메뉴 건너뛰기




Volumn 1, Issue , 2013, Pages 169-177

Exploration of Hitherto-Uncultured Bacteria from the Rhizosphere

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84886475985     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9781118297674.ch16     Document Type: Chapter
Times cited : (3)

References (86)
  • 1
    • 33745942317 scopus 로고    scopus 로고
    • The role of root exudates in rhizosphere interactions with plants and other organisms
    • Bais H, Weir TL, Perry LG, Gilroy S, Vivanco JM. The role of root exudates in rhizosphere interactions with plants and other organisms. Annu Rev Plant Biol 2006;57:233-266.
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 233-266
    • Bais, H.1    Weir, T.L.2    Perry, L.G.3    Gilroy, S.4    Vivanco, J.M.5
  • 2
    • 0032963409 scopus 로고    scopus 로고
    • Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environ­ment
    • Barns SM, Takala SL, Kuske CR. Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environ­ment. Appl Environ Microbiol 1999;65:1731-1737.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1731-1737
    • Barns, S.M.1    Takala, S.L.2    Kuske, C.R.3
  • 3
    • 48349126261 scopus 로고    scopus 로고
    • Chlamydial genes shed light on the evolution of photoautotrophic eukaryotes
    • Becker B, Hoef-Emden K, Melkonian M. Chlamydial genes shed light on the evolution of photoautotrophic eukaryotes. BMC Evol Biol 2008;8:203.
    • (2008) BMC Evol Biol , vol.8 , pp. 203
    • Becker, B.1    Hoef-Emden, K.2    Melkonian, M.3
  • 4
    • 0030985219 scopus 로고    scopus 로고
    • Sloughing of root cap cells decreases the frictional resistance to maize (Zea Mays L.) root growth
    • Bengough AG, McKenzie BM. Sloughing of root cap cells decreases the frictional resistance to maize (Zea Mays L.) root growth. J Exp Bot 1997;48:885-893.
    • (1997) J Exp Bot , vol.48 , pp. 885-893
    • Bengough, A.G.1    McKenzie, B.M.2
  • 5
    • 61649118780 scopus 로고    scopus 로고
    • Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere
    • Berg G, Smalla K. Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol Ecol 2009;68:1-13.
    • (2009) FEMS Microbiol Ecol , vol.68 , pp. 1-13
    • Berg, G.1    Smalla, K.2
  • 6
  • 7
    • 0037224286 scopus 로고    scopus 로고
    • Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, Cyanobacteria, and the Chloroplast
    • Brinkman FSL, Blanchard JL, Cherkasov A, Av-Gay Y, Brunham RC, et al. Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, Cyanobacteria, and the Chloroplast. Genome Res 2002;12:1159-1167.
    • (2002) Genome Res , vol.12 , pp. 1159-1167
    • Brinkman, F.S.L.1    Blanchard, J.L.2    Cherkasov, A.3    Av-Gay, Y.4    Brunham, R.C.5
  • 9
    • 0242684409 scopus 로고    scopus 로고
    • Effect of signal com­pounds and incubation conditions on the culturability of freshwater bacterioplankton
    • Bruns A, NUbel U, Cypionka H, Overmann J. Effect of signal com­pounds and incubation conditions on the culturability of freshwater bacterioplankton. Appl Environ Microbiol 2003;69:1980-1989.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1980-1989
    • Bruns, A.1    Nubel, U.2    Cypionka, H.3    Overmann, J.4
  • 10
    • 0035019465 scopus 로고    scopus 로고
    • Environmental factors influencing the dis­tribution of rRNA from Verrucomicrobia in soil
    • Buckley DH, Schmidt TM. Environmental factors influencing the dis­tribution of rRNA from Verrucomicrobia in soil. FEMS Microbiol Ecol 2001;35:105-112.
    • (2001) FEMS Microbiol Ecol , vol.35 , pp. 105-112
    • Buckley, D.H.1    Schmidt, T.M.2
  • 11
    • 0032752386 scopus 로고    scopus 로고
    • Characterization and identification of numerically abundant cultur- able bacteria from the anoxic bulk soil of rice paddy microcosms
    • Chin K-J, Hahn D, Hengstmann U, Liesack W, Janssen PH. Characterization and identification of numerically abundant cultur- able bacteria from the anoxic bulk soil of rice paddy microcosms. Appl Environ Microbiol 1999;65:5042-5049.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5042-5049
    • Chin, K.-J.1    Hahn, D.2    Hengstmann, U.3    Liesack, W.4    Janssen, P.H.5
  • 12
    • 0036890139 scopus 로고    scopus 로고
    • Molecular characterization of bacterial diversity in Lodgepole pine (Pinus contora) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source
    • Chow ML, Radomski CC, McDermott JM, Davis J, Axelrood PE. Molecular characterization of bacterial diversity in Lodgepole pine (Pinus contora) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source. FEMS Microbiol Ecol 2002;42:347-357.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 347-357
    • Chow, M.L.1    Radomski, C.C.2    McDermott, J.M.3    Davis, J.4    Axelrood, P.E.5
  • 13
    • 13544277388 scopus 로고    scopus 로고
    • Effects of growth medium, inocu- lum size, and incubation time on culturability and isolation of soil bacteria
    • Davis KER, Joseph SJ, Janssen PH. Effects of growth medium, inocu- lum size, and incubation time on culturability and isolation of soil bacteria. Appl Environ Microbiol 2005;71:826-834.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 826-834
    • Davis, K.E.R.1    Joseph, S.J.2    Janssen, P.H.3
  • 14
    • 79952086411 scopus 로고    scopus 로고
    • Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini- colony-forming soil bacteria
    • Davis KER, Sangwan P, Janssen PH. Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini- colony-forming soil bacteria. Environ Microbiol 2011;13:798-805.
    • (2011) Environ Microbiol , vol.13 , pp. 798-805
    • Davis, K.E.R.1    Sangwan, P.2    Janssen, P.H.3
  • 18
    • 79551492681 scopus 로고    scopus 로고
    • Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobac- teria
    • Eichorst SA, Kuske CR, Schmidt TM. Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobac- teria. Appl Environ Microbiol 2011;77:586-596.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 586-596
    • Eichorst, S.A.1    Kuske, C.R.2    Schmidt, T.M.3
  • 19
    • 10044278979 scopus 로고    scopus 로고
    • Composition of freshwater bacterial commu­nities associated with cyanobacterial blooms in four Swedish lakes
    • Eiler A, Bertilsson S. Composition of freshwater bacterial commu­nities associated with cyanobacterial blooms in four Swedish lakes. Environ Microbiol 2004;6:1228-1243.
    • (2004) Environ Microbiol , vol.6 , pp. 1228-1243
    • Eiler, A.1    Bertilsson, S.2
  • 20
    • 57349182720 scopus 로고    scopus 로고
    • Plant host habitat and root exudates shape soil bacterial community structure
    • El Zahar Haicher F, Marol C, Berge O, Rangel-Castr I, Prosser JI, et al. Plant host habitat and root exudates shape soil bacterial community structure. ISME J 2008;2:1221-1230.
    • (2008) ISME J , vol.2 , pp. 1221-1230
    • El Zahar Haicher, F.1    Marol, C.2    Berge, O.3    Rangel-Castr, I.4    Prosser, J.I.5
  • 21
    • 0033841434 scopus 로고    scopus 로고
    • Spatial distribution of 16S rRNA levels from uncultured acidobacteria in soil
    • Felske AWM, De Vos WM, Akkermans ADL. Spatial distribution of 16S rRNA levels from uncultured acidobacteria in soil. Lett Appl Microbiol 2000;31:118-122.
    • (2000) Lett Appl Microbiol , vol.31 , pp. 118-122
    • Felske, A.W.M.1    De Vos, W.M.2    Akkermans, A.D.L.3
  • 22
    • 33947236971 scopus 로고    scopus 로고
    • Toward an ecological classifi­cation of soil bacteria
    • Fierer N, Bradford MA, Jackson RB. Toward an ecological classifi­cation of soil bacteria. Ecology 2007;88:1354-1364.
    • (2007) Ecology , vol.88 , pp. 1354-1364
    • Fierer, N.1    Bradford, M.A.2    Jackson, R.B.3
  • 23
    • 29144482711 scopus 로고    scopus 로고
    • Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria
    • Ferrari BC, Binnerup SJ, Gillings M. Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria. Appl Environ Microbiol 2005;71:8714-8720.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8714-8720
    • Ferrari, B.C.1    Binnerup, S.J.2    Gillings, M.3
  • 24
    • 50249237865 scopus 로고    scopus 로고
    • Cultivating previ- ously uncultured soil bacteria using a soil substrate membrane system
    • Ferrari BC, Winsley T, Gillings M, Binnerup S. Cultivating previ- ously uncultured soil bacteria using a soil substrate membrane system. Nat Protoc 2008;3:1261-1269.
    • (2008) Nat Protoc , vol.3 , pp. 1261-1269
    • Ferrari, B.C.1    Winsley, T.2    Gillings, M.3    Binnerup, S.4
  • 25
    • 2942623613 scopus 로고    scopus 로고
    • Molecular profil- ing of rhizosphere microbial communities associated with healthy and diseased black spruce (Picea mariana) seedlings grown in a nursery
    • Filion MR, Hamelin C, Bernier L, St-Arnaud M. Molecular profil- ing of rhizosphere microbial communities associated with healthy and diseased black spruce (Picea mariana) seedlings grown in a nursery. Appl Environ Microbiol 2004;70:3541-3551.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3541-3551
    • Filion, M.R.1    Hamelin, C.2    Bernier, L.3    St-Arnaud, M.4
  • 26
    • 0041804076 scopus 로고    scopus 로고
    • Characterisation of Lysobacter enzymogenes (Christensen and Cook 1978) strain 3.1T8, a powerful antagonist of fungal diseases of cucumber
    • Folman LB, Postma J, Van Veen JA. Characterisation of Lysobacter enzymogenes (Christensen and Cook 1978) strain 3.1T8, a powerful antagonist of fungal diseases of cucumber. Microbiol Res 2003;158:109.
    • (2003) Microbiol Res , vol.158 , pp. 109
    • Folman, L.B.1    Postma, J.2    Van Veen, J.A.3
  • 27
    • 55849095838 scopus 로고    scopus 로고
    • Acanthopleuribacterpedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., . Acanthopleuribacterales, ord. nov., Holophagaceae fam. nov., Holophagales or. nov. and Holophagae classis nov. in the phylum ‘Acidobacteria’
    • Fukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S. Acanthopleuribacterpedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., . Acanthopleuribacterales, ord. nov., Holophagaceae fam. nov., Holophagales or. nov. and Holophagae classis nov. in the phylum ‘Acidobacteria’. Int J Syst Evol Microbiol 2008;58:2597-2601.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2597-2601
    • Fukunaga, Y.1    Kurahashi, M.2    Yanagi, K.3    Yokota, A.4    Harayama, S.5
  • 28
    • 0141481267 scopus 로고    scopus 로고
    • History of the ADP/ATP-translocase-encoding gene, a parasitism gene transferred from Chlamydiales ancestor to plants 1 billion years ago
    • Greub G, Raoult D. History of the ADP/ATP-translocase-encoding gene, a parasitism gene transferred from Chlamydiales ancestor to plants 1 billion years ago. Appl Environ Microbiol 2003;69:5530-5535.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5530-5535
    • Greub, G.1    Raoult, D.2
  • 29
    • 34547910719 scopus 로고    scopus 로고
    • Phylogeny and shared conserved inserts in proteins provide evidence that Verrucomicrobia are the closest known free-living relatives of Chlamydiae
    • Griffiths E, Gupta RS. Phylogeny and shared conserved inserts in proteins provide evidence that Verrucomicrobia are the closest known free-living relatives of Chlamydiae. Microbiology 2007;153:2648-2654.
    • (2007) Microbiology , vol.153 , pp. 2648-2654
    • Griffiths, E.1    Gupta, R.S.2
  • 30
    • 1542366983 scopus 로고    scopus 로고
    • Bacterial response to siderophore and quorum- sensing chemical signals in the seawater microbial community
    • Guan LL, Kamino K. Bacterial response to siderophore and quorum- sensing chemical signals in the seawater microbial community. BMC Microbiol 2001;1:27.
    • (2001) BMC Microbiol , vol.1 , pp. 27
    • Guan, L.L.1    Kamino, K.2
  • 31
    • 21044444480 scopus 로고    scopus 로고
    • Isolation of novel bacteria and actinomycetes using soil-extract agar medium
    • Hamaki T, Suzuki M, Fudou R, Jojima Y, Kajiura T, et al. Isolation of novel bacteria and actinomycetes using soil-extract agar medium. J Biosci Bioeng 2005;99:485-492.
    • (2005) J Biosci Bioeng , vol.99 , pp. 485-492
    • Hamaki, T.1    Suzuki, M.2    Fudou, R.3    Jojima, Y.4    Kajiura, T.5
  • 32
    • 44949148053 scopus 로고    scopus 로고
    • Bacterial diversity of Taxus rhizosphere: Culture-independent and culture-dependent approaches
    • Hao DC, Ge GB, Yang L. Bacterial diversity of Taxus rhizosphere: culture-independent and culture-dependent approaches. FEMS Micro- biol Lett 2008;284:204-212.
    • (2008) FEMS Micro- Biol Lett , vol.284 , pp. 204-212
    • Hao, D.C.1    Ge, G.B.2    Yang, L.3
  • 33
    • 0030778930 scopus 로고    scopus 로고
    • Verrucomicrobia div. nov., a new division of the bacteria containing three new species of Prosthecobacter
    • Hedlund BP, Gosink JJ, Staley JT. Verrucomicrobia div. nov., a new division of the bacteria containing three new species of Prosthecobacter. Antonie Van Leeuwenhoek 1997;72:29-38.
    • (1997) Antonie Van Leeuwenhoek , vol.72 , pp. 29-38
    • Hedlund, B.P.1    Gosink, J.J.2    Staley, J.T.3
  • 34
    • 81355149263 scopus 로고    scopus 로고
    • Life without a cell membrane: Challenging the specificity of bacte­rial endophytes within Bryopsis (Bryopsidales, Chlorophyta)
    • Hollants J, Decleyre H, Leliaert F, De Clerck O, Willems A. Life without a cell membrane: challenging the specificity of bacte­rial endophytes within Bryopsis (Bryopsidales, Chlorophyta). BMC Microbiol 2011;11:255.
    • (2011) BMC Microbiol , vol.11 , pp. 255
    • Hollants, J.1    Decleyre, H.2    Leliaert, F.3    De Clerck, O.4    Willems, A.5
  • 35
    • 53849114721 scopus 로고    scopus 로고
    • Chlamydiae as symbionts in Eukaryotes
    • Horn M. Chlamydiae as symbionts in Eukaryotes. Annu Rev Microbiol 2008;62:113-131.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 113-131
    • Horn, M.1
  • 36
    • 2442636907 scopus 로고    scopus 로고
    • Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense
    • Idris R, Trifonova R, Puschenreiter M, Wenzel WW, Sessitsch A. Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense. Appl Environ Microbiol 2004;70:2667-2677.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2667-2677
    • Idris, R.1    Trifonova, R.2    Puschenreiter, M.3    Wenzel, W.W.4    Sessitsch, A.5
  • 38
    • 22144476571 scopus 로고    scopus 로고
    • Supres- sion of damping-off disease in host plants by the rhizoplane bacterium Lysobacter sp. strain SB-K88 is linked to plant colonization and antibiosis against soilborne Peronosporomycetes
    • Islam MT, Hashidoko Y, Deora A, Ito T, Tahara S. Supres- sion of damping-off disease in host plants by the rhizoplane bacterium Lysobacter sp. strain SB-K88 is linked to plant colonization and antibiosis against soilborne Peronosporomycetes. Appl Environ Microbiol 2005;71:3786-3796.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3786-3796
    • Islam, M.T.1    Hashidoko, Y.2    Deora, A.3    Ito, T.4    Tahara, S.5
  • 39
    • 33644952722 scopus 로고    scopus 로고
    • Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • Janssen PH. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol 2006;72:1719-1728.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1719-1728
    • Janssen, P.H.1
  • 40
    • 0030613344 scopus 로고    scopus 로고
    • Novel anaero­bic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil
    • Janssen PH, Schuhmann A, MOrschell E, Rainey F. Novel anaero­bic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl Environ Microbiol 1997;63:1382-1388.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1382-1388
    • Janssen, P.H.1    Schuhmann, A.2    Morschell, E.3    Rainey, F.4
  • 41
    • 0036250036 scopus 로고    scopus 로고
    • Improved culturability of soil bacteria and isolation in pure cul- ture of novel members of the divisions Acidobacteria, Actinobac- teria, Proteobacteria, and Verrucomicrobia
    • Janssen PH, Yates PS, Grinton BE, Taylor PM, Sait M. Improved culturability of soil bacteria and isolation in pure cul- ture of novel members of the divisions Acidobacteria, Actinobac- teria, Proteobacteria, and Verrucomicrobia. Appl Environ Microbiol 2002;68:2391-2396.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2391-2396
    • Janssen, P.H.1    Yates, P.S.2    Grinton, B.E.3    Taylor, P.M.4    Sait, M.5
  • 42
    • 63349105158 scopus 로고    scopus 로고
    • A comprehensive survey of soil acidobacterial diversity using pyrose-quencing and clone library analyses
    • Jones RT, Robeson MS, Lauber CL, Hamady M, Knight R, Fierer N. A comprehensive survey of soil acidobacterial diversity using pyrose-quencing and clone library analyses. ISME J 2009;3:442-453.
    • (2009) ISME J , vol.3 , pp. 442-453
    • Jones, R.T.1    Robeson, M.S.2    Lauber, C.L.3    Hamady, M.4    Knight, R.5    Fierer, N.6
  • 44
    • 0037052320 scopus 로고    scopus 로고
    • Isolating “uncultivable” microor- ganisms in pure culture in a simulated natural environment
    • Kaeberlein T, Lewis K, Epstein SS. Isolating “uncultivable” microor- ganisms in pure culture in a simulated natural environment. Science 2002;296:1127-1129.
    • (2002) Science , vol.296 , pp. 1127-1129
    • Kaeberlein, T.1    Lewis, K.2    Epstein, S.S.3
  • 45
    • 49949110962 scopus 로고    scopus 로고
    • Cultivation of uncultured fastidious microbes
    • Kamagata Y, Tamaki H. Cultivation of uncultured fastidious microbes. Microbes Environ 2005;20:85-91.
    • (2005) Microbes Environ , vol.20 , pp. 85-91
    • Kamagata, Y.1    Tamaki, H.2
  • 46
    • 34248595719 scopus 로고    scopus 로고
    • Collimonas fungivo- rans, an unpredicted in vitro but efficient in vivo biocontrol agent for the suppression of tomato foot and root rot
    • Kamilova F, Leveau JHJ, Lugtenberg B. Collimonas fungivo- rans, an unpredicted in vitro but efficient in vivo biocontrol agent for the suppression of tomato foot and root rot. Environ Microbiol 2007;9:1597-1603.
    • (2007) Environ Microbiol , vol.9 , pp. 1597-1603
    • Kamilova, F.1    Leveau, J.H.J.2    Lugtenberg, B.3
  • 47
    • 60749121732 scopus 로고    scopus 로고
    • Phylogenetic diversity of Acidobacteria in a former agricultural soil
    • Kielak A, Pijl AS, Van Veen JA, Kowalchuk GA. Phylogenetic diversity of Acidobacteria in a former agricultural soil. ISME J 2009;3:378-382.
    • (2009) ISME J , vol.3 , pp. 378-382
    • Kielak, A.1    Pijl, A.S.2    Van Veen, J.A.3    Kowalchuk, G.A.4
  • 48
    • 0035013870 scopus 로고    scopus 로고
    • Root mucilage from pea and its utilization by rhizosphere bacteria as a sole carbon source
    • Knee EM, Gong F-C, Gao M, Teplitski M, Jones AR, et al. Root mucilage from pea and its utilization by rhizosphere bacteria as a sole carbon source. Mol Plant Microbe Interact 2001;14:775-784.
    • (2001) Mol Plant Microbe Interact , vol.14 , pp. 775-784
    • Knee, E.M.1    Gong, F.-C.2    Gao, M.3    Teplitski, M.4    Jones, A.R.5
  • 49
    • 0036203424 scopus 로고    scopus 로고
    • Comparison of soil bacterial communities in rhizo- spheres of three plant species and the interspaces in an arid grassland
    • Kuske CR, Ticknor LO, Miler ME, Dunbar JM, Davis JA, Barns SM, Belnap J. Comparison of soil bacterial communities in rhizo- spheres of three plant species and the interspaces in an arid grassland. Appl Environ Microbiol 2002;68:1854-1863.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1854-1863
    • Kuske, C.R.1    Ticknor, L.O.2    Miler, M.E.3    Dunbar, J.M.4    Davis, J.A.5    Barns, S.M.6    Belnap, J.7
  • 50
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing- based assessment of soil pH as a predictor of soil bacterial com­munity structure at the continental scale
    • Lauber CL, Hamady M, Knight R, Fierer N. Pyrosequencing- based assessment of soil pH as a predictor of soil bacterial com­munity structure at the continental scale. Appl Environ Microbiol 2009;75:5111-5120.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 51
    • 47349088053 scopus 로고    scopus 로고
    • Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil
    • Lee S-H, Ka J-O, Cho J-C. Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil. FEMS Micro­biol Lett 2008;285:263-269.
    • (2008) FEMS Micro­biol Lett , vol.285 , pp. 263-269
    • Lee, S.-H.1    Ka, J.-O.2    Cho, J.-C.3
  • 52
    • 61949150134 scopus 로고    scopus 로고
    • Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes
    • Lee K-C, Webb RI, Janssen PH, Sangwan P, Romeo T, et al. Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes. BMC Microbiol 2009;9:5.
    • (2009) BMC Microbiol , vol.9 , pp. 5
    • Lee, K.-C.1    Webb, R.I.2    Janssen, P.H.3    Sangwan, P.4    Romeo, T.5
  • 53
    • 77649088016 scopus 로고    scopus 로고
    • The bacterial genus Collimonas: Mycophagy, weathering and other adaptive solutions to life in oligotrophic soil conditions
    • Leveau JHJ, Uroz S, De Boer W. The bacterial genus Collimonas: mycophagy, weathering and other adaptive solutions to life in oligotrophic soil conditions. Environ Microbiol 2009;12:281-292.
    • (2009) Environ Microbiol , vol.12 , pp. 281-292
    • Leveau, J.H.J.1    Uroz, S.2    De Boer, W.3
  • 54
    • 77749330122 scopus 로고    scopus 로고
    • A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria reveals a lineage-specific distribution in a clay fraction
    • Liles MR, Turkmen O, Manske BF, Zhang M, Rouillard J-M, et al. A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria reveals a lineage-specific distribution in a clay fraction. Soil Biol Biochem 2010;42:739-747.
    • (2010) Soil Biol Biochem , vol.42 , pp. 739-747
    • Liles, M.R.1    Turkmen, O.2    Manske, B.F.3    Zhang, M.4    Rouillard, J.-M.5
  • 55
    • 0031789346 scopus 로고    scopus 로고
    • Isolation and phylogenetic analysis of aerobic copiotrophic ultramicrobacteria from urban soil
    • Lizuka T, Yamanaka S, Nishiyama T, Hiraishi A. Isolation and phylogenetic analysis of aerobic copiotrophic ultramicrobacteria from urban soil. J Gen Appl Microbiol 1998;44:75-84.
    • (1998) J Gen Appl Microbiol , vol.44 , pp. 75-84
    • Lizuka, T.1    Yamanaka, S.2    Nishiyama, T.3    Hiraishi, A.4
  • 56
    • 0033832931 scopus 로고    scopus 로고
    • Novel bacterial diversity recovered from the rhizosphere of oilseed rape (Brassica napus) determined by the analysis of 16S ribosomal DNA
    • Macrae A, Rimmer DL, O’Donnell AG. Novel bacterial diversity recovered from the rhizosphere of oilseed rape (Brassica napus) determined by the analysis of 16S ribosomal DNA. Antonie Van Leeuwenhoek 2000;78:13-21.
    • (2000) Antonie Van Leeuwenhoek , vol.78 , pp. 13-21
    • Macrae, A.1    Rimmer, D.L.2    O’Donnell, A.G.3
  • 57
    • 48249125417 scopus 로고    scopus 로고
    • Chlamydiae has contributed at least 55 genes to plantae with predominantly plastid functions
    • Moustafa A, Reyes-Prieto A, Bhattarcharya D. Chlamydiae has contributed at least 55 genes to plantae with predominantly plastid functions. PloS ONE 2008;5:e2205.
    • (2008) Plos ONE , vol.e2205 , pp. 5
    • Moustafa, A.1    Reyes-Prieto, A.2    Bhattarcharya, D.3
  • 58
    • 77951667084 scopus 로고    scopus 로고
    • Bacterial communities associated with the rhizosphere of pioneer plants (Bahlia xylopoda and Viguiera linearis) growing on heavy metals-contaminated soils
    • Navarro-Noya YE, Jan-Roblero J, del Carmen G-CM, HernAndez-Gama R, HernAndez-Rodriguez C. Bacterial communities associated with the rhizosphere of pioneer plants (Bahlia xylopoda and Viguiera linearis) growing on heavy metals-contaminated soils. Antonie Van Leeuwenhoek 2010;97:335-349.
    • (2010) Antonie Van Leeuwenhoek , vol.97 , pp. 335-349
    • Navarro-Noya, Y.E.1    Jan-Roblero, J.2    Del Carmen, G.-C.3    Hernandez-Gama, R.4    Hernandez-Rodriguez, C.5
  • 59
    • 78650187493 scopus 로고    scopus 로고
    • Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest
    • Nemergut DR, Cleveland CC, Wieder WR, Washenberger CL, Townsend AR. Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest. Soil Biol Biochem 2010;42:2153-2160.
    • (2010) Soil Biol Biochem , vol.42 , pp. 2153-2160
    • Nemergut, D.R.1    Cleveland, C.C.2    Wieder, W.R.3    Washenberger, C.L.4    Townsend, A.R.5
  • 62
    • 77957862191 scopus 로고    scopus 로고
    • Cultivation of hitherto-uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum L.) rhizosphere
    • Nunes da Rocha U, Andreote FD, De Azevedo JL, Van Elsas JD, Van Overbeek LS. Cultivation of hitherto-uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum L.) rhizosphere. J Soils Sediments 2010a;10:326-339.
    • (2010) J Soils Sediments , vol.10 , pp. 326-339
    • Nunes da Rocha, U.1    Andreote, F.D.2    De Azevedo, J.L.3    Van Elsas, J.D.4    Van Overbeek, L.S.5
  • 63
    • 77957863316 scopus 로고    scopus 로고
    • Real-time PCR detection of Holophagae (Acidobacteria) and Verrucomicrobia subdivision 1 groups in bulk and leek (Allium porrum) rhizosphere soils
    • Nunes da Rocha U, Van Elsas JD, Van Overbeek LS. Real-time PCR detection of Holophagae (Acidobacteria) and Verrucomicrobia subdivision 1 groups in bulk and leek (Allium porrum) rhizosphere soils. J. Microbiol. Meth. 2010b;83:141-148.
    • (2010) J. Microbiol. Meth , vol.83 , pp. 141-148
    • Nunes da Rocha, U.1    Van Elsas, J.D.2    Van Overbeek, L.S.3
  • 64
    • 80054119408 scopus 로고    scopus 로고
    • Verrucomicro­bia subdivision 1 strains display a difference in colonization in the colonization of the leek (Allium porrum) rhizosphere
    • Nunes da Rocha U, Van Elsas JD, van Overbeek LS. Verrucomicro­bia subdivision 1 strains display a difference in colonization in the colonization of the leek (Allium porrum) rhizosphere. FEMS Micro- biol Ecol 2011;78:297-303.
    • (2011) FEMS Micro- Biol Ecol , vol.78 , pp. 297-303
    • Nunes da Rocha, U.1    Van Elsas, J.D.2    Van Overbeek, L.S.3
  • 66
    • 80052637001 scopus 로고    scopus 로고
    • Polyketide synthase pathways identified from a metagenomic library are derived from soil Acidobacteria
    • Parsley LC, Linneman J, Goode AM, Becklund K, George I, et al. Polyketide synthase pathways identified from a metagenomic library are derived from soil Acidobacteria. FEMS Microbiol Ecol 2011;78:176-187.
    • (2011) FEMS Microbiol Ecol , vol.78 , pp. 176-187
    • Parsley, L.C.1    Linneman, J.2    Goode, A.M.3    Becklund, K.4    George, I.5
  • 67
    • 71849111667 scopus 로고    scopus 로고
    • Soil properties are key determinants for the development of exudate gradients in a rhizosphere simulation model
    • Raynoud X. Soil properties are key determinants for the development of exudate gradients in a rhizosphere simulation model. Soil Biol Biochem 2010;42:210-219.
    • (2010) Soil Biol Biochem , vol.42 , pp. 210-219
    • Raynoud, X.1
  • 68
    • 67549107261 scopus 로고    scopus 로고
    • Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana
    • Rosenberg K, Bertaux J, Krome K, Hartmann A, Scheu S, et al. Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana. ISME J 2009;3:675-684.
    • (2009) ISME J , vol.3 , pp. 675-684
    • Rosenberg, K.1    Bertaux, J.2    Krome, K.3    Hartmann, A.4    Scheu, S.5
  • 69
    • 77956996314 scopus 로고    scopus 로고
    • Soil bacterial and fungal communities across a pH gradient in an arable soil
    • Rousk J, BAAth E, Brookes PC, Lauber CL, Lozupone C, et al. Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J 2010;4:1340-1351.
    • (2010) ISME J , vol.4 , pp. 1340-1351
    • Rousk, J.1    Baath, E.2    Brookes, P.C.3    Lauber, C.L.4    Lozupone, C.5
  • 70
    • 33644962444 scopus 로고    scopus 로고
    • Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobac- teria occurring in soil
    • Sait M, Davis KER, Janssen PH. Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobac- teria occurring in soil. Appl Environ Microbiol 2006;72:1852-1857.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1852-1857
    • Sait, M.1    Davis, K.E.R.2    Janssen, P.H.3
  • 71
    • 33745134693 scopus 로고    scopus 로고
    • Potential of a 16S rRNA-based taxonomic microaaray for analyzing the rhizopshere effects of maize on Agrobacterium spp. and bacterial communities
    • Sanguin H, Remenant B, Dechesne A, Thioulouse J, Vogel TM, et al. Potential of a 16S rRNA-based taxonomic microaaray for analyzing the rhizopshere effects of maize on Agrobacterium spp. and bacterial communities. Appl Environ Microbiol 2006;72:4302- 4312.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4302-4312
    • Sanguin, H.1    Remenant, B.2    Dechesne, A.3    Thioulouse, J.4    Vogel, T.M.5
  • 73
    • 75749127849 scopus 로고    scopus 로고
    • The compartmentalized bacteria of the Planctomycetes-Verrucomicrobia-Chlamydiae superphylum have membrane coat-like proteins
    • Santarella-Mellwig R, Franke J, Jaedicke A, Gorjanacz M, Bauer U, et al. The compartmentalized bacteria of the Planctomycetes-Verrucomicrobia-Chlamydiae superphylum have membrane coat-like proteins. PloS Biol 2010;8:e1000281.
    • (2010) Plos Biol , vol.8
    • Santarella-Mellwig, R.1    Franke, J.2    Jaedicke, A.3    Gorjanacz, M.4    Bauer, U.5
  • 74
    • 33749031836 scopus 로고    scopus 로고
    • Rubritalea marina gen. nov., sp. nov., a marine representative of the phylum ‘Verrucomicrobia’, isolated from a sponge (Porifera)
    • Scheuermayer M, Gulder TAM, Bringmann G, Hentschel U. Rubritalea marina gen. nov., sp. nov., a marine representative of the phylum ‘Verrucomicrobia’, isolated from a sponge (Porifera). Int J Syst Evol Microbiol 2006;56:2119-2124.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 2119-2124
    • Scheuermayer, M.1    Gulder, T.A.M.2    Bringmann, G.3    Hentschel, U.4
  • 75
    • 34547912014 scopus 로고    scopus 로고
    • The phylum Verrucomicro- bia: A phylogenetically heterogeneous bacterial group
    • Schlesner H, Jenkins C, Staley JT. The phylum Verrucomicro- bia: a phylogenetically heterogeneous bacterial group. Prokaryotes 2006;7:881-896.
    • (2006) Prokaryotes , vol.7 , pp. 881-896
    • Schlesner, H.1    Jenkins, C.2    Staley, J.T.3
  • 76
    • 78149471479 scopus 로고    scopus 로고
    • Isolation and partial characterization of bacterial strains on low organic carbon medium from soils fertilized with different organic amendments
    • Senechkin IV, Speksnijder AGCL, Semenov AM, Van Bruggen AHC, Van Overbeek LS. Isolation and partial characterization of bacterial strains on low organic carbon medium from soils fertilized with different organic amendments. Microb Ecol 2010;60:829-839.
    • (2010) Microb Ecol , vol.60 , pp. 829-839
    • Senechkin, I.V.1    Speksnijder, A.G.C.L.2    Semenov, A.M.3    Van Bruggen, A.H.C.4    Van Overbeek, L.S.5
  • 78
    • 41049117454 scopus 로고    scopus 로고
    • Endophytic bacte­rial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis
    • Sun L, Qiu F, Zhang X, Dai X, Ding X, et al. Endophytic bacte­rial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis. Microb Ecol 2008;55:415-424.
    • (2008) Microb Ecol , vol.55 , pp. 415-424
    • Sun, L.1    Qiu, F.2    Zhang, X.3    Dai, X.4    Ding, X.5
  • 79
    • 47749123542 scopus 로고    scopus 로고
    • Isolation of bacteria whose growth is dependent on high levels of CO2 and implications of their potential diversity
    • Ueda K, Tagami Y, Kamihara Y, Shiratori H, Takano H, et al. Isolation of bacteria whose growth is dependent on high levels of CO2 and implications of their potential diversity. Appl Environ Microbiol 2008;74:4535-4538.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 4535-4538
    • Ueda, K.1    Tagami, Y.2    Kamihara, Y.3    Shiratori, H.4    Takano, H.5
  • 80
    • 1942504388 scopus 로고    scopus 로고
    • The low-temperature-induced viable-but-nonculturable state affects the virulence of Ralstonia solanacearum biovar 2
    • Van Overbeek LS, Bergervoet JHW, Jacobs F, Van Elsas JD. The low-temperature-induced viable-but-nonculturable state affects the virulence of Ralstonia solanacearum biovar 2. Phytopathology 2004;94:463-469.
    • (2004) Phytopathology , vol.94 , pp. 463-469
    • Van Overbeek, L.S.1    Bergervoet, J.H.W.2    Jacobs, F.3    Van Elsas, J.D.4
  • 81
    • 36749043174 scopus 로고    scopus 로고
    • MahE S, Ineson P, Staddon P, Ostle N, et al. Active root-inhabiting microbes identified by rapid incorpora- tion of plant-derived carbon into RNA
    • Vandenkoornhuyse P, MahE S, Ineson P, Staddon P, Ostle N, et al. Active root-inhabiting microbes identified by rapid incorpora- tion of plant-derived carbon into RNA. Proc Natl Acad Sci USA 2007;104:16970-16975.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 16970-16975
    • Vandenkoornhuyse, P.1
  • 82
    • 33744927902 scopus 로고    scopus 로고
    • The Planctomycetes, Verrucomicrobia, Chlamy- diae and sister phyla comprise a superphylum with biotechnological and medical relevance
    • Wagner M, Horn M. The Planctomycetes, Verrucomicrobia, Chlamy- diae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr Opin Biotechnol 2006;17:241-249.
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 241-249
    • Wagner, M.1    Horn, M.2
  • 83
    • 63849207489 scopus 로고    scopus 로고
    • Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils
    • Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, et al. Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol 2009;75:2046-2056.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2046-2056
    • Ward, N.L.1    Challacombe, J.F.2    Janssen, P.H.3    Henrissat, B.4    Coutinho, P.M.5
  • 85
    • 47249084286 scopus 로고    scopus 로고
    • Description of Persicirhabdus sediminis gen. nov., sp. Nov. Roseibacil­lus ishigakijmensis gen. nov. sp. Nov. Roseibacillus Ponti sp. nov. Roseibacillus persicicus sp. nov. Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum ‘Verrucomicrobia’, and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae
    • Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S, et al. Description of Persicirhabdus sediminis gen. nov., sp. Nov. Roseibacil­lus ishigakijmensis gen. nov. sp. Nov. Roseibacillus Ponti sp. nov. Roseibacillus persicicus sp. nov. Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum ‘Verrucomicrobia’, and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae. Int J Syst Evol Microbiol 2008;58:998-1007.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 998-1007
    • Yoon, J.1    Matsuo, Y.2    Adachi, K.3    Nozawa, M.4    Matsuda, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.