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Volumn 9, Issue 2, 2014, Pages

A unique epigenetic signature is associated with active DNA replication loci in human embryonic stem cells

Author keywords

CBP; Chromatin; DNA replication; Embryonic stem cells; Epigenetics; Histone acetyltransferase; Histone modifications; P300

Indexed keywords

BROXURIDINE; E1A ASSOCIATED P300 PROTEIN; GENOMIC DNA; HISTONE ACETYLTRANSFERASE; DNA; HISTONE;

EID: 84892599558     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.4161/epi.26870     Document Type: Article
Times cited : (19)

References (40)
  • 1
    • 77956879643 scopus 로고    scopus 로고
    • Evaluating genome-scale approaches to eukaryotic DNA replication
    • PMID:20811343
    • Gilbert DM. Evaluating genome-scale approaches to eukaryotic DNA replication. Nat Rev Genet 2010; 11:673-84; PMID:20811343; http://dx.doi. org/10.1038/nrg2830
    • (2010) Nat Rev Genet , vol.11 , pp. 673-684
    • Gilbert, D.M.1
  • 2
    • 14544277626 scopus 로고    scopus 로고
    • Origin recognition and the chromosome cycle
    • PMID:15680967
    • Stillman B. Origin recognition and the chromosome cycle. FEBS Lett 2005; 579:877-84; PMID:15680967; http://dx.doi.org/10.1016/j. febslet.2004.12.011
    • (2005) FEBS Lett , vol.579 , pp. 877-884
    • Stillman, B.1
  • 3
    • 70549085855 scopus 로고    scopus 로고
    • Eukaryotic DNA replication control: Lock and load, then fire
    • PMID:19767190
    • Remus D, Diffley JF. Eukaryotic DNA replication control: lock and load, then fire. Curr Opin Cell Biol 2009; 21:771-7; PMID:19767190; http://dx.doi. org/10.1016/j.ceb.2009.08.002
    • (2009) Curr Opin Cell Biol , vol.21 , pp. 771-777
    • Remus, D.1    Diffley, J.F.2
  • 4
    • 77950962157 scopus 로고    scopus 로고
    • Conserved nucleosome positioning defines replication origins
    • PMID:20351051
    • Eaton ML, Galani K, Kang S, Bell SP, MacAlpine DM. Conserved nucleosome positioning defines replication origins. Genes Dev 2010; 24:748-53; PMID:20351051; http://dx.doi.org/10.1101/ gad.1913210
    • (2010) Genes Dev , vol.24 , pp. 748-753
    • Eaton, M.L.1    Galani, K.2    Kang, S.3    Bell, S.P.4    McAlpine, D.M.5
  • 5
    • 84864690009 scopus 로고    scopus 로고
    • Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs
    • PMID:22751019
    • Besnard E, Babled A, Lapasset L, Milhavet O, Parrinello H, Dantec C, Marin JM, Lemaitre JM. Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs. Nat Struct Mol Biol 2012; 19:837-44; PMID:22751019; http://dx.doi. org/10.1038/nsmb.2339
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 837-844
    • Besnard, E.1    Babled, A.2    Lapasset, L.3    Milhavet, O.4    Parrinello, H.5    Dantec, C.6    Marin, J.M.7    Lemaitre, J.M.8
  • 6
    • 0035430416 scopus 로고    scopus 로고
    • DNA replication origins: From sequence specificity to epigenetics
    • PMID:11483989
    • Méchali M. DNA replication origins: from sequence specificity to epigenetics. Nat Rev Genet 2001; 2:640-5; PMID:11483989; http://dx.doi. org/10.1038/35084598
    • (2001) Nat Rev Genet , vol.2 , pp. 640-645
    • Méchali, M.1
  • 7
    • 73649089696 scopus 로고    scopus 로고
    • HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin
    • PMID:20129055
    • Miotto B, Struhl K. HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin. Mol Cell 2010; 37:57-66; PMID:20129055; http://dx.doi.org/10.1016/j. molcel.2009.12.012
    • (2010) Mol Cell , vol.37 , pp. 57-66
    • Miotto, B.1    Struhl, K.2
  • 8
    • 3142760095 scopus 로고    scopus 로고
    • The origin recognition complex links replication, sister chromatid cohesion and transcriptional silencing in Saccharomyces cerevisiae
    • PMID:15238513
