-
1
-
-
33748494471
-
Study of an alternate glyoxylate cycle for acetate assimilation by Rhodobacter sphaeroides
-
Alber, B.E., Spanheimer, R., Ebenau-Jehle, C., and Fuchs, G. (2006) Study of an alternate glyoxylate cycle for acetate assimilation by Rhodobacter sphaeroides. Mol Microbiol 61: 297-309.
-
(2006)
Mol Microbiol
, vol.61
, pp. 297-309
-
-
Alber, B.E.1
Spanheimer, R.2
Ebenau-Jehle, C.3
Fuchs, G.4
-
2
-
-
34249903107
-
Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in northwestern Mediterranean coastal waters
-
Alonso-Sáez, L., and Gasol, J.M. (2006) Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in northwestern Mediterranean coastal waters. Appl Environ Microbiol 73: 3528-3535.
-
(2006)
Appl Environ Microbiol
, vol.73
, pp. 3528-3535
-
-
Alonso-Sáez, L.1
Gasol, J.M.2
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0002863990
-
Release of aminoacids and inorganic nutrients by heterotrophic marine microflagellates
-
Andersson, A., Lee, C., Azam, F., and Hagström, Å. (1985) Release of aminoacids and inorganic nutrients by heterotrophic marine microflagellates. Mar Ecol Prog Ser 23: 99-106.
-
(1985)
Mar Ecol Prog Ser
, vol.23
, pp. 99-106
-
-
Andersson, A.1
Lee, C.2
Azam, F.3
Hagström, A.4
-
5
-
-
33748696038
-
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
-
Auch, A.F., Henz, S.R., Holland, B., and Göker, M. (2006) Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences. BMC Bioinformatics 7: 350.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 350
-
-
Auch, A.F.1
Henz, S.R.2
Holland, B.3
Göker, M.4
-
6
-
-
40549120596
-
The RAST server: rapid annotations using subsystems technology
-
Aziz, R.K., Bartels, D., Best, A.A., DeJongh, M., Disz, T., Edwards, R.A., etal. (2008) The RAST server: rapid annotations using subsystems technology. BMC Genomics 9: 75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
-
7
-
-
84865779683
-
Regulation of the histidine utilization (Hut) system in bacteria
-
Bender, R.A. (2012) Regulation of the histidine utilization (Hut) system in bacteria. Microbiol Mol Biol Rev 76: 565-584.
-
(2012)
Microbiol Mol Biol Rev
, vol.76
, pp. 565-584
-
-
Bender, R.A.1
-
8
-
-
84855367993
-
Tropodithietic acid production in Phaeobacter gallaeciensis is regulated by N-acyl homoserine lactone-mediated quorum sensing
-
Berger, M., Neumann, A., Schulz, S., Simon, M., and Brinkhoff, T. (2011) Tropodithietic acid production in Phaeobacter gallaeciensis is regulated by N-acyl homoserine lactone-mediated quorum sensing. J Bacteriol 193: 6576-6585.
-
(2011)
J Bacteriol
, vol.193
, pp. 6576-6585
-
-
Berger, M.1
Neumann, A.2
Schulz, S.3
Simon, M.4
Brinkhoff, T.5
-
9
-
-
0019511136
-
Substrate specificity of the pyruvate dehydrogenase complex from Escherichia coli
-
Bisswanger, H. (1981) Substrate specificity of the pyruvate dehydrogenase complex from Escherichia coli. J Biol Chem 256: 815-822.
-
(1981)
J Biol Chem
, vol.256
, pp. 815-822
-
-
Bisswanger, H.1
-
10
-
-
38049179041
-
Identification and analysis of a glutaryl-CoA dehydrogenase-encoding gene and its cognate transcriptional regulator from Azoarcus sp. CIB
-
Blázquez, B., Carmona, M., García, J.L., and Díaz, E. (2008) Identification and analysis of a glutaryl-CoA dehydrogenase-encoding gene and its cognate transcriptional regulator from Azoarcus sp. CIB. Environ Microbiol 10: 474-482.
-
(2008)
Environ Microbiol
, vol.10
, pp. 474-482
-
-
Blázquez, B.1
Carmona, M.2
García, J.L.3
Díaz, E.4
-
11
-
-
0017184389
-
A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M.M. (1976) A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
12
-
-
43949120140
-
Diversity, ecology, and genomics of the Roseobacter clade: a short overview
-
Brinkhoff, T., Giebel, H.-A., and Simon, M. (2008) Diversity, ecology, and genomics of the Roseobacter clade: a short overview. Arch Microbiol 189: 531-539.
