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Volumn 4, Issue 3, 2012, Pages 335-341

COVER: A priori estimation of coverage for metagenomic sequencing

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OTUS;

EID: 84860855706     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/j.1758-2229.2012.00338.x     Document Type: Article
Times cited : (10)

References (28)
  • 3
    • 0344898137 scopus 로고    scopus 로고
    • Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample
    • Chao, A., and Shen, T. (2003) Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample. Environ Ecol Stat 10: 429-443.
    • (2003) Environ Ecol Stat , vol.10 , pp. 429-443
    • Chao, A.1    Shen, T.2
  • 4
    • 55449131166 scopus 로고    scopus 로고
    • Bioinformatics for whole-genome shotgun sequencing of microbial communities
    • Chen, K., and Pachter, L. (2005) Bioinformatics for whole-genome shotgun sequencing of microbial communities. PLoS Comput Biol 1: 106-112.
    • (2005) PLoS Comput Biol , vol.1 , pp. 106-112
    • Chen, K.1    Pachter, L.2
  • 5
    • 23944487811 scopus 로고    scopus 로고
    • Exploring microbial diversity - a vast below
    • Curtis, T.P., and Sloan, W.T. (2005) Exploring microbial diversity - a vast below. Science 309: 1331-1333.
    • (2005) Science , vol.309 , pp. 1331-1333
    • Curtis, T.P.1    Sloan, W.T.2
  • 6
    • 77957025820 scopus 로고    scopus 로고
    • Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
    • Cuvelier, M.L., Allen, A.E., Monier, A., McCrow, J.P., Messie, M., Tringe, S.G., etal. (2010) Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proc Natl Acad Sci U S A 107: 14679-14684.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 14679-14684
    • Cuvelier, M.L.1    Allen, A.E.2    Monier, A.3    McCrow, J.P.4    Messie, M.5    Tringe, S.G.6
  • 9
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: application of genomics to uncultured microorganisms
    • Handelsman, J. (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68: 669-685.
    • (2004) Microbiol Mol Biol Rev , vol.68 , pp. 669-685
    • Handelsman, J.1
  • 10
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., Goebel, B.M., and Pace, N.R. (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180: 4765-4774.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 11
  • 14
    • 0023988195 scopus 로고
    • Genomic mapping by fingerprinting random clones: a mathematical analysis
    • Lander, E.S., and Waterman, M.S. (1988) Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics 2: 231-239.
    • (1988) Genomics , vol.2 , pp. 231-239
    • Lander, E.S.1    Waterman, M.S.2
  • 15
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W., and Godzik, A. (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 16
    • 84858863014 scopus 로고    scopus 로고
    • Individual genome assembly from complex community short-read metagenomic datasets
    • Luo, C., Tsementzi, D., Kyrpides, N.C., and Konstantinidis, K.T. (2012) Individual genome assembly from complex community short-read metagenomic datasets. ISME J 6: 898-901.
    • (2012) ISME J , vol.6 , pp. 898-901
    • Luo, C.1    Tsementzi, D.2    Kyrpides, N.C.3    Konstantinidis, K.T.4
  • 17
    • 35748959318 scopus 로고    scopus 로고
    • What's in the mix: phylogenetic classification of metagenome sequence samples
    • McHardy, A.C., and Rigoutsos, I. (2007) What's in the mix: phylogenetic classification of metagenome sequence samples. Curr Opin Microbiol 10: 499-503.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 499-503
    • McHardy, A.C.1    Rigoutsos, I.2
  • 18
    • 79956301905 scopus 로고    scopus 로고
    • Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
    • Muegge, B., Kuczynski, J., Knigths, D., Clemente, J.C., Gonzalez, A., Fontana, L., etal. (2011) Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332: 970-974.
    • (2011) Science , vol.332 , pp. 970-974
    • Muegge, B.1    Kuczynski, J.2    Knigths, D.3    Clemente, J.C.4    Gonzalez, A.5    Fontana, L.6
  • 19
    • 79952108717 scopus 로고    scopus 로고
    • Sequencing and genome assembly using next-generation technologies
    • Nagarajan, N., and Pop, M. (2010) Sequencing and genome assembly using next-generation technologies. Methods Mol Biol 673: 1-17.
    • (2010) Methods Mol Biol , vol.673 , pp. 1-17
    • Nagarajan, N.1    Pop, M.2
  • 20
    • 53849104257 scopus 로고    scopus 로고
    • The rational exploration of microbial diversity
    • Quince, C., Curtis, T.P., and Sloan, W.T. (2008) The rational exploration of microbial diversity. ISME J 2: 997-1006.
    • (2008) ISME J , vol.2 , pp. 997-1006
    • Quince, C.1    Curtis, T.P.2    Sloan, W.T.3
  • 22
    • 70449723278 scopus 로고    scopus 로고
    • Visualization of ribosomal RNA operon copy number distribution
    • Rastogi, R., Wu, M., Dasgupta, I., and Fox, G.E. (2009) Visualization of ribosomal RNA operon copy number distribution. BMC Microbiol 9: 208.
    • (2009) BMC Microbiol , vol.9 , pp. 208
    • Rastogi, R.1    Wu, M.2    Dasgupta, I.3    Fox, G.E.4
  • 23
    • 15444362001 scopus 로고    scopus 로고
    • Introducing dotur, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P.D., and Handelsman, J. (2005) Introducing dotur, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 24
    • 0028028182 scopus 로고
    • A place for DNA-DNA reassociation and 16S rRNA sequence-analysis in the present species definition in bacteriology
    • Stackebrandt, E., and Goebel, B.M. (1994) A place for DNA-DNA reassociation and 16S rRNA sequence-analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44: 846-849.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 26
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G.M., Tiedje, J.M., and Cole, J.R. (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 28
    • 33947235074 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families
    • Yooseph, S., Sutton, G., Rusch, D.B., Halpern, A.L., Williamson, S.J., Remington, K., etal. (2007) The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol 5: e16.
    • (2007) PLoS Biol , vol.5
    • Yooseph, S.1    Sutton, G.2    Rusch, D.B.3    Halpern, A.L.4    Williamson, S.J.5    Remington, K.6


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