    • Suter B, Tong A, Chang M, Yu L, Brown GW, Boone C, Rine J. The origin recognition complex links replication, sister chromatid cohesion and transcriptional silencing in Saccharomyces cerevisiae. Genetics 2004; 167:579-91; PMID:15238513; http://dx.doi. org/10.1534/genetics.103.024851
    • (2004) Genetics , vol.167 , pp. 579-591
    • Suter, B.1    Tong, A.2    Chang, M.3    Yu, L.4    Brown, G.W.5    Boone, C.6    Rine, J.7
  • 10
    • 33846796258 scopus 로고    scopus 로고
    • Rtt109 acetylates histone H3 lysine 56 and functions in DNA replication
    • PMID:17272723
    • Han J, Zhou H, Horazdovsky B, Zhang K, Xu RM, Zhang Z. Rtt109 acetylates histone H3 lysine 56 and functions in DNA replication. Science 2007; 315:653-5; PMID:17272723; http://dx.doi. org/10.1126/science.1133234
    • (2007) Science , vol.315 , pp. 653-655
    • Han, J.1    Zhou, H.2    Horazdovsky, B.3    Zhang, K.4    Xu, R.M.5    Zhang, Z.6
  • 11
    • 65549113750 scopus 로고    scopus 로고
    • CBP/ p300-mediated acetylation of histone H3 on lysine 56
    • PMID:19270680
    • Das C, Lucia MS, Hansen KC, Tyler JK. CBP/ p300-mediated acetylation of histone H3 on lysine 56. Nature 2009; 459:113-7; PMID:19270680; http://dx.doi.org/10.1038/nature07861
    • (2009) Nature , vol.459 , pp. 113-117
    • Das, C.1    Lucia, M.S.2    Hansen, K.C.3    Tyler, J.K.4
  • 12
    • 0036863542 scopus 로고    scopus 로고
    • Histone acetylation regulates the time of replication origin firing
    • PMID:12453428
    • Vogelauer M, Rubbi L, Lucas I, Brewer BJ, Grunstein M. Histone acetylation regulates the time of replication origin firing. Mol Cell 2002; 10:1223-33; PMID:12453428; http://dx.doi.org/10.1016/ S1097-2765(02)00702-5
    • (2002) Mol Cell , vol.10 , pp. 1223-1233
    • Vogelauer, M.1    Rubbi, L.2    Lucas, I.3    Brewer, B.J.4    Grunstein, M.5
  • 13
    • 84870529834 scopus 로고    scopus 로고
    • The role of PR-Set7 in replication licensing depends on Suv4-20h
    • PMID:23152447
    • Beck DB, Burton A, Oda H, Ziegler-Birling C, Torres-Padilla ME, Reinberg D. The role of PR-Set7 in replication licensing depends on Suv4-20h. Genes Dev 2012; 26:2580-9; PMID:23152447; http:// dx.doi.org/10.1101/gad.195636.112
    • (2012) Genes Dev , vol.26 , pp. 2580-2589
    • Beck, D.B.1    Burton, A.2    Oda, H.3    Ziegler-Birling, C.4    Torres-Padilla, M.E.5    Reinberg, D.6
  • 14
    • 84862818911 scopus 로고    scopus 로고
    • The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome
    • PMID:22398447
    • Kuo AJ, Song J, Cheung P, Ishibe-Murakami S, Yamazoe S, Chen JK, Patel DJ, Gozani O. The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome. Nature 2012; 484:115-9; PMID:22398447; http://dx.doi. org/10.1038/nature10956
    • (2012) Nature , vol.484 , pp. 115-119
    • Kuo, A.J.1    Song, J.2    Cheung, P.3    Ishibe-Murakami, S.4    Yamazoe, S.5    Chen, J.K.6    Patel, D.J.7    Gozani, O.8
  • 19
    • 84878282421 scopus 로고    scopus 로고
    • Epigenomic analysis of multilineage differentiation of human embryonic stem cells
    • PMID:23664764
    • Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell 2013; 153:1134-48; PMID:23664764; http://dx.doi. org/10.1016/j.cell.2013.04.022
    • (2013) Cell , vol.153 , pp. 1134-1148
    • Xie, W.1    Schultz, M.D.2    Lister, R.3    Hou, Z.4    Rajagopal, N.5    Ray, P.6    Whitaker, J.W.7    Tian, S.8    Hawkins, R.D.9    Leung, D.10
  • 20
    • 70349871718 scopus 로고    scopus 로고
    • CEAS: Cis-regulatory element annotation system
    • PMID:19689956
    • Shin H, Liu T, Manrai AK, Liu XS. CEAS: cis-regulatory element annotation system. Bioinformatics 2009; 25:2605-6; PMID:19689956; http://dx.doi. org/10.1093/bioinformatics/btp479
    • (2009) Bioinformatics , vol.25 , pp. 2605-2606
    • Shin, H.1    Liu, T.2    Manrai, A.K.3    Liu, X.S.4