-
(2008)
Arch Microbiol
, vol.189
, pp. 531-539
-
-
Brinkhoff, T.1
Giebel, H.-A.2
Simon, M.3
-
13
-
-
32044436041
-
Ecology, inhibitory activity, and morphogenesis of a marine antagonistic bacterium belonging to the Roseobacter clade
-
Bruhn, J.B., Nielsen, K.F., Hjelm, M., Hansen, M., Bresciani, J., Schulz, S., etal. (2005) Ecology, inhibitory activity, and morphogenesis of a marine antagonistic bacterium belonging to the Roseobacter clade. Appl Environ Microbiol 71: 7263-7270.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7263-7270
-
-
Bruhn, J.B.1
Nielsen, K.F.2
Hjelm, M.3
Hansen, M.4
Bresciani, J.5
Schulz, S.6
-
14
-
-
26844510681
-
Overview of the marine Roseobacter lineage
-
Buchan, A., González, J.M., and Moran, M.A. (2005) Overview of the marine Roseobacter lineage. Appl Environ Microbiol 71: 5665-5677.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 5665-5677
-
-
Buchan, A.1
González, J.M.2
Moran, M.A.3
-
16
-
-
84860490976
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
Caspi, R., Altman, T., Dreher, K., Fulcher, C.A., Subhraveti, P., Keseler, I.M., etal. (2012) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res 40: D742-D753.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Caspi, R.1
Altman, T.2
Dreher, K.3
Fulcher, C.A.4
Subhraveti, P.5
Keseler, I.M.6
-
17
-
-
0019459212
-
Threonine as a carbon source for Escherichia coli
-
Chan, T.T.K., and Newman, E.B. (1981) Threonine as a carbon source for Escherichia coli. J Bacteriol 145: 1150-1153.
-
(1981)
J Bacteriol
, vol.145
, pp. 1150-1153
-
-
Chan, T.T.K.1
Newman, E.B.2
-
18
-
-
0030437273
-
3-Hydroxyisobutyrate dehydrogenase from Pseudomonas putida E23: purification and characterization
-
Chowdhury, E.K., Nagata, S., and Misono, H. (1996) 3-Hydroxyisobutyrate dehydrogenase from Pseudomonas putida E23: purification and characterization. Biosci Biotech Biochem 60: 2043-2047.
-
(1996)
Biosci Biotech Biochem
, vol.60
, pp. 2043-2047
-
-
Chowdhury, E.K.1
Nagata, S.2
Misono, H.3
-
19
-
-
0035213261
-
Origin and biogeochemical cycling of organic nitrogen in the eastern Arctic Ocean as evident from D- and l-amino acids
-
Dittmar, T., Fitznar, H.P., and Kattner, G. (2001) Origin and biogeochemical cycling of organic nitrogen in the eastern Arctic Ocean as evident from D- and l-amino acids. Geochim Cosmochim Acta 65: 4103-4114.
-
(2001)
Geochim Cosmochim Acta
, vol.65
, pp. 4103-4114
-
-
Dittmar, T.1
Fitznar, H.P.2
Kattner, G.3
-
20
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
22
-
-
0025362827
-
Methionine metabolism in mammals
-
Finkelstein, J.D. (1990) Methionine metabolism in mammals. J Nutr Biochem 1: 228-237.
-
(1990)
J Nutr Biochem
, vol.1
, pp. 228-237
-
-
Finkelstein, J.D.1
-
23
-
-
0017361672
-
Catabolism of l-lysine by Pseudomonas aeruginosa
-
Fothergill, J.C., and Guest, J.R. (1977) Catabolism of l-lysine by Pseudomonas aeruginosa. J Gen Microbiol 99: 139-155.
-
(1977)
J Gen Microbiol
, vol.99
, pp. 139-155
-
-
Fothergill, J.C.1
Guest, J.R.2
-
24
-
-
80054757000
-
Microbial degradation of aromatic compounds - from one strategy to four
-
Fuchs, G., Boll, M., and Heider, J. (2011) Microbial degradation of aromatic compounds - from one strategy to four. Nature Microbiol Rev 9: 803-816.
-
(2011)
Nature Microbiol Rev
, vol.9
, pp. 803-816
-
-
Fuchs, G.1
Boll, M.2
Heider, J.3
-
25
-
-
0041871026
-
Evaluation of two-dimensional difference gel electrophoresis for protein profiling
-
Gade, D., Thiermann, J., Markowsky, D., and Rabus, R. (2003) Evaluation of two-dimensional difference gel electrophoresis for protein profiling. J Mol Microbiol Biotechnol 5: 240-251.
-
(2003)
J Mol Microbiol Biotechnol
, vol.5
, pp. 240-251
-
-
Gade, D.1
Thiermann, J.2
Markowsky, D.3
Rabus, R.4
-
26
-
-
22744459517
-
Proteomic analysis of carbohydrate catabolism and regulation in the marine bacterium Rhodopirellula baltica
-
Gade, D., Gobom, J., and Rabus, R. (2005) Proteomic analysis of carbohydrate catabolism and regulation in the marine bacterium Rhodopirellula baltica. Proteomics 5: 3672-3683.
