. doi:10.1016/j.copbio.2006.05.005. PubMed: 16704931.
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 241-249
    • Wagner, M.1    Horn, M.2
  • 52
    • 84886475985 scopus 로고    scopus 로고
    • Exploration of Hitherto-Uncultured Bacteria from the Rhizosphere
    • chapter 16 de Bruijn FJ, editor, John Wiley and Sons, Chichester, UK
    • Van Overbeek LS (2013) Exploration of Hitherto-Uncultured Bacteria from the Rhizosphere (chapter 16). In de Bruijn FJ, editor, Molecular microbial ecology of the rhizosphere. John Wiley and Sons, Chichester, UK.
    • (2013) Molecular Microbial Ecology of the Rhizosphere
    • Van Overbeek, L.S.1
  • 53
    • 0032733240 scopus 로고    scopus 로고
    • Geothrix fermentas gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer
    • doi:10.1099/00207713-49-4-1615. PubMed: 10555343
    • Coates JD, Ellis DJ, Gaw VV, Lovley DR (1999) Geothrix fermentas gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon- contaminated aquifer. Int J Syst Bacteriol 49: 1615-1622. doi:10.1099/00207713- 49-4-1615. PubMed: 10555343.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 1615-1622
    • Coates, J.D.1    Ellis, D.J.2    Gaw, V.V.3    Lovley, D.R.4
  • 54
    • 0027937278 scopus 로고
    • Holophaga foetida gen. nov., sp. nov., a new homoacetogenic bacterium degrading methoxylated aromatic compounds
    • doi: 10.1007/s002030050106. PubMed: 8085918
    • Liesack W, Bak F, Kreft JU, Stackebrandt E (1994) Holophaga foetida gen. nov., sp. nov., a new homoacetogenic bacterium degrading methoxylated aromatic compounds. Arch Microbiol 162: 85-90. doi: 10.1007/s002030050106. PubMed: 8085918.
    • (1994) Arch Microbiol , vol.162 , pp. 85-90
    • Liesack, W.1    Bak, F.2    Kreft, J.U.3    Stackebrandt, E.4
  • 55
    • 55849095838 scopus 로고    scopus 로고
    • Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales, ord. nov., Holophagaceae fam. nov., Holophagales or. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'
    • Fukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S (2008) Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales, ord. nov., Holophagaceae fam. nov., Holophagales or. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'. Int J Syst Evol Microbiol 58: 2597-2601.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2597-2601
    • Fukunaga, Y.1    Kurahashi, M.2    Yanagi, K.3    Yokota, A.4    Harayama, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.