  • 21
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: A database and an electronic journal of repetitive elements
    • PMID:10973072
    • Jurka J. Repbase update: a database and an electronic journal of repetitive elements. Trends Genet 2000; 16:418-20; PMID:10973072; http://dx.doi. org/10.1016/S0168-9525(00)02093-X
    • (2000) Trends Genet , vol.16 , pp. 418-420
    • Jurka, J.1
  • 22
    • 65249153186 scopus 로고    scopus 로고
    • Every microsatellite is different: Intrinsic DNA features dictate mutagenesis of common microsatellites present in the human genome
    • PMID:19306292
    • Eckert KA, Hile SE. Every microsatellite is different: Intrinsic DNA features dictate mutagenesis of common microsatellites present in the human genome. Mol Carcinog 2009; 48:379-88; PMID:19306292; http://dx.doi.org/10.1002/mc.20499
    • (2009) Mol Carcinog , vol.48 , pp. 379-388
    • Eckert, K.A.1    Hile, S.E.2
  • 23
    • 0036156599 scopus 로고    scopus 로고
    • Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: Disease-related genes in timing-switch regions
    • PMID:11772995
    • Watanabe Y, Fujiyama A, Ichiba Y, Hattori M, Yada T, Sakaki Y, Ikemura T. Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: disease-related genes in timing-switch regions. Hum Mol Genet 2002; 11:13-21; PMID:11772995; http://dx.doi.org/10.1093/ hmg/11.1.13
    • (2002) Hum Mol Genet , vol.11 , pp. 13-21
    • Watanabe, Y.1    Fujiyama, A.2    Ichiba, Y.3    Hattori, M.4    Yada, T.5    Sakaki, Y.6    Ikemura, T.7
  • 27
    • 79960972788 scopus 로고    scopus 로고
    • Ion channels and transporters in cancer. Ion channels and cell proliferation in cancer
    • PMID:21430288
    • Becchetti A. Ion channels and transporters in cancer. Ion channels and cell proliferation in cancer. Am J Physiol Cell Physiol 2011; 301:C255-65; PMID:21430288; http://dx.doi.org/10.1152/ ajpcell.00047.2011
    • (2011) Am J Physiol Cell Physiol , vol.301
    • Becchetti, A.1
  • 28
    • 84875446405 scopus 로고    scopus 로고
    • Ion channels and transporters in cancer: Pathophysiology, regulation, and clinical potential
    • PMID:23302229
    • Pedersen SF, Stock C. Ion channels and transporters in cancer: pathophysiology, regulation, and clinical potential. Cancer Res 2013; 73:1658-61; PMID:23302229; http://dx.doi.org/10.1158/0008-5472.CAN-12-4188
    • (2013) Cancer Res , vol.73 , pp. 1658-1661
    • Pedersen, S.F.1    Stock, C.2
  • 29
    • 78149281634 scopus 로고    scopus 로고
    • The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells
    • PMID:20953199
    • Tardat M, Brustel J, Kirsh O, Lefevbre C, Callanan M, Sardet C, Julien E. The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells. Nat Cell Biol 2010; 12:1086-93; PMID:20953199; http://dx.doi.org/10.1038/ ncb2113
    • (2010) Nat Cell Biol , vol.12 , pp. 1086-1093
    • Tardat, M.1    Brustel, J.2    Kirsh, O.3    Lefevbre, C.4    Callanan, M.5    Sardet, C.6    Julien, E.7
  • 30
    • 50149094330 scopus 로고    scopus 로고
    • Adenovirus small e1a alters global patterns of histone modification
    • PMID:18719283
    • Horwitz GA, Zhang K, McBrian MA, Grunstein M, Kurdistani SK, Berk AJ. Adenovirus small e1a alters global patterns of histone modification. Science 2008; 321:1084-5; PMID:18719283; http://dx.doi. org/10.1126/science.1155544
    • (2008) Science , vol.321 , pp. 1084-1085
    • Horwitz, G.A.1    Zhang, K.2    McBrian, M.A.3    Grunstein, M.4    Kurdistani, S.K.5    Berk, A.J.6
  • 32
    • 80052523848 scopus 로고    scopus 로고
    • Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
    • PMID:21750104
    • Cayrou C, Coulombe P, Vigneron A, Stanojcic S, Ganier O, Peiffer I, Rivals E, Puy A, Laurent-Chabalier S, Desprat R, et al. Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features. Genome Res 2011; 21:1438-49; PMID:21750104; http://dx.doi.org/10.1101/ gr.121830.111