-
(2005)
Proteomics
, vol.5
, pp. 3672-3683
-
-
Gade, D.1
Gobom, J.2
Rabus, R.3
-
27
-
-
77954296666
-
A new bioinformatics analysis tools framework at EMBL-EBI
-
Goujon, M., McWilliam, H., Li, W., Valentin, F., Squizzato, S., Paern, J., and Lopez, R. (2010) A new bioinformatics analysis tools framework at EMBL-EBI. Nucleic Acids Res 38: W695-W699.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Goujon, M.1
McWilliam, H.2
Li, W.3
Valentin, F.4
Squizzato, S.5
Paern, J.6
Lopez, R.7
-
28
-
-
0027400782
-
Purification of glutaryl-CoA dehydrogenase from Pseudomonas sp., an enzyme involved in the anaerobic degradation of benzoate
-
Härtel, U., Eckel, E., Koch, J., Fuchs, G., Linder, D., and Buckel, W. (1993) Purification of glutaryl-CoA dehydrogenase from Pseudomonas sp., an enzyme involved in the anaerobic degradation of benzoate. Arch Microbiol 159: 174-181.
-
(1993)
Arch Microbiol
, vol.159
, pp. 174-181
-
-
Härtel, U.1
Eckel, E.2
Koch, J.3
Fuchs, G.4
Linder, D.5
Buckel, W.6
-
29
-
-
19544379902
-
Whole genome-based prokaryotic phylogeny
-
Henz, S.R., Huson, D.H., Auch, A.F., Nieselt-Struwe, K., and Schuster, S.C. (2005) Whole genome-based prokaryotic phylogeny. Bioinformatics 21: 2329-2335.
-
(2005)
Bioinformatics
, vol.21
, pp. 2329-2335
-
-
Henz, S.R.1
Huson, D.H.2
Auch, A.F.3
Nieselt-Struwe, K.4
Schuster, S.C.5
-
30
-
-
36849014457
-
An empirical test of the midpoint rooting method
-
Hess, P.N., and De Moraes Russo, C.A. (2007) An empirical test of the midpoint rooting method. Biol J Linnean Soc 92: 669-674.
-
(2007)
Biol J Linnean Soc
, vol.92
, pp. 669-674
-
-
Hess, P.N.1
De Moraes Russo, C.A.2
-
31
-
-
2342617445
-
Highly stable l-lysine 6-dehydrogenase from the thermophile Geobacillus stearothermophilus isolated from a Japanese hot spring: characterization, gene cloning and sequencing, and expression
-
Heydari, M., Ohshima, T., Nunoura-Kominato, N., and Sakuraba, H. (2004) Highly stable l-lysine 6-dehydrogenase from the thermophile Geobacillus stearothermophilus isolated from a Japanese hot spring: characterization, gene cloning and sequencing, and expression. Appl Environ Microbiol 70: 937-942.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 937-942
-
-
Heydari, M.1
Ohshima, T.2
Nunoura-Kominato, N.3
Sakuraba, H.4
-
32
-
-
31144476400
-
l-Tryptophan 2,3-dioxygenase (tryptophan pyrrolase) (Pseudomonas fluorescens)
-
Ishimura, Y. (1970) l-Tryptophan 2, 3-dioxygenase (tryptophan pyrrolase) (Pseudomonas fluorescens). Methods Enzymol 17A: 429-434.
-
(1970)
Methods Enzymol
, vol.17 A
, pp. 429-434
-
-
Ishimura, Y.1
-
33
-
-
40849111045
-
Histidine catabolism and catabolite regulation
-
Ramos, J.L., and Filloux, A. (eds). Berlin, Germany: Springer
-
Itoh, Y., Nishijyo, T., and Nakada, Y. (2007) Histidine catabolism and catabolite regulation. In Pseudomonas, A Model System in Biology. Vol. 5. Ramos, J.L., and Filloux, A. (eds). Berlin, Germany: Springer, pp. 371-395.
-
(2007)
Pseudomonas, A Model System in Biology
, vol.5
, pp. 371-395
-
-
Itoh, Y.1
Nishijyo, T.2
Nakada, Y.3
-
34
-
-
77955591777
-
Hidden Markov model speed heuristic and iterative HMM search procedure
-
Johnson, L.S., Eddy, S.R., and Portugaly, E. (2010) Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics 11: 431.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 431
-
-
Johnson, L.S.1
Eddy, S.R.2
Portugaly, E.3
-
35
-
-
0019885901
-
Mechanistic studies on reactions of bacterial methionine y-lyase with olefinic amino acids
-
Johnston, M., Raines, R., Chang, M., Esaki, N., Soda, K., and Walsh, C. (1981) Mechanistic studies on reactions of bacterial methionine y-lyase with olefinic amino acids. Biochemistry 20: 4325-4333.
