Identification of novel markers that demarcate the nucleolus during severe stress and chemotherapeutic treatment

PLoS ONE

Volumn 8, Issue 11, 2013, Pages

  Su, Haitong ^a   Kodiha, Mohamed ^a   Lee, Sunghoon ^a   Stochaj, Ursula ^a  

^a MCGILL UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

5,6 DICHLOROBENZIMIDAZOLE RIBOSIDE; CELL PROTEIN; CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN; DACTINOMYCIN; HUR PROTEIN; NUCLEOLIN; NUCLEOPHOSMIN;

ARTICLE; CELL STRAIN MCF 7; CELL STRESS; CONTROLLED STUDY; FLUORESCENCE MICROSCOPY; HEAT STRESS; HELA CELL; NUCLEOLUS; OXIDATIVE STRESS; PROTEIN LOCALIZATION; RNA SYNTHESIS;

CELL LINE, TUMOR; CELL NUCLEOLUS; DACTINOMYCIN; HELA CELLS; HUMANS; NUCLEAR PROTEINS; NUCLEOLUS ORGANIZER REGION; PHOSPHOPROTEINS; RNA-BINDING PROTEINS;

EID: 84892388988     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0080237     Document Type: Article

References (52)

1. Raska I, Shaw PJ, Cmarko D (2006) New insights into nucleolar architecture and activity. International Review of Cytology 255: 177-235.
2. Hernandez-Verdun D, Roussel P, Thiry M, Sirri V, Lafontaine DLJ (2010) The nucleolus: structure/function relationship in RNA metabolism. Wiley Interdisciplinary Reviews: RNA 1: 415-431.
3. Cisterna B, Biggiogera M (2010) Ribosome Biogenesis: From Structure to Dynamics. International Review of Cell and Molecular Biology: Academic Press. pp. 67-111.
4. Boisvert FM, van Koningsbruggen S, Navascues J, Lamond AI, Boisvert F-M, et al. (2007) The multifunctional nucleolus. Nature Reviews Molecular Cell Biology 8: 574-585.
5. Boulon S, Westman BJ, Hutten S, Boisvert FM, Lamond AI, et al. (2010) The nucleolus under stress. Molecular Cell 40: 216-227.
6. Banski P, Kodiha M, Stochaj U, Banski P, Kodiha M, et al. (2010) Chaperones and multitasking proteins in the nucleolus: networking together for survival? Trends in Biochemical Sciences 35: 361-367.
7. Hiscox JA, Whitehouse A, Matthews DA (2010) Nucleolar proteomics and viral infection. PROTEOMICS 10: 4077-4086.
8. Bierne H (2013) Nuclear microbiology - bacterial assault on the nucleolus. EMBO Rep 14: 663-664.
9. Maggi LB, Weber JD (2005) Nucleolar Adaptation in Human Cancer. Cancer Investigation 23: 599-608.
10. Greco A (2009) Involvement of the nucleolus in replication of human viruses. Reviews in Medical Virology 19: 201-214.
11. Derenzini M, Montanaro L, Trere D (2009) What the nucleolus says to a tumour pathologist. Histopathology 54: 753-762.
12. Montanaro L, Trere D, Derenzini M (2008) Nucleolus, ribosomes, and cancer. American Journal of Pathology 173: 301-310.
13. Drygin D, Siddiqui-Jain A, O'Brien S, Schwaebe M, Lin A, et al. (2009) Anticancer activity of CX-3543: a direct inhibitor of rRNA biogenesis. Cancer Research 69: 7653-7661.
14. Ahmad Y, Boisvert FM, Gregor P, Cobley A, Lamond AI (2009) NOPdb, Nucleolar Proteome Database-2008 update. Nucleic Acids Research 37: D181-D184.
15. Chen D, Huang S (2001) Nucleolar Components Involved in Ribosome Biogenesis Cycle between the Nucleolus and Nucleoplasm in Interphase Cells. The Journal of Cell Biology 153: 169-176.
16. Andersen JS, Lam YW, Leung AKL, Ong S-E, Lyon CE, et al. (2005) Nucleolar proteome dynamics. Nature 433: 77-83.
17. Mayer C, Grummt I (2005) Cellular stress and nucleolar function. Cell Cycle 4: 1036-1038.
18. Kar B, Liu B, Zhou Z, Lam Y (2011) Quantitative nucleolar proteomics reveals nuclear re-organization during stress- induced senescence in mouse fibroblast. BMC Cell Biology 12: 33.
19. Burger K, Muhl B, Harasim T, Rohrmoser M, Malamoussi A, et al. (2010) Chemotherapeutic drugs inhibit ribosome biogenesis at various levels. Journal of Biological Chemistry 285: 12416-12425.
20. Lindenboim L, Blacher E, Borner C, Stein R (2010) Regulation of stress-induced nuclear protein redistribution: a new function of Bax and Bak uncoupled from Bcl-x(L). Cell Death & Differentiation 17: 346-359.
21. Kodiha M, Banski P, Stochaj U (2011) Computer-based fluorescence quantification: a novel approach to study nucleolar biology. BMC Cell Biology 12: 25.
22. Avitabile D, Bailey B, Cottage CT, Sundararaman B, Joyo A, et al. (2011) Nucleolar stress is an early response to myocardial damage involving nucleolar proteins nucleostemin and nucleophosmin. Proceedings of the National Academy of Sciences 108: 6145-6150.
23. Khandelwal N, Simpson J, Taylor G, Rafique S, Whitehouse A, et al. (2011) Nucleolar NF-kappa B/RelA mediates apoptosis by causing cytoplasmic relocalization of nucleophosmin. Cell Death Differ 18: 1889-1903.
24. Shav-Tal Y, Blechman J, Darzacq X, Montagna C, Dye BT, et al. (2005) Dynamic Sorting of Nuclear Components into Distinct Nucleolar Caps during Transcriptional Inhibition. Mol Biol Cell 16: 2395-2413.
25. Tajrishi MM, Tuteja R, Tuteja N (2011) Nucleolin: The most abundant multifunctional phosphoprotein of nucleolus. Communicative & Integrative Biology 4: 267-275.
26. Behrens P, Brinkmann U, Wellmann A (2003) CSE1L/CAS: Its role in proliferation and apoptosis. Apoptosis 8: 39-44.
27. Tanaka T, Ohkubo S, Tatsuno I, Prives C (2007) hCAS/CSE1L Associates with Chromatin and Regulates Expression of Select p53 Target Genes. Cell 130: 638-650.
28. Kodiha M, Banski P, Ho-Wo-Cheong D, Stochaj U (2008) Dissection of the molecular mechanisms that control the nuclear accumulation of transport factors importin-alpha and CAS in stressed cells. Cellular & Molecular Life Sciences 65: 1756-1767.
29. Kodiha M, Tran D, Morogan A, Qian C, Stochaj U (2009) Dissecting the signaling events that impact classical nuclear import and target nuclear transport factors. PLoS ONE 4: e8420.
30. Tanaka T, Ohkubo S, Tatsuno I, Prives C (2007) hCAS/CSE1L associates with chromatin and regulates expression of select p53 target genes. Cell 130: 638-650.
31. Brennan CM, Steitz JA (2001) HuR and mRNA stability. Cellular and Molecular Life Sciences CMLS 58: 266-277.
32. Ma W-J, Cheng S, Campbell C, Wright A, Furneaux H (1996) Cloning and Characterization of HuR, a Ubiquitously Expressed Elav-like Protein. Journal of Biological Chemistry 271: 8144-8151.
33. Gallouzi I-E, Brennan CM, Stenberg MG, Swanson MS, Eversole A, et al. (2000) HuR binding to cytoplasmic mRNA is perturbed by heat shock. Proceedings of the National Academy of Sciences 97: 3073-3078.
34. Kedersha N, Anderson P (2002) Stress granules: sites of mRNA triage that regulate mRNA stability and translatability. Biochemical Society Transactions 30: 963-969.
35. Kodiha M, Stochaj U (2012) Nuclear Transport: A Switch for the Oxidative Stress - Signaling Circuit? Journal of Signal Transduction 2012.
36. Mahboubi H, Kodiha M, Stochaj U (2013) Automated Detection and Quantification of Granular Cell Compartments. Microscopy and Microanalysis First View: 1-12.
37. Louvet E, Junera HR, Berthuy I, Hernandez-Verdun D (2006) Compartmentation of the Nucleolar Processing Proteins in the Granular Component Is a CK2-driven Process. Molecular Biology of the Cell 17: 2537-2546.
38. Sobell HM (1985) Actinomycin and DNA transcription. Proceedings of the National Academy of Sciences 82: 5328-5331.
39. Zandomeni R, Zandomeni MC, Shugar D, Weinmann R (1986) Casein kinase type II is involved in the inhibition by 5,6-dichloro-1-beta-D- ribofuranosylbenzimidazole of specific RNA polymerase II transcription. Journal of Biological Chemistry 261: 3414-3419.
40. Turner AJ, Knox AA, Watkins NJ (2012) Nucleolar disruption leads to the spatial separation of key 18S rRNA processing factors. Rna Biology 9: 175-186.
41. Mahboubi H, Seganathy E, Kong D, Stochaj U (2013) Identification of Novel Stress Granule Components That Are Involved in Nuclear Transport. PLoS ONE 8: e68356.
42. Kodiha M, Banski P, Stochaj U (2011) Computer-based fluorescence quantification: a novel approach to study nucleolar biology. BMC Cell Biology 12: 25.
43. Kodiha M, Brown CM, Stochaj U (2008) Analysis of signaling events by combining high-throughput screening technology with computer-based image analysis. Science Signaling 1: pl2.
44. Schneider CA, Rasband WS, Eliceiri KW (2012) NIH Image to ImageJ: 25 years of image analysis. Nat Meth 9: 671-675.
45. Ginisty H, Sicard H, Roger B, Bouvet P (1999) Structure and functions of nucleolin. Journal of Cell Science 112: 761-772.
46. Politz JC, Polena I, Trask I, Bazett-Jones DP, Pederson T (2005) A nonribosomal landscape in the nucleolus revealed by the stem cell protein nucleostemin. Molecular Biology of the Cell 16: 3401-3410.
47. Romanova L, Kellner S, Katoku-Kikyo N, Kikyo N (2009) Novel Role of Nucleostemin in the Maintenance of Nucleolar Architecture and Integrity of Small Nucleolar Ribonucleoproteins and the Telomerase Complex. Journal of Biological Chemistry 284: 26685-26694.
48. Guetg C, Santoro R (2012) Formation of nuclear heterochromatin: the nucleolar point of view. Epigenetics: Official Journal of the DNA Methylation Society 7: 811-814.
49. Maison C, Almouzni G (2004) HP1 and the dynamics of heterochromatin maintenance. Nat Rev Mol Cell Biol 5: 296-305.
50. Bensaude O (2011) Inhibiting eukaryotic transcription. Which compound to choose? How to evaluate its activity? Transcription 2: 103-108.
51. Lindstrom MS (2011) NPM1/B23: A Multifunctional Chaperone in Ribosome Biogenesis and Chromatin Remodeling. Biochemistry Research International 2011.
52. Kodiha M, Stochaj U (2013) Chaperones and Multitasking Proteins in the Nucleolus. Proteins of the Nucleolus: Springer Netherlands. pp. 149-172.