메뉴 건너뛰기




Volumn 78, Issue 2, 2011, Pages 297-305

Verrucomicrobia subdivision 1 strains display a difference in the colonization of the leek (Allium porrum) rhizosphere

Author keywords

Allium porrum; Candidatus genus Rhizospheria; Luteolibacter; Plant soil microcosm; Rhizosphere; Verrucomicrobia subdivision 1

Indexed keywords

PRIMER DNA;

EID: 80054119408     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2011.01156.x     Document Type: Article
Times cited : (21)

References (39)
  • 1
    • 0042199137 scopus 로고    scopus 로고
    • Impact of artificial root exudates on the bacterial community structure in bulk soil and maize rhizosphere
    • Baudoin E, Benizri E & Gauckert A (2003) Impact of artificial root exudates on the bacterial community structure in bulk soil and maize rhizosphere. Soil Biol Biochem35: 1183-1192.
    • (2003) Soil Biol Biochem , vol.35 , pp. 1183-1192
    • Baudoin, E.1    Benizri, E.2    Gauckert, A.3
  • 2
    • 61649118780 scopus 로고    scopus 로고
    • Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere
    • Berg G & Smalla K (2009) Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol Ecol68: 1-13.
    • (2009) FEMS Microbiol Ecol , vol.68 , pp. 1-13
    • Berg, G.1    Smalla, K.2
  • 4
    • 0036890139 scopus 로고    scopus 로고
    • Molecular characterization of bacterial diversity in Lodgepole pine (Pinus contorta) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source
    • Chow ML, Radomski CC, McDermott JM, Davies J & Axelrood PE (2002) Molecular characterization of bacterial diversity in Lodgepole pine (Pinus contorta) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source. FEMS Microbiol Ecol42: 347-357.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 347-357
    • Chow, M.L.1    Radomski, C.C.2    McDermott, J.M.3    Davies, J.4    Axelrood, P.E.5
  • 5
    • 5444248493 scopus 로고    scopus 로고
    • Akkermansia muciniphila gen. Nov., sp. Nov., a human intestinal mucin-degrading bacterium
    • Derrien M, Vaughan EE, Plugge CM & De Vos WM (2004) Akkermansia muciniphila gen. Nov., sp. Nov., a human intestinal mucin-degrading bacterium. Int J Syst Evol Micr50: 1965-1972.
    • (2004) Int J Syst Evol Micr , vol.50 , pp. 1965-1972
    • Derrien, M.1    Vaughan, E.E.2    Plugge, C.M.3    De Vos, W.M.4
  • 9
    • 0000685441 scopus 로고    scopus 로고
    • The road map to the manual
    • 2nd edn (BooneDR & CastenholzRW, eds) - Springer-Verlag, New York.
    • Garrity M & Holt JG (2001) The road map to the manual. Bergey's Manual of Systematic Bacteriology, 2nd edn (Boone DR & Castenholz RW, eds), pp. 119-162. Springer-Verlag, New York.
    • (2001) Bergey's Manual of Systematic Bacteriology , pp. 119-162
    • Garrity, M.1    Holt, J.G.2
  • 12
    • 0034476832 scopus 로고    scopus 로고
    • Survival and cell culturability of biocontrol Pseudomonas fluorescens CHAO in the rhizosphere of cucumber grown in two soils of contrasting fertility status
    • Hase C, Hottinger M, Moënne-Loccoz YL & Defago G (2000) Survival and cell culturability of biocontrol Pseudomonas fluorescens CHAO in the rhizosphere of cucumber grown in two soils of contrasting fertility status. Biol Fertil Soils32: 217-221.
    • (2000) Biol Fertil Soils , vol.32 , pp. 217-221
    • Hase, C.1    Hottinger, M.2    Moënne-Loccoz, Y.L.3    Defago, G.4
  • 13
    • 0030778930 scopus 로고    scopus 로고
    • Verrucomicrobia div. nov., a new division of the bacteria containing three new species of Prosthecobacter
    • Hedlund BP, Gosink JJ & Staley JT (1997) Verrucomicrobia div. nov., a new division of the bacteria containing three new species of Prosthecobacter. Antonie van Leeuwenhoek72: 29-38.
    • (1997) Antonie van Leeuwenhoek , vol.72 , pp. 29-38
    • Hedlund, B.P.1    Gosink, J.J.2    Staley, J.T.3
  • 15
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P, Goebel BM & Pace NR (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol180: 4765-4774.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 16
    • 0032419655 scopus 로고    scopus 로고
    • Organic acids in the rhizosphere - a critical review
    • Jones DL (1998) Organic acids in the rhizosphere - a critical review. Plant Soil205: 25-44.
    • (1998) Plant Soil , vol.205 , pp. 25-44
    • Jones, D.L.1
  • 17
    • 38849201649 scopus 로고    scopus 로고
    • Differences in vegetation composition and plant species identity lead to only minor changes in soil-borne microbial communities in a former arable field
    • Kielak A, Pijl AS, Van Veen JA & Kowalchuk GA (2008) Differences in vegetation composition and plant species identity lead to only minor changes in soil-borne microbial communities in a former arable field. FEMS Microbiol Ecol63: 372-382.
    • (2008) FEMS Microbiol Ecol , vol.63 , pp. 372-382
    • Kielak, A.1    Pijl, A.S.2    Van Veen, J.A.3    Kowalchuk, G.A.4
  • 18
    • 0000967657 scopus 로고
    • A method for determining concentration profiles at the soil-root interface by thin slicing rhizospheric soil
    • Kuchenbuch R & Jungk A (1982) A method for determining concentration profiles at the soil-root interface by thin slicing rhizospheric soil. Plant Soil68: 391-394.
    • (1982) Plant Soil , vol.68 , pp. 391-394
    • Kuchenbuch, R.1    Jungk, A.2
  • 21
    • 70349551727 scopus 로고    scopus 로고
    • Plant-growth-promoting rhizobacteria
    • Lugtenberg B & Kamilova F (2009) Plant-growth-promoting rhizobacteria. Annu Rev Microbiol63: 541-556.
    • (2009) Annu Rev Microbiol , vol.63 , pp. 541-556
    • Lugtenberg, B.1    Kamilova, F.2
  • 22
    • 79151485835 scopus 로고    scopus 로고
    • Diversity of cyanobacterial phylotypes in a Mediterranean drinking water reservoir (Marathonas, Greece)
    • Lymperopoulou DS, Kormas KA, Moustaka-Gouni M & Karagouni AD (2011) Diversity of cyanobacterial phylotypes in a Mediterranean drinking water reservoir (Marathonas, Greece). Environ Monit Assess173: 155-165.
    • (2011) Environ Monit Assess , vol.173 , pp. 155-165
    • Lymperopoulou, D.S.1    Kormas, K.A.2    Moustaka-Gouni, M.3    Karagouni, A.D.4
  • 23
    • 77957862191 scopus 로고    scopus 로고
    • Cultivation of hitherto-uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum L.) rhizosphere
    • Nunes da Rocha U, Andreote FD, de Azevedo JL, van Elsas JD & Van Overbeek LS (2009a) Cultivation of hitherto-uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum L.) rhizosphere. J Soil Sediments10: 326-339.
    • (2009) J Soil Sediments , vol.10 , pp. 326-339
    • Nunes da Rocha, U.1    Andreote, F.D.2    de Azevedo, J.L.3    van Elsas, J.D.4    Van Overbeek, L.S.5
  • 25
    • 77957863316 scopus 로고    scopus 로고
    • Real-time PCR detection of Holophagae (Acidobacteria), Luteolibacter and Verrucomicrobia subdivision 1 groups in bulk and leek (Allium porrum) rhizosphere soils
    • Nunes da Rocha U, Van Elsas JD & Van Overbeek LS (2010) Real-time PCR detection of Holophagae (Acidobacteria), Luteolibacter and Verrucomicrobia subdivision 1 groups in bulk and leek (Allium porrum) rhizosphere soils. J Microbiol Meth83: 141-148.
    • (2011) J Microbiol Meth , vol.83 , pp. 141-148
    • Nunes da Rocha, U.1    Van Elsas, J.D.2    Van Overbeek, L.S.3
  • 26
    • 0002275272 scopus 로고    scopus 로고
    • Characterization of the diversity of ecologically important microbes by rep-PCR genomic fingerprinting
    • (KowalchukGA, De BruijnFJ, HeadIM, AkkermansAD & Van ElsasJD, eds) - Springer Verlag, Berlin.
    • Rademaker JLW, Louws FJ & De Bruijn FJ (1998) Characterization of the diversity of ecologically important microbes by rep-PCR genomic fingerprinting. Molecular Microbial Ecology Manual (Kowalchuk GA, De Bruijn FJ, Head IM, Akkermans AD & Van Elsas JD, eds), pp. 1-26. Springer Verlag, Berlin.
    • (1998) Molecular Microbial Ecology Manual , pp. 1-26
    • Rademaker, J.L.W.1    Louws, F.J.2    De Bruijn, F.J.3
  • 27
    • 71849111667 scopus 로고    scopus 로고
    • Soil properties are key determinants for the development of exudate gradients in a rhizosphere simulation model
    • Raynoud X (2010) Soil properties are key determinants for the development of exudate gradients in a rhizosphere simulation model. Soil Biol Biochem42: 210-219.
    • (2010) Soil Biol Biochem , vol.42 , pp. 210-219
    • Raynoud, X.1
  • 28
    • 67549107261 scopus 로고    scopus 로고
    • Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana
    • Rosenberg K, Bertaux J, Krome K, Hartmann A, Scheu S & Bonkowski M (2009) Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana. ISME J3: 675-684.
    • (2009) ISME J , vol.3 , pp. 675-684
    • Rosenberg, K.1    Bertaux, J.2    Krome, K.3    Hartmann, A.4    Scheu, S.5    Bonkowski, M.6
  • 29
    • 57749103855 scopus 로고    scopus 로고
    • Root-secreted malic acid recruits beneficial soil bacteria
    • Rudrappa T, Czymmek KJ, Paré PW & Bais HP (2008) Root-secreted malic acid recruits beneficial soil bacteria. Plant Physiol148: 1547-1556.
    • (2008) Plant Physiol , vol.148 , pp. 1547-1556
    • Rudrappa, T.1    Czymmek, K.J.2    Paré, P.W.3    Bais, H.P.4
  • 30
    • 33745134693 scopus 로고    scopus 로고
    • Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities
    • Sanguin H, Remenant B, Dechesne A, Thioulouse JTM, Nesme X, Moënne-Loccoz Y & Grundmann GL (2006) Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Appl Environ Microb72: 4302-4312.
    • (2006) Appl Environ Microb , vol.72 , pp. 4302-4312
    • Sanguin, H.1    Remenant, B.2    Dechesne, A.3    Thioulouse, J.T.M.4    Nesme, X.5    Moënne-Loccoz, Y.6    Grundmann, G.L.7
  • 32
    • 78149471479 scopus 로고    scopus 로고
    • Isolation and partial characterization of bacterial strains on low organic carbon medium from soils fertilized with different organic amendments
    • Senechkin IV, Speksnijder AGCL, Semenov AM, Van Bruggen AHC & Van Overbeek LS (2010) Isolation and partial characterization of bacterial strains on low organic carbon medium from soils fertilized with different organic amendments. Microb Ecol60: 829-839.
    • (2010) Microb Ecol , vol.60 , pp. 829-839
    • Senechkin, I.V.1    Speksnijder, A.G.C.L.2    Semenov, A.M.3    Van Bruggen, A.H.C.4    Van Overbeek, L.S.5
  • 33
    • 0001155232 scopus 로고
    • Bacterial conjugation between pseudomonads in the rhizosphere of wheat
    • Van Elsas JD, Trevors JT & Starodub ME (1988) Bacterial conjugation between pseudomonads in the rhizosphere of wheat. FEMS Microbiol Ecol53: 299-306.
    • (1988) FEMS Microbiol Ecol , vol.53 , pp. 299-306
    • Van Elsas, J.D.1    Trevors, J.T.2    Starodub, M.E.3
  • 34
    • 0027073417 scopus 로고
    • Survival of, and root colonization by, alginate-encapsulated Pseudomonas fluorescens cells following introduction into soil
    • Van Elsas JD, Trevors JT, Jain D, Wolters AC, Heijnen CE & Van Overbeek LS (1992) Survival of, and root colonization by, alginate-encapsulated Pseudomonas fluorescens cells following introduction into soil. Biol Fertil Soils14: 14-22.
    • (1992) Biol Fertil Soils , vol.14 , pp. 14-22
    • Van Elsas, J.D.1    Trevors, J.T.2    Jain, D.3    Wolters, A.C.4    Heijnen, C.E.5    Van Overbeek, L.S.6
  • 35
    • 0028921693 scopus 로고
    • Root exudate-induced promoter activity in Pseudomonas fluorescens mutants in the wheat rhizosphere
    • Van Overbeek LS & Van Elsas JD (1995) Root exudate-induced promoter activity in Pseudomonas fluorescens mutants in the wheat rhizosphere. Appl Environ Microb61: 889-898.
    • (1995) Appl Environ Microb , vol.61 , pp. 889-898
    • Van Overbeek, L.S.1    Van Elsas, J.D.2
  • 36
    • 24944540682 scopus 로고    scopus 로고
    • Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes
    • Wang M, Ahrné S, Jeppsson B & Molin G (2005) Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes. FEMS Microbiol Ecol54: 219-231.
    • (2005) FEMS Microbiol Ecol , vol.54 , pp. 219-231
    • Wang, M.1    Ahrné, S.2    Jeppsson, B.3    Molin, G.4
  • 39
    • 35948961572 scopus 로고    scopus 로고
    • Effects of plant biomass, plant diversity, and water content on bacterial communities in soil lysimeters
    • Appl Environ Microb.
    • Zul D, Denzel S, Kotz A & Overmann J (2007) Effects of plant biomass, plant diversity, and water content on bacterial communities in soil lysimeters: implications for the determinants of bacterial diversity. Appl Environ Microb 73: 6916-6929.
    • (2007) implications for the determinants of bacterial diversity , vol.73 , pp. 6916-6929
    • Zul, D.1    Denzel, S.2    Kotz, A.3    Overmann, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.