-
(1981)
Biochemistry
, vol.20
, pp. 4325-4333
-
-
Johnston, M.1
Raines, R.2
Chang, M.3
Esaki, N.4
Soda, K.5
Walsh, C.6
-
36
-
-
0033858162
-
Branched-chain amino-acid aminotransferase of Escherichia coli
-
Kagamiyama, H., and Hayashi, H. (2000) Branched-chain amino-acid aminotransferase of Escherichia coli. Methods Enzymol 324: 103-113.
-
(2000)
Methods Enzymol
, vol.324
, pp. 103-113
-
-
Kagamiyama, H.1
Hayashi, H.2
-
37
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res 40: D109-D114.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
38
-
-
48649091869
-
Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemia
-
Kikuchi, G., Motokawa, Y., Yoshida, T., and Hiraga, K. (2008) Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemia. Proc Jp Acad, Ser B 84: 246-263.
-
(2008)
Proc Jp Acad, Ser B
, vol.84
, pp. 246-263
-
-
Kikuchi, G.1
Motokawa, Y.2
Yoshida, T.3
Hiraga, K.4
-
39
-
-
0030050611
-
Molecular and phylogenetic characterization of pyruvate and 2-ketoisovalerate ferredoxin oxidoreductases from Pyrococcus furiosus and pyruvate ferredoxin oxidoreductase from Thermotoga maritima
-
Kletzin, A., and Adams, M.W.W. (1996) Molecular and phylogenetic characterization of pyruvate and 2-ketoisovalerate ferredoxin oxidoreductases from Pyrococcus furiosus and pyruvate ferredoxin oxidoreductase from Thermotoga maritima. J Bacteriol 178: 248-257.
-
(1996)
J Bacteriol
, vol.178
, pp. 248-257
-
-
Kletzin, A.1
Adams, M.W.W.2
-
40
-
-
14544281667
-
Substrate-dependent regulation of anaerobic degradation pathways for toluene and ethylbenzene in a denitrifying bacterium, strain EbN1
-
Kühner, S., Wöhlbrand, L., Fritz, I., Wruck, W., Hultschig, C., Hufnagel, P., etal. (2005) Substrate-dependent regulation of anaerobic degradation pathways for toluene and ethylbenzene in a denitrifying bacterium, strain EbN1. J Bacteriol 187: 1493-1503.
-
(2005)
J Bacteriol
, vol.187
, pp. 1493-1503
-
-
Kühner, S.1
Wöhlbrand, L.2
Fritz, I.3
Wruck, W.4
Hultschig, C.5
Hufnagel, P.6
-
41
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
Lagesen, K., Hallin, P., Rødland, E.A., Staerfeldt, H.-H., Rognes, T., and Ussery, D.W. (2007) RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 9: 3100-3108.
-
(2007)
Nucleic Acids Res
, vol.9
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rødland, E.A.3
Staerfeldt, H.-H.4
Rognes, T.5
Ussery, D.W.6
-
42
-
-
0141519279
-
OrthoMCL: identification of ortholog groups of eukaryotic genomes
-
Li, L., Stoeckert, C.J., Jr, and Roos, D.S. (2003) OrthoMCL: identification of ortholog groups of eukaryotic genomes. Genome Res 13: 2178-2189.
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert Jr, C.J.2
Roos, D.S.3
-
43
-
-
83655169524
-
Genome content of uncultivated marine Roseobacters in the surface ocean
-
Luo, H., Löytynoja, A., and Moran, M.A. (2012) Genome content of uncultivated marine Roseobacters in the surface ocean. Environ Microbiol 14: 41-51.
-
(2012)
Environ Microbiol
, vol.14
, pp. 41-51
-
-
Luo, H.1
Löytynoja, A.2
Moran, M.A.3
-
44
-
-
0014057187
-
The role of biotin-dependent carboxylations in biosynthetic reactions
-
Lynen, F. (1967) The role of biotin-dependent carboxylations in biosynthetic reactions. Biochem J 102: 381-400.
-
(1967)
Biochem J
, vol.102
, pp. 381-400
-
-
Lynen, F.1
-
45
-
-
0344949944
-
l-Threonine dehydrogenase (Arthrobacter)
-
McGilvray, D., and Morris, J.G. (1971) l-Threonine dehydrogenase (Arthrobacter). Methods Enzymol 17B: 580-584.
-
(1971)
Methods Enzymol
, vol.17 B
, pp. 580-584
-
-
McGilvray, D.1
Morris, J.G.2
-
46
-
-
0041467523
-
Histidase (histidine ammonia-lyase) (Bacillus subtilis)
-
Magasanik, B., Kaminskas, E., and Kimhi, Y. (1971) Histidase (histidine ammonia-lyase) (Bacillus subtilis). Methods Enzymol 17B: 47-50.
