-
1
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill, S. R. et al. Metagenomic analysis of the human distal gut microbiome. Science 312, 1355-1359 (2006).
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
-
2
-
-
48749117805
-
Metagenomic signature of the Peru margin subseafloor biosphere show a genetically distinct environment
-
Biddle, J. F., Fitz-Gibbon, S., Schuster, S. C., Brenchley, J. E. & House, C. H. Metagenomic signature of the Peru Margin subseafloor biosphere show a genetically distinct environment. Proc. Natl. Acad. Sci. U. S. A. 105, 10583-10588 (2008).
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 10583-10588
-
-
Biddle, J.F.1
Fitz-Gibbon, S.2
Schuster, S.C.3
Brenchley, J.E.4
House, C.H.5
-
3
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale, E. A. et al. Functional metagenomic profiling of nine biomes. Nature 452, 629-632 (2008).
-
(2008)
Nature
, vol.452
, pp. 629-632
-
-
Dinsdale, E.A.1
-
4
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh, P. J. et al. A core gut microbiome in obese and lean twins. Nature 457, 480-484 (2009).
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
-
5
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam, M. et al. Enterotypes of the human gut microbiome. Nature 473, 174-180 (2011).
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
-
6
-
-
79951810387
-
Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries
-
Xie, W. et al. Comparative Metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries. ISME J. 5, 414-426 (2011).
-
(2011)
ISME J.
, vol.5
, pp. 414-426
-
-
Xie, W.1
-
7
-
-
33847280283
-
Prediction of effective genome size in metagenomic samples
-
Raes, J., and Korbel., J. O., Lercher, M. J., von Mering, C. & Bork, P. Prediction of effective genome size in metagenomic samples. Genome Biol. 8, R10 (2007).
-
(2007)
Genome Biol.
, vol.8
, pp. R10
-
-
Raes, J.1
Korbel, J.O.2
Lercher, M.J.3
Von Mering, C.4
Bork, P.5
-
8
-
-
53849104257
-
The rational exploration of microbial diversity
-
Quince, C., Curtis, T. P. & Sloan, W. T. The rational exploration of microbial diversity. ISME J. 2, 997-1006 (2008).
-
(2008)
ISME J.
, vol.2
, pp. 997-1006
-
-
Quince, C.1
Curtis, T.P.2
Sloan, W.T.3
-
9
-
-
57349141505
-
A bioinformatician's guide to metagenomics
-
Kunin, V., Copeland, A., Lapidus, A., Mavromatis, K. & Hugenholtz, P. A bioinformatician's guide to metagenomics. Microbiol. Mol. Biol. Rev. 72, 557-578 (2008).
-
(2008)
Microbiol. Mol. Biol. Rev.
, vol.72
, pp. 557-578
-
-
Kunin, V.1
Copeland, A.2
Lapidus, A.3
Mavromatis, K.4
Hugenholtz, P.5
-
10
-
-
84860855706
-
COVER: A priori estimation of coverage for metagenomic sequencing
-
Tamames, J., de la Peña, S. & de Lorenzo, V. COVER: a priori estimation of coverage for metagenomic sequencing. Environ. Microbiol. Rep. 4, 335-341 (2012).
-
(2012)
Environ. Microbiol. Rep.
, vol.4
, pp. 335-341
-
-
Tamames, J.1
De La Peña, S.2
De Lorenzo, V.3
-
11
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
Sogin, M. L. et al. Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc. Natl. Acad. Sci. U. S. A. 103, 12115-12120 (2006).
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
-
12
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg, P. B. et al. Diversity of the human intestinal microbial flora. Science 308, 1635-1638 (2005).
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
-
13
-
-
84858863014
-
Individual genome assembly from complex community short-read metagenomic datasets
-
Luo, C., Tsementzi, D., Kyrpides, N. C. & Konstantinidis, K. T. Individual genome assembly from complex community short-read metagenomic datasets. ISME J. 6, 898-901 (2012).
-
(2012)
ISME J.
, vol.6
, pp. 898-901
-
-
Luo, C.1
Tsementzi, D.2
Kyrpides, N.C.3
Konstantinidis, K.T.4
-
14
-
-
0041919471
-
Ribosomal DNA sequencing for identification of aerobic gram-positive rods in the clinical laboratory (an 18-month evaluation)
-
Bosshard, P. P., Abels, S., Zbinden, R., Bottger, E. C. & Altwegg, M. Ribosomal DNA sequencing for identification of aerobic gram-positive rods in the clinical laboratory (an 18-month evaluation). J. Clin. Microbiol. 41, 4134-4140 (2003).
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 4134-4140
-
-
Bosshard, P.P.1
Abels, S.2
Zbinden, R.3
Bottger, E.C.4
Altwegg, M.5
-
15
-
-
35148888609
-
Microbial population structures in the deep marine biosphere
-
Huber, J. A. et al. Microbial population structures in the deep marine biosphere. Science 318, 97-100 (2007).
-
(2007)
Science
, vol.318
, pp. 97-100
-
-
Huber, J.A.1
-
16
-
-
54549106898
-
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
-
Liu, Z., and DeSantis., T. Z., Andersen, G. L. & Knight, R. Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res. 36, e120 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. e120
-
-
Liu, Z.1
DeSantis, T.Z.2
Andersen, G.L.3
Knight, R.4
-
17
-
-
79961081161
-
Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads
-
Bartram, A. K., Lynch, M. D. J., Stearns, J. C., Moreno-Hagelsieb, G. & Neufeld, J.D. Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads. Appl. Environ. Microb. 77, 3846-3852 (2011).
-
(2011)
Appl. Environ. Microb.
, vol.77
, pp. 3846-3852
-
-
Bartram, A.K.1
Lynch, M.D.J.2
Stearns, J.C.3
Moreno-Hagelsieb, G.4
Neufeld, J.D.5
-
18
-
-
79953026036
-
BIPES, a cost-effective high-throughput method for assessing microbial diversity
-
Zhou, H. W. et al. BIPES, a cost-effective high-throughput method for assessing microbial diversity. ISME J. 5, 741-749 (2011).
-
(2011)
ISME J.
, vol.5
, pp. 741-749
-
-
Zhou, H.W.1
-
19
-
-
79952266302
-
The evolution of host specialization in the vertebrate gut symbiont lactobacillus reuteri
-
Frese, S. A. et al. The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri. PLoS Genet. 7, e1001314 (2011).
-
(2011)
PLoS Genet.
, vol.7
-
-
Frese, S.A.1
-
20
-
-
77955387973
-
Real-time relative qPCR without reference to control samples and estimation of run-specific PCR parameters from run-internal mini-standard curves
-
Bernth Jensen, J. M., Petersen, M. S., Stegger, M., Østergaard, L. J. & Møller, B. K. Real-time relative qPCR without reference to control samples and estimation of run-specific PCR parameters from run-internal mini-standard curves. PLoS ONE 5, e11723 (2010).
-
(2010)
PLoS ONE
, vol.5
-
-
Bernth Jensen, J.M.1
Petersen, M.S.2
Stegger, M.3
Østergaard, L.J.4
Møller, B.K.5
-
21
-
-
84861898310
-
IMG: The integrated microbial genomes database and comparative analysis system
-
Markowitz, V. M. et al. IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40, D115-D122 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D115-D122
-
-
Markowitz, V.M.1
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