-
2
-
-
77950063427
-
Cultivation and quantitative proteomic analyses of acidophilic microbial communities
-
Belnap, C. P. et al. (2010) Cultivation and quantitative proteomic analyses of acidophilic microbial communities. Isme J., 4, 520-530.
-
(2010)
Isme J
, vol.4
, pp. 520-530
-
-
Belnap, C.P.1
-
3
-
-
33750953227
-
Whole-genome re-sequencing
-
Bentley, D. R. (2006) Whole-genome re-sequencing. Curr. Opin. Genet. Dev., 16, 545-552.
-
(2006)
Curr. Opin. Genet. Dev.
, vol.16
, pp. 545-552
-
-
Bentley, D.R.1
-
4
-
-
61649118780
-
Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere
-
Berg, G. and Smalla, K. (2009) Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol. Ecol., 68, 1-13.
-
(2009)
FEMS Microbiol. Ecol.
, vol.68
, pp. 1-13
-
-
Berg, G.1
Smalla, K.2
-
5
-
-
34250873383
-
Detection and validation of non-synonymous coding SNPs from orthogonal analysis of shotgun proteomics data
-
Bunger, M. K. et al. (2007) Detection and validation of non-synonymous coding SNPs from orthogonal analysis of shotgun proteomics data. J. Proteome Res., 6, 2331-2340.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 2331-2340
-
-
Bunger, M.K.1
-
6
-
-
79952431239
-
The problem with peptide presumption and low Mascot scoring
-
Cooper, B. (2011) The problem with peptide presumption and low Mascot scoring. J. Proteome Res., 10, 1432-1435.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 1432-1435
-
-
Cooper, B.1
-
7
-
-
0141955057
-
A method for reducing the time required to match protein sequences with tandem mass spectra
-
Craig, R. and Beavis, R. C. (2003) A method for reducing the time required to match protein sequences with tandem mass spectra. Rapid Commun. Mass Spectrom., 17, 2310-2316.
-
(2003)
Rapid Commun. Mass Spectrom.
, vol.17
, pp. 2310-2316
-
-
Craig, R.1
Beavis, R.C.2
-
8
-
-
77950660595
-
TagRecon: high-throughput mutation identification through sequence tagging
-
Dasari, S. et al. (2010) TagRecon: high-throughput mutation identification through sequence tagging. J. Proteome Res., 9, 1716-1726.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 1716-1726
-
-
Dasari, S.1
-
9
-
-
77951498518
-
AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature
-
Denef, V. J. et al. (2010) AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. Isme J., 4, 599-610.
-
(2010)
Isme J
, vol.4
, pp. 599-610
-
-
Denef, V.J.1
-
10
-
-
0000857494
-
An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
-
Eng, J. K. et al. (1994) An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database. J. Am. Soc. Mass Spectrom., 5, 976-989.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
-
11
-
-
80555146717
-
Aface in the crowd: recognizing peptides through database search
-
Eng, J. K. et al. (2011)Aface in the crowd: recognizing peptides through database search. Mol. Cell Proteomics, 10, R111 009522.
-
(2011)
Mol. Cell Proteomics
, vol.10
, pp. 009522
-
-
Eng, J.K.1
-
12
-
-
0034652301
-
Automated identification of amino acid sequence variations in proteins by HPLC/microspray tandem mass spectrometry
-
Gatlin, C. L. et al. (2000) Automated identification of amino acid sequence variations in proteins by HPLC/microspray tandem mass spectrometry. Anal. Chem., 72, 757-763.
-
(2000)
Anal. Chem.
, vol.72
, pp. 757-763
-
-
Gatlin, C.L.1
-
13
-
-
0348103717
-
Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris
-
Larimer, F. W. et al. (2004) Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. Nat. Biotechnol., 22, 55-61.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 55-61
-
-
Larimer, F.W.1
-
14
-
-
70349761870
-
Shotgun protein identification and quantification by mass spectrometry
-
Lu, B. et al. (2009) Shotgun protein identification and quantification by mass spectrometry. Methods Mol. Biol., 564, 261-288.
-
(2009)
Methods Mol. Biol.
, vol.564
, pp. 261-288
-
-
Lu, B.1
-
15
-
-
79151484424
-
The study of eQTL variations by RNA-seq: from SNPs to phenotypes
-
Majewski, J. and Pastinen, T. (2011) The study of eQTL variations by RNA-seq: from SNPs to phenotypes. Trends Genet., 27, 72-79.