-
(1971)
Methods Enzymol
, vol.17 B
, pp. 47-50
-
-
Magasanik, B.1
Kaminskas, E.2
Kimhi, Y.3
-
47
-
-
69949116874
-
IMG ER: a system for microbial genome annotation expert review and curation
-
Markowitz, V.M., Ivanova, N.N., Chen, I.M.A., Chu, K., and Kyrpides, N.C. (2009) IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25: 2271-2278.
-
(2009)
Bioinformatics
, vol.25
, pp. 2271-2278
-
-
Markowitz, V.M.1
Ivanova, N.N.2
Chen, I.M.A.3
Chu, K.4
Kyrpides, N.C.5
-
48
-
-
0017163169
-
Branched-chain amino acid catabolism in bacteria
-
Massay, L.K., Sokatch, J.R., and Conrad, R.S. (1976) Branched-chain amino acid catabolism in bacteria. Bacteriol Rev 40: 42-54.
-
(1976)
Bacteriol Rev
, vol.40
, pp. 42-54
-
-
Massay, L.K.1
Sokatch, J.R.2
Conrad, R.S.3
-
49
-
-
84858698666
-
Lysine degradation through the saccharopine pathway in bacteria: LKR and SDH in bacteria and its relationship to the plant and animal enzymes
-
Mello Serrano, G.C., Silva Figueira, T.R., Kiyota, E., Zanata, N., and Arruda, P. (2012) Lysine degradation through the saccharopine pathway in bacteria: LKR and SDH in bacteria and its relationship to the plant and animal enzymes. FEBS Lett 586: 905-911.
-
(2012)
FEBS Lett
, vol.586
, pp. 905-911
-
-
Mello Serrano, G.C.1
Silva Figueira, T.R.2
Kiyota, E.3
Zanata, N.4
Arruda, P.5
-
50
-
-
19944408938
-
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
-
Moran, M.A., Buchan, A., Gonzalez, J.M., Heidelberg, J.F., Whitman, W.B., Kiene, R.P., etal. (2004) Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432: 910-913.
-
(2004)
Nature
, vol.432
, pp. 910-913
-
-
Moran, M.A.1
Buchan, A.2
Gonzalez, J.M.3
Heidelberg, J.F.4
Whitman, W.B.5
Kiene, R.P.6
-
51
-
-
0000859817
-
Rate of release of extracellular amino acids and carbohydrates from the marine diatom Chaetoceros affinis
-
Myklestad, S., Holm-Hansen, O., Vårum, K.M., and Volcani, B.E. (1989) Rate of release of extracellular amino acids and carbohydrates from the marine diatom Chaetoceros affinis. J Plankton Res 11: 763-773.
-
(1989)
J Plankton Res
, vol.11
, pp. 763-773
-
-
Myklestad, S.1
Holm-Hansen, O.2
Vårum, K.M.3
Volcani, B.E.4
-
52
-
-
84876532610
-
Database resources of the National Center for Biotechnology Information
-
NCBI Resource Coordinators
-
NCBI Resource Coordinators (2013) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 41: D8-D20.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
-
53
-
-
77952674525
-
Genome characteristics of a generalist marine bacterial lineage
-
Newton, R.J., Griffin, L.E., Bowles, K.M., Meile, C., Gifford, S., Givens, C.E., etal. (2010) Genome characteristics of a generalist marine bacterial lineage. ISME J 4: 784-798.
-
(2010)
ISME J
, vol.4
, pp. 784-798
-
-
Newton, R.J.1
Griffin, L.E.2
Bowles, K.M.3
Meile, C.4
Gifford, S.5
Givens, C.E.6
-
54
-
-
0025344277
-
Isolation of procaryotic RNA and detection of specific mRNA with biotinylated probes
-
Oelmüller, U., Krüger, N., Steinbüchel, A., and Friedrich, G.C. (1990) Isolation of procaryotic RNA and detection of specific mRNA with biotinylated probes. J Microbiol Methods 11: 73-81.
-
(1990)
J Microbiol Methods
, vol.11
, pp. 73-81
-
-
Oelmüller, U.1
Krüger, N.2
Steinbüchel, A.3
Friedrich, G.C.4
-
55
-
-
84859165788
-
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
-
Pagani, I., Liolios, K., Jansson, J., Chen, I.M., Smirnova, T., Nosrat, B., etal. (2012) The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 40: D571-D579.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Pagani, I.1
Liolios, K.2
Jansson, J.3
Chen, I.M.4
Smirnova, T.5
Nosrat, B.6
-
56
-
-
77950820827
-
How many bootstrap replicates are necessary?
-
Pattengale, N.D., Alipour, M., Bininda-Emonds, O.R.P., Moret, B.M.E., and Stamatakis, A. (2010) How many bootstrap replicates are necessary? J Comp Biol 17: 337-354.
-
(2010)
J Comp Biol
, vol.17
, pp. 337-354
-
-
Pattengale, N.D.1
Alipour, M.2
Bininda-Emonds, O.R.P.3
Moret, B.M.E.4
Stamatakis, A.5
-
57
-
-
0037391699
-
Global metabolic regulation analysis for Escherichia coli K12 based on protein expression by 2-dimensional electrophoresis and enzyme activity measurement
-
Peng, L., and Shimizu, K. (2003) Global metabolic regulation analysis for Escherichia coli K12 based on protein expression by 2-dimensional electrophoresis and enzyme activity measurement. Appl Microbiol Biotechnol 61: 163-178.
-
(2003)
Appl Microbiol Biotechnol
, vol.61
, pp. 163-178
-
-
Peng, L.1
Shimizu, K.2
-
58
-
-
0242421528
-
Basis for AMP activation of 'biodegradative' threonine dehydrase from Escherichia coli
-
Philips, A.T., and Wood, W.A. (1964) Basis for AMP activation of 'biodegradative' threonine dehydrase from Escherichia coli. Biochem Biophys Res Commun 15: 530-535.
-
(1964)
Biochem Biophys Res Commun
, vol.15
, pp. 530-535
-
-
Philips, A.T.1
Wood, W.A.2
-
59
-
-
0015290337
-
Determination of nanomolar quantities of free amino acids dissolved in North Atlantic ocean waters
-
Pocklington, R. (1972) Determination of nanomolar quantities of free amino acids dissolved in North Atlantic ocean waters. Anal Biochem 45: 403-421.
-
(1972)
Anal Biochem
, vol.45
, pp. 403-421
-
-
Pocklington, R.1
-
60
-
-
80053174834
-
EnzymeDetector: an integrated enzyme function prediction tool and database
-
Quester, S., and Schomburg, D. (2011) EnzymeDetector: an integrated enzyme function prediction tool and database. BMC Bioinformatics 12: 376.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 376
-
-
Quester, S.1
Schomburg, D.2
-
61
-
-
27144458111
-
Multiple and interconnected pathways for l-lysine catabolism in Pseudomonas putida KT2440
-
Revelles, O., Espinosa-Urgel, M., Fuhrer, T., Sauer, U., and Ramos, J.L. (2005) Multiple and interconnected pathways for l-lysine catabolism in Pseudomonas putida KT2440. J Bacteriol 187: 7500-7510.
-
(2005)
J Bacteriol
, vol.187
, pp. 7500-7510
-
-
Revelles, O.1
Espinosa-Urgel, M.2
Fuhrer, T.3
Sauer, U.4
Ramos, J.L.5
-
62
-
-
0026543129
-
Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev
-
Rüger, H.J., and Höfle, M.G. (1992) Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev. Int J Syst Bacteriol 42: 133-143.
-
(1992)
Int J Syst Bacteriol
, vol.42
, pp. 133-143
-
-
Rüger, H.J.1
Höfle, M.G.2
-
63
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
Rutherford, K., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M.A., etal. (2000) Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
-
64
-
-
84985240051
-
Lysine degradation in Pichia guilliermondii: characterization of a novel enzyme, l-lysine:pyruvate aminotransferase
-
Schmidt, H., Bode, R., and Birnbaum, D. (1987) Lysine degradation in Pichia guilliermondii: characterization of a novel enzyme, l-lysine:pyruvate aminotransferase. J Basic Microbiol 27: 595-601.
-
(1987)
J Basic Microbiol
, vol.27
, pp. 595-601
-
-
Schmidt, H.1
Bode, R.2
Birnbaum, D.3
-
65
-
-
84876522835
-
BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA
-
Schomburg, I., Chang, A., Placzek, S., Söhngen, C., Rother, M., Lang, M., etal. (2013) BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. Nucleic Acids Res 41: D764-D772.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Schomburg, I.1
Chang, A.2
Placzek, S.3
Söhngen, C.4
Rother, M.5
Lang, M.6
-
66
-
-
0034864322
-
Two similar gene clusters coding for enzymes of a new type of aerobic 2-aminobenzoate (anthranilate) metabolism in the bacterium Azoarcus evansii
-
Schühle, K., Jahn, M., Ghisla, S., and Fuchs, G. (2001) Two similar gene clusters coding for enzymes of a new type of aerobic 2-aminobenzoate (anthranilate) metabolism in the bacterium Azoarcus evansii. J Bacteriol 183: 5268-5278.
-
(2001)
J Bacteriol
, vol.183
, pp. 5268-5278
-
-
Schühle, K.1
Jahn, M.2
Ghisla, S.3
Fuchs, G.4
-
67
-
-
80054078476
-
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
-
Sievers, F., Wilm, A., Dineen, D.G., Gibson, T.J., Karplus, K., Li, W., etal. (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7: 539.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 539
-
-
Sievers, F.1
Wilm, A.2
Dineen, D.G.3
Gibson, T.J.4
Karplus, K.5
Li, W.6
-
68
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
69
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML web servers
-
Stamatakis, A., Hoover, P., and Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Syst Biol 57: 758-771.
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
70
-
-
84860488672
-
Substrate-controlled succession of marine bacterioplankton populations induced by phytoplankton bloom
-
Teeling, H., Fuchs, B.M., Becher, D., Klockow, C., Gardebrecht, A., Bennke, C.M., etal. (2012) Substrate-controlled succession of marine bacterioplankton populations induced by phytoplankton bloom. Science 336: 608-611.
-
(2012)
Science
, vol.336
, pp. 608-611
-
-
Teeling, H.1
Fuchs, B.M.2
Becher, D.3
Klockow, C.4
Gardebrecht, A.5
Bennke, C.M.6
-
71
-
-
77956292377
-
Bacterial phenylalanine and phenylacetate catabolic pathway revealed
-
Teufel, R., Mascaraque, V., Ismail, W., Voss, M., Perera, J., Eisenreich, W., etal. (2010) Bacterial phenylalanine and phenylacetate catabolic pathway revealed. Proc Natl Acad Sci USA 107: 14390-14395.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14390-14395
-
-
Teufel, R.1
Mascaraque, V.2
Ismail, W.3
Voss, M.4
Perera, J.5
Eisenreich, W.6
-
72
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
The Uniprot Consortium
-
The Uniprot Consortium (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res 40: D71-D75.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
-
73
-
-
84871308793
-
Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life
-
Thole, S., Kalhöfer, D., Voget, S., Berger, M., Engelhardt, T., Liesegang, H., etal. (2012) Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life. ISME J 6: 2229-2244.
-
(2012)
ISME J
, vol.6
, pp. 2229-2244
-
-
Thole, S.1
Kalhöfer, D.2
Voget, S.3
Berger, M.4
Engelhardt, T.5
Liesegang, H.6
-
74
-
-
84861211352
-
Physiological and proteomic adaptation of 'Aromatoleum aromaticum' EbN1 to low growth rates in benzoate-limited, anoxic chemostats
-
Trautwein, K., Lahme, S., Wöhlbrand, L., Feenders, C., Mangelsdorf, K., Harder, J., etal. (2012) Physiological and proteomic adaptation of 'Aromatoleum aromaticum' EbN1 to low growth rates in benzoate-limited, anoxic chemostats. J Bacteriol 194: 2165-2180.
-
(2012)
J Bacteriol
, vol.194
, pp. 2165-2180
-
-
Trautwein, K.1
Lahme, S.2
Wöhlbrand, L.3
Feenders, C.4
Mangelsdorf, K.5
Harder, J.6
-
75
-
-
0031729883
-
Reclassification of marine Agrobacterium species: proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev
-
Uchino, Y., Hirata, A., Yokota, A., and Sugiyama, J. (1998) Reclassification of marine Agrobacterium species: proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. J Gen Appl Microbiol 44: 201-210.
-
(1998)
J Gen Appl Microbiol
, vol.44
, pp. 201-210
-
-
Uchino, Y.1
Hirata, A.2
Yokota, A.3
Sugiyama, J.4
-
76
-
-
33750371632
-
Environmental biology of the marine Roseobacter lineage
-
Wagner-Döbler, I., and Biebl, H. (2006) Environmental biology of the marine Roseobacter lineage. Annu Rev Microbiol 60: 255-280.
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 255-280
-
-
Wagner-Döbler, I.1
Biebl, H.2
-
77
-
-
34447563587
-
Functional proteomic view of metabolic regulation in 'Aromatoleum aromaticum' strain EbN1
-
Wöhlbrand, L., Kallerhoff, B., Lange, D., Hufnagel, P., Thiermann, J., Reinhardt, R., etal. (2007) Functional proteomic view of metabolic regulation in 'Aromatoleum aromaticum' strain EbN1. Proteomics 7: 2222-2239.
-
(2007)
Proteomics
, vol.7
, pp. 2222-2239
-
-
Wöhlbrand, L.1
Kallerhoff, B.2
Lange, D.3
Hufnagel, P.4
Thiermann, J.5
Reinhardt, R.6
-
78
-
-
84876502985
-
Complete genome, catabolic sub-proteomes and key-metabolites of Desulfobacula toluolica Tol2, a marine, aromatic compound-degrading, sulfate-reducing bacterium
-
Wöhlbrand, L., Jacob, J.H., Kube, M., Mussmann, M., Jarling, R., Beck, A., etal. (2012) Complete genome, catabolic sub-proteomes and key-metabolites of Desulfobacula toluolica Tol2, a marine, aromatic compound-degrading, sulfate-reducing bacterium. Environ Microbiol 15: 1334-1355.
-
(2012)
Environ Microbiol
, vol.15
, pp. 1334-1355
-
-
Wöhlbrand, L.1
Jacob, J.H.2
Kube, M.3
Mussmann, M.4
Jarling, R.5
Beck, A.6
-
79
-
-
0024578239
-
The 2-oxo acid dehydrogenase complexes: recent advances
-
Yeaman, S.J. (1989) The 2-oxo acid dehydrogenase complexes: recent advances. Biochem J 257: 625-632.
-
(1989)
Biochem J
, vol.257
, pp. 625-632
-
-
Yeaman, S.J.1
-
80
-
-
84867619920
-
Development of a satisfactory and general continuous assay for aminotransferases by coupling with (R)-2-hydroxyglutarate dehydrogenase
-
Yu, X., Bresser, J., Schall, I., Djurdjevic, I., Buckel, W., Wang, X., etal. (2012) Development of a satisfactory and general continuous assay for aminotransferases by coupling with (R)-2-hydroxyglutarate dehydrogenase. Anal Biochem 431: 127-131.
-
(2012)
Anal Biochem
, vol.431
, pp. 127-131
-
-
Yu, X.1
Bresser, J.2
Schall, I.3
Djurdjevic, I.4
Buckel, W.5
Wang, X.6
-
81
-
-
68049109520
-
Growth phase-dependent global protein and metabolite profiles of Phaeobacter gallaeciensis strain DSM 17395, a member of the marine Roseobacter-clade
-
Zech, H., Thole, S., Schreiber, K., Kalhöfer, D., Voget, S., Brinkhoff, T., etal. (2009) Growth phase-dependent global protein and metabolite profiles of Phaeobacter gallaeciensis strain DSM 17395, a member of the marine Roseobacter-clade. Proteomics 9: 3677-3697.
-
(2009)
Proteomics
, vol.9
, pp. 3677-3697
-
-
Zech, H.1
Thole, S.2
Schreiber, K.3
Kalhöfer, D.4
Voget, S.5
Brinkhoff, T.6
-
82
-
-
79960807912
-
Biological versus technical variability in 2D DIGE experiments with environmental bacteria
-
Zech, H., Echtermeyer, C., Wöhlbrand, L., Blasius, B., and Rabus, R. (2011) Biological versus technical variability in 2D DIGE experiments with environmental bacteria. Proteomics 11: 3380-3389.
-
(2011)
Proteomics
, vol.11
, pp. 3380-3389
-
-
Zech, H.1
Echtermeyer, C.2
Wöhlbrand, L.3
Blasius, B.4
Rabus, R.5
-
83
-
-
84885083583
-
Adaptation of Phaeobacter inhibens DSM 17395 to growth with complex nutrients
-
Zech, H., Hensler, M., Koßmehl, S., Drüppel, K., Wöhlbrand, L., Trautwein, K., etal. (2013a) Adaptation of Phaeobacter inhibens DSM 17395 to growth with complex nutrients. Proteomics 13: 2851-2868.
-
(2013)
Proteomics
, vol.13
, pp. 2851-2868
-
-
Zech, H.1
Hensler, M.2
Koßmehl, S.3
Drüppel, K.4
Wöhlbrand, L.5
Trautwein, K.6
-
84
-
-
84885060878
-
Dynamics of amino acid utilization in Phaeobacter inhibens DSM 17395
-
Zech, H., Hensler, M., Koßmehl, S., Drüppel, K., Wöhlbrand, L., Trautwein, K., etal. (2013b) Dynamics of amino acid utilization in Phaeobacter inhibens DSM 17395. Proteomics 13: 2869-2885.
-
(2013)
Proteomics
, vol.13
, pp. 2869-2885
-
-
Zech, H.1
Hensler, M.2
Koßmehl, S.3
Drüppel, K.4
Wöhlbrand, L.5
Trautwein, K.6
-
85
-
-
0017283326
-
Molar absorptivities of β-NADH and β-NADPH
-
Ziegenhorn, J., Senn, M., and Bücher, T. (1976) Molar absorptivities of β-NADH and β-NADPH. Clin Chem 22: 151-160.
-
(1976)
Clin Chem
, vol.22
, pp. 151-160
-
-
Ziegenhorn, J.1
Senn, M.2
Bücher, T.3
-
86
-
-
77957014791
-
l-Leucine dehydrogenase (Bacillus cereus)
-
Zink, M.W., and Sanwal, B.D. (1970) l-Leucine dehydrogenase (Bacillus cereus). Methods Enzymol 17A: 799-802.
-
(1970)
Methods Enzymol
, vol.17 A
, pp. 799-802
-
-
Zink, M.W.1
Sanwal, B.D.2
|