    • (2011) Genome Res , vol.21 , pp. 1438-1449
    • Cayrou, C.1    Coulombe, P.2    Vigneron, A.3    Stanojcic, S.4    Ganier, O.5    Peiffer, I.6    Rivals, E.7    Puy, A.8    Laurent-Chabalier, S.9    Desprat, R.10
  • 33
    • 84862777220 scopus 로고    scopus 로고
    • Histone H3 lysine 56 methylation regulates DNA replication through its interaction with PCNA
    • PMID:22387026
    • Yu Y, Song C, Zhang Q, DiMaggio PA, Garcia BA, York A, Carey MF, Grunstein M. Histone H3 lysine 56 methylation regulates DNA replication through its interaction with PCNA. Mol Cell 2012; 46:7-17; PMID:22387026; http://dx.doi.org/10.1016/j. molcel.2012.01.019
    • (2012) Mol Cell , vol.46 , pp. 7-17
    • Yu, Y.1    Song, C.2    Zhang, Q.3    DiMaggio, P.A.4    Garcia, B.A.5    York, A.6    Carey, M.F.7    Grunstein, M.8
  • 34
    • 0034234237 scopus 로고    scopus 로고
    • CBP/p300 in cell growth, transformation, and development
    • PMID:10887150
    • Goodman RH, Smolik S. CBP/p300 in cell growth, transformation, and development. Genes Dev 2000; 14:1553-77; PMID:10887150
    • (2000) Genes Dev , vol.14 , pp. 1553-1577
    • Goodman, R.H.1    Smolik, S.2
  • 35
    • 66449123586 scopus 로고    scopus 로고
    • Acetylation/deacetylation modulates the stability of DNA replication licensing factor Cdt1
    • PMID:19276081
    • Glozak MA, Seto E. Acetylation/deacetylation modulates the stability of DNA replication licensing factor Cdt1. J Biol Chem 2009; 284:11446-53; PMID:19276081; http://dx.doi.org/10.1074/jbc. M809394200
    • (2009) J Biol Chem , vol.284 , pp. 11446-11453
    • Glozak, M.A.1    Seto, E.2
  • 36
    • 2442431498 scopus 로고    scopus 로고
    • The post-translational modifications of proliferating cell nuclear antigen: Acetylation, not phosphorylation, plays an important role in the regulation of its function
    • PMID:14988403
    • Naryzhny SN, Lee H. The post-translational modifications of proliferating cell nuclear antigen: acetylation, not phosphorylation, plays an important role in the regulation of its function. J Biol Chem 2004; 279:20194-9; PMID:14988403; http://dx.doi. org/10.1074/jbc.M312850200
    • (2004) J Biol Chem , vol.279 , pp. 20194-20199
    • Naryzhny, S.N.1    Lee, H.2
  • 37
    • 44149084708 scopus 로고    scopus 로고
    • DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin
    • PMID:18443145
    • Goren A, Tabib A, Hecht M, Cedar H. DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin. Genes Dev 2008; 22:1319-24; PMID:18443145; http:// dx.doi.org/10.1101/gad.468308
    • (2008) Genes Dev , vol.22 , pp. 1319-1324
    • Goren, A.1    Tabib, A.2    Hecht, M.3    Cedar, H.4
  • 38
    • 0034677730 scopus 로고    scopus 로고
    • Start sites of bidirectional DNA synthesis at the human lamin B2 origin
    • PMID:10720330
    • Abdurashidova G, Deganuto M, Klima R, Riva S, Biamonti G, Giacca M, Falaschi A. Start sites of bidirectional DNA synthesis at the human lamin B2 origin. Science 2000; 287:2023-6; PMID:10720330; http://dx.doi.org/10.1126/science.287.5460.2023
    • (2000) Science , vol.287 , pp. 2023-2026
    • Abdurashidova, G.1    Deganuto, M.2    Klima, R.3    Riva, S.4    Biamonti, G.5    Giacca, M.6    Falaschi, A.7
  • 40
    • 34248644291 scopus 로고    scopus 로고
    • Profiling of DNA replication timing in unsynchronized cell populations
    • PMID:17487209
    • Azuara V. Profiling of DNA replication timing in unsynchronized cell populations. Nat Protoc 2006; 1:2171-7; PMID:17487209; http://dx.doi. org/10.1038/nprot.2006.353
    • (2006) Nat Protoc , vol.1 , pp. 2171-2177
    • Azuara, V.1


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