-
(2011)
Trends Genet
, vol.27
, pp. 72-79
-
-
Majewski, J.1
Pastinen, T.2
-
16
-
-
78751570979
-
RNA sequencing: advances, challenges and opportunities
-
Ozsolak, F. and Milos, P. M. (2011) RNA sequencing: advances, challenges and opportunities. Nat. Rev. Genet., 12, 87-98.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 87-98
-
-
Ozsolak, F.1
Milos, P.M.2
-
17
-
-
43849089302
-
Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics
-
Pan, C. et al. (2008) Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics. Mol. Cell Proteomics, 7, 938-948.
-
(2008)
Mol. Cell Proteomics
, vol.7
, pp. 938-948
-
-
Pan, C.1
-
18
-
-
77950521889
-
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
-
Pan, C. et al. (2010) A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. BMC Bioinformatics, 11, 118.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 118
-
-
Pan, C.1
-
19
-
-
79953305843
-
Quantitative tracking of isotope flows in proteomes of microbial communities
-
Pan, C. et al. (2011) Quantitative tracking of isotope flows in proteomes of microbial communities. Mol. Cell Proteomics, 10, M110 006049.
-
(2011)
Mol. Cell Proteomics
, vol.10
, pp. 006049
-
-
Pan, C.1
-
20
-
-
8344284323
-
A common open representation of mass spectrometry data and its application to proteomics research
-
Pedrioli, P. G. et al. (2004) A common open representation of mass spectrometry data and its application to proteomics research. Nat. Biotechnol., 22, 1459-1466.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1459-1466
-
-
Pedrioli, P.G.1
-
21
-
-
0037277179
-
Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome
-
Peng, J. et al. (2003) Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J. Proteome Res., 2, 43-50.
-
(2003)
J. Proteome Res.
, vol.2
, pp. 43-50
-
-
Peng, J.1
-
22
-
-
21344465408
-
Community proteomics of a natural microbial biofilm
-
Ram, R. J. et al. (2005) Community proteomics of a natural microbial biofilm. Science, 308, 1915-1920.
-
(2005)
Science
, vol.308
, pp. 1915-1920
-
-
Ram, R.J.1
-
23
-
-
0035173378
-
dbSNP: the NCBI database of genetic variation
-
Sherry, S. T. et al. (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res., 29, 308-311.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
-
24
-
-
34848889259
-
The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra
-
Shilov, I. V. et al. (2007) The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra. Mol. Cell Proteomics, 6, 1638-1655.
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 1638-1655
-
-
Shilov, I.V.1
-
25
-
-
0345600791
-
GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model
-
Tabb, D. L. et al. (2003) GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model. Anal. Chem., 75, 6415-6421.
-
(2003)
Anal. Chem.
, vol.75
, pp. 6415-6421
-
-
Tabb, D.L.1
-
26
-
-
17644405163
-
DBDigger: reorganized proteomic database identification that improves flexibility and speed
-
Tabb, D. L. et al. (2005) DBDigger: reorganized proteomic database identification that improves flexibility and speed. Anal. Chem., 77, 2464-2474.
-
(2005)
Anal. Chem.
, vol.77
, pp. 2464-2474
-
-
Tabb, D.L.1
-
27
-
-
55249118638
-
DirecTag: accurate sequence tags from peptide MS/MS through statistical scoring
-
Tabb, D. L. et al. (2008) DirecTag: accurate sequence tags from peptide MS/MS through statistical scoring. J. Proteome Res., 7, 3838-3846.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3838-3846
-
-
Tabb, D.L.1
-
28
-
-
27544511899
-
InsPecT: identification of posttranslationally modified peptides from tandem mass spectra
-
Tanner, S. et al. (2005) InsPecT: identification of posttranslationally modified peptides from tandem mass spectra. Anal. Chem., 77, 4626-4639.
-
(2005)
Anal. Chem.
, vol.77
, pp. 4626-4639
-
-
Tanner, S.1
-
29
-
-
31944437874
-
Metaproteomics: studying functional gene expression in microbial ecosystems
-
Wilmes, P. and Bond, P. L. (2006) Metaproteomics: studying functional gene expression in microbial ecosystems. Trends Microbiol., 14, 92-97.
-
(2006)
Trends Microbiol
, vol.14
, pp. 92-97
-
-
Wilmes, P.1
Bond, P.L.2
-
30
-
-
33645471793
-
A microbial world within us
-
Zoetendal, E. G. et al. (2006) A microbial world within us. Mol. Microbiol., 59, 1639-1650.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 1639-1650
-
-
Zoetendal, E.